BAC Information

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BAC

Clone NameB6Ng01-013M20
ChromosomeX (Build37)
Map Location 130,076,487 - 130,215,269
singlet/doubletdoublet
Overlap geneLOC100040794, Pcdh19
Upstream geneLOC665846, LOC665850, LOC665854
Downstream geneLOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013M20.bB6Ng01-013M20.g
ACCDH848527DH848528
length6781,094
definitionDH848527|Mus musculus domesticus DNA, BAC clone: B6Ng01-013M20, 5' end.DH848528|Mus musculus domesticus DNA, BAC clone: B6Ng01-013M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,214,595 - 130,215,269)(130,076,487 - 130,077,587)
sequence
gaattcctttttcatttcattttcctcctgtggttcggaatcctaaaggc
actccaagtttggctcttttgttctctaccatctatcctgctgagactat
ggtcagtaggatacaagcaataaagttttaaaagtcacattgctggtttt
tagccattctggtaatgtttgacagttgagggggttgaaactgttactaa
catgaatattgtatgaagcagccatgcatttgaattaactgtttcccttc
agtttgggtgttttcctggaggtttttttttttttttccaaacacaatat
ggccaaatgtttgttggttattgaaataatctgggagactagggtgatgt
gccagtgatggtgatgaggttgggggaagaggaagctataaacaagtcct
taagttggtttcattttctatgaagtgcttaagtccctctttggttggaa
atttgttaatactgggagacatgctctctttctagtcactctgaaagcta
ttattcctgtagatttcaagtggacttcaacagtttttcagggtatttgt
ataggtatcatctcattagaaactggcaattgtttatcttgatagagtcc
tccctggtgagagataaaaacaaagatttagagatgctgaggaacttgct
tcagacaccaaaaagcagatcacaccga
gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaaa
caaaaaacaaaaaaaaagaaaggaaggaagaaagaaagaaaggaaggaag
gaaggaaggaaggaaggaaggaaggaaggaaggagagagagagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaggaaggaa
ggaaggagagagagagagaaagaaagaaagaaaaagaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaggaaggaaggaaggaaggaaggaaggaaggaaagaagaaagagaga
aagaaaatgtgggaactgataaagggatgatgaaaaagaaaaggtaagga
atataaaaaccaaaagggttaaggaatgatatatcaatcaaaaagaattt
gaaaaaattaagaatatttggaccaaaaactctaatgacctcaccaggaa
tgaatatggtgaattctgtaacagcctcaccaataactgggaagaccact
tggatgtcaaagtacttcctttgaagattggttgaaattcagaacattga
tcttaatgccccagccagctccctttaacctctttaagtacaagaaaagc
aacattgaactctatgtccatcttgtgctcaccatggatacccacaatga
catgataactgagtacctcaactatatctgtggtttgattcactagaaga
cctactcctgaaaatcctgagaaaaatcgagatcttgaagtatccacaaa
acattttaaagaaataccttgagctgtctcctcagctcacgggaaaaaca
agagaacttcaaggaattcctactattgtatttcctctaggaattctaag
cttgaaatccttgaagatgccacttactgtgatggcctctctaagctgtg
caccattgcactccaactggagattgagatggacactatcattacataac
tagtcggagcaagcaggtgacacttcttgtggaacatggcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_130214595_130215269
seq2: B6Ng01-013M20.b_50_727 (reverse)

seq1  TCGGTGTGATCTGCTTTCTGG-GTCTG-AGCAAGTTCCTCAGCATCTCTA  48
      ||||||||||||||||| ||| ||||| ||||||||||||||||||||||
seq2  TCGGTGTGATCTGCTTTTTGGTGTCTGAAGCAAGTTCCTCAGCATCTCTA  50

seq1  AATCTTTG-TTTTATCTCTCACCAGGGAGGACTCTATCAAGATAAACAAT  97
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGTTTTTATCTCTCACCAGGGAGGACTCTATCAAGATAAACAAT  100

seq1  TGCCAGTTTCTAATGAGATGATACCTATACAAATACCCTGAAAAACTGTT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTTTCTAATGAGATGATACCTATACAAATACCCTGAAAAACTGTT  150

seq1  GAAGTCCACTTGAAATCTACAGGAATAATAGCTTTCAGAGTGACTAGAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCACTTGAAATCTACAGGAATAATAGCTTTCAGAGTGACTAGAAA  200

seq1  GAGAGCATGTCTCCCAGTATTAACAAATTTCCAACCAAAGAGGGACTTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATGTCTCCCAGTATTAACAAATTTCCAACCAAAGAGGGACTTAA  250

seq1  GCACTTCATAGAAAATGAAACCAACTTAAGGACTTGTTTATAGCTTCCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCATAGAAAATGAAACCAACTTAAGGACTTGTTTATAGCTTCCTC  300

seq1  TTCCCCCAACCTCATCACCATCACTGGCACATCACCCTAGTCTCCCAGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCAACCTCATCACCATCACTGGCACATCACCCTAGTCTCCCAGAT  350

seq1  TATTTCAATAACCAACAAACATTTGGCCATATTGTGTTTGGAAAAAAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAATAACCAACAAACATTTGGCCATATTGTGTTTGGAAAAAAAAA  400

seq1  AAAAAACCTCCAGGAAAACACCCAAACTGAAGGGAAACAGTTAATTCAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCTCCAGGAAAACACCCAAACTGAAGGGAAACAGTTAATTCAAA  450

seq1  TGCATGGCTGCTTCATACAATATTCATGTTAGTAACAGTTTCAACCCCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGCTGCTTCATACAATATTCATGTTAGTAACAGTTTCAACCCCCT  500

seq1  CAACTGTCAAACATTACCAGAATGGCTAAAAACCAGCAATGTGACTTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCAAACATTACCAGAATGGCTAAAAACCAGCAATGTGACTTTTA  550

seq1  AAACTTTATTGCTTGTATCCTACTGACCATAGTCTCAGCAGGATAGATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATTGCTTGTATCCTACTGACCATAGTCTCAGCAGGATAGATGG  600

seq1  TAGAGAACAAAAGAGCCAAACTTGGAGTGCCTTTAGGATTCCGAACCACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAACAAAAGAGCCAAACTTGGAGTGCCTTTAGGATTCCGAACCACA  650

seq1  GGAGGAAAATGAAATGAAAAAGGAATTC  675
      ||||||||||||||||||||||||||||
seq2  GGAGGAAAATGAAATGAAAAAGGAATTC  678

seq1: chrX_130076487_130077587
seq2: B6Ng01-013M20.g_69_1162

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAA  50

seq1  CAAAAAACAAAAAAAAAGAAAGGAAGGAAGAAAGAAAGAAAGGAAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACAAAAAAAAAGAAAGGAAGGAAGAAAGAAAGAAAGGAAGGAAG  100

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGAGAGAGAGAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGAGAGAGAGAAAGAAA  150

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGGAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGGAAGGAA  200

seq1  GGAAGGAGAGAGAGAGAGAAAGAAAGAAAGAAAAAGAAGAAAGAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGAGAGAGAGAGAAAGAAAGAAAGAAAAAGAAGAAAGAAAGAAA  250

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAA  300

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  350

seq1  AAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGAAAGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGAAAGAGAGA  400

seq1  AAGAAAATGTGGGAACTGATAAAGGGATGATGAAAAAGAAAAGGTAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGTGGGAACTGATAAAGGGATGATGAAAAAGAAAAGGTAAGGA  450

seq1  ATATAAAAACCAAAAGGGTTAAGGAATGATATATCAATCAAAAAGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAACCAAAAGGGTTAAGGAATGATATATCAATCAAAAAGAATTT  500

seq1  GAAAAAATTAAGAATATTTGGACCAAAAACTCTAATGACCTCACCAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATTAAGAATATTTGGACCAAAAACTCTAATGACCTCACCAGGAA  550

seq1  TGAATATGGTGAATTCTGTAACAGCCTCACCAATAACTGGGAAGACCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGGTGAATTCTGTAACAGCCTCACCAATAACTGGGAAGACCACT  600

seq1  TGGATGTC-AAGTACTTCCTTTGAAGATTGGTTGAAATTCAGAACATTGA  649
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCAAAGTACTTCCTTTGAAGATTGGTTGAAATTCAGAACATTGA  650

seq1  TCTTAATGCCCCAGCCAGCTCCCTTTAACCTCTTTAAGTACAAGAAAAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGCCCCAGCCAGCTCCCTTTAACCTCTTTAAGTACAAGAAAAGC  700

seq1  AACATTGAACTCTATGTCCATCTTGTGCTCACCATGGATACCCACAATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGAACTCTATGTCCATCTTGTGCTCACCATGGATACCCACAATGA  750

seq1  CATGATAACTGAGTACCTCAACTATATCTGTGGTTTGATTCACTAGAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAACTGAGTACCTCAACTATATCTGTGGTTTGATTCACTAGAAGA  800

seq1  CCTACTCCTGAGAATCCTGAG-AAAATCGAGATCTTGAAGTTATCCACAA  848
      ||||||||||| ||||||||| |||||||||||||||||| ||||||| |
seq2  CCTACTCCTGAAAATCCTGAGAAAAATCGAGATCTTGAAG-TATCCAC-A  848

seq1  AAACATTTTAAAGAAATACCTTGAGCTTGTCT-CTCAGCTCAC-GGAAAA  896
      |||||||||||||||||||||||||| ||||| |||||||||| ||||||
seq2  AAACATTTTAAAGAAATACCTTGAGC-TGTCTCCTCAGCTCACGGGAAAA  897

seq1  CAAAGAGAACTACAAGGAATT-CTAC-AATGTATT--CTCTAAGAATCTA  942
        ||||||||| ||||||||| |||| | ||||||  ||||| ||||   
seq2  ACAAGAGAACTTCAAGGAATTCCTACTATTGTATTTCCTCTAGGAATTCT  947

seq1  AAGCTTGAAATCCTTGAAGATTCCACTAACCTGTGATGG-CTCTCTAAGC  991
      ||||||||||||||||||||| ||||| | ||||||||| ||||||||||
seq2  AAGCTTGAAATCCTTGAAGATGCCACTTA-CTGTGATGGCCTCTCTAAGC  996

seq1  TGTGGCACCATTGCACTTCTCAAACTGGAGA-TGAGATGAACACTATCTA  1040
      ||| |||||||||||   ||| ||||||||| ||||||| |||||||| |
seq2  TGT-GCACCATTGCA---CTCCAACTGGAGATTGAGATGGACACTATC-A  1041

seq1  TTACATAACTAGTCAGAGCAAAAAGCAGGTGACAAACTGCCTTTGTGGAG  1090
      |||||||||||||| ||||   |||||||||||  ||| |  ||||||| 
seq2  TTACATAACTAGTCGGAGC---AAGCAGGTGAC--ACTTC--TTGTGGAA  1084

seq1  CATGTGCAGAA  1101
      |||| ||||||
seq2  CATG-GCAGAA  1094