BAC Information

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BAC

Clone NameB6Ng01-014D24
ChromosomeX (Build37)
Map Location 141,065,475 - 141,066,615
singlet/doubletsinglet
Overlap geneTrpc5
Upstream genePak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, LOC100039436
Downstream geneZcchc16, LOC666655, LOC623591, Lhfpl1, Amot, EG434860, LOC100039313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014D24.bB6Ng01-014D24.g
ACCDH848847DH848848
length1,1891,116
definitionDH848847|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D24, 5' end.DH848848|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcaatcaaagtacatatttagctgagtgggtgtggttatcatg
ttctttgaaaactctgagaagaaacctaagctcgaaatacacagctaaca
tatttccatattcctcactttcataaactatatgatatactaaacacttg
tattttagcgtttatgtttcaatttaatgttgtacacagcaataaataat
acaattgtattctatgactttaatttgtcaatataacctcaagaacatat
ttctatctcataaatataatctcagtattattattttagtaattggtgat
aatttattgtaaaataagtatcacaattttcaaatcatttattattccac
gatgcggttgtttgcacactcttgttgttacaaataatattatagataca
aataatatatgtgccattagaggatgtattttcactgagttatttttctg
aataaattactggaagtggaattgctcctttgaaacctataatgttttaa
aacttgtatatatgtactcaaattgtcctcaccaaaggctatatgaattg
atgtcctataatcctttatgtgcccatttccacactcccaatatgaatat
taaactttgatattttctttaatatagttttaaaaatacgttttttaatt
tttaagtgcaactggacctttctgtataacattactagtcatttgcattt
ttttcttctttgtaaattacttgtttatgttgtttactacacatttccat
attaaacatcattttatagatccatagaactttatcatatgttaagtaga
tttaatctcatttctggcctatatgttataaatattttactgagtttttc
taatgtgtttcatcatgtaaatttttaaatttatgtagtcaaatatatgt
gatacactatgggtttccatttcatgtaataaactctcaaatccctttct
gtgagtttgtgcgttttttcttatgtgatctctatgttcatttacaccat
ctgatcatctgaaatgctcagaatgaatgatctaatctaaatcgatacta
ctctgggccatatctaagaatgcctaccatgcacaggctggttctatggc
ctgttttggatgccagcgaacaccttagtgaccccacgaaggtatagagt
ggtcagaacatgatacatccgacctttaagaatgagact
gaattctttctggtctcctttctccttggcctttctctttgtaattctac
cacctgctactgaaatctgttctcagcctccagcctcttgggagtttctc
atagtccttggcagaattttctgataaagatacggattgaggaactggaa
gtaatgttggtcctgaactgcccagatcttggagagcagacctcagaata
ctatgaaaaggtctaaaaggccccctgcctgagatggagaaattgcctga
tttacgagtcttctggtttccatagtctcatgtgagcctctttctttgag
cttcttcaccttgtacattctagactttctgtatttacctgctaagtttg
gatctattattgtatctaattccatttaaaaatatgttattgtatccagt
ttccagaacttcctatatttgtactatcttttgaatgtgttcctatattc
tggttgtatggtctgctttatctgcacttgtagtttcatattttgctgaa
gttcattgttcccttgcatgcttgttattcctaacatgactgaagcctca
aaggtatatgtgtgtcagggattggaaaatgagactttatcaatccaaat
aaatgaaaatttgttaaggtagttttaatccataatatcctatcctttct
cagtctctaaaatgtacttctttaggaatctgtctttataagattcatat
catttaaatcatcataaaataaaccctaccttcttagtgatgctgatatg
tgcttgagtagaaagagggtacaaatgacctcaaagtccaatcttccaga
gaaagaggtaagacttgtcctttactactgctgtgattaataattttata
tgtcaacttgacagggctattaggtagataccaagatagttggtcattat
atgaatgtgccatttgaggatgtgattacatttgattggtagactgagta
aagaagcactttatctttataatgtgggtgggactatctacccatcgatg
cctgaataagccgaggctgacttgcactagaggactatttccacctagga
ctcgtgtggaaatgcttggttcttggaagggtgcctcagactaaactaac
ttatccttgagcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_141065475_141066615
seq2: B6Ng01-014D24.g_63_1178

seq1  GAATTCTTTCTGGTCTCCTTTCTCCTTGGCCTTTCTCTTTGTAATTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGGTCTCCTTTCTCCTTGGCCTTTCTCTTTGTAATTCTAC  50

seq1  CACCTGCTACTGAAATCTGTTCTCAGCCTCCAGCCTCTTGGGAGTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTACTGAAATCTGTTCTCAGCCTCCAGCCTCTTGGGAGTTTCTC  100

seq1  ATAGTCCTTGGCAGAATTTTCTGATAAAGATACGGATTGAGGAACTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCTTGGCAGAATTTTCTGATAAAGATACGGATTGAGGAACTGGAA  150

seq1  GTAATGTTGGTCCTGAACTGCCCAGATCTTGGAGAGCAGACCTCAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTTGGTCCTGAACTGCCCAGATCTTGGAGAGCAGACCTCAGAATA  200

seq1  CTATGAAAAGGTCTAAAAGGCCCCCTGCCTGAGATGGAGAAATTGCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAAGGTCTAAAAGGCCCCCTGCCTGAGATGGAGAAATTGCCTGA  250

seq1  TTTACGAGTCTTCTGGTTTCCATAGTCTCATGTGAGCCTCTTTCTTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGAGTCTTCTGGTTTCCATAGTCTCATGTGAGCCTCTTTCTTTGAG  300

seq1  CTTCTTCACCTTGTACATTCTAGACTTTCTGTATTTACCTGCTAAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCACCTTGTACATTCTAGACTTTCTGTATTTACCTGCTAAGTTTG  350

seq1  GATCTATTATTGTATCTAATTCCATTTAAAAATATGTTATTGTATCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATTATTGTATCTAATTCCATTTAAAAATATGTTATTGTATCCAGT  400

seq1  TTCCAGAACTTCCTATATTTGTACTATCTTTTGAATGTGTTCCTATATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAACTTCCTATATTTGTACTATCTTTTGAATGTGTTCCTATATTC  450

seq1  TGGTTGTATGGTCTGCTTTATCTGCACTTGTAGTTTCATATTTTGCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTATGGTCTGCTTTATCTGCACTTGTAGTTTCATATTTTGCTGAA  500

seq1  GTTCATTGTTCCCTTGCATGCTTGTTATTCCTAACATGACTGAAGCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTGTTCCCTTGCATGCTTGTTATTCCTAACATGACTGAAGCCTCA  550

seq1  AAGGTATATGTGTGTCAGGGATTGGAAAATGAGACTTTATCAATCCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATATGTGTGTCAGGGATTGGAAAATGAGACTTTATCAATCCAAAT  600

seq1  AAATGAAAATTTGTTAAGGTAGTTTTAATCCATAATATCCTATCCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAATTTGTTAAGGTAGTTTTAATCCATAATATCCTATCCTTTCT  650

seq1  CAGTCTCTAAAATGTACTTCTTTAGGAATCTGTCTTTATAAGATTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTAAAATGTACTTCTTTAGGAATCTGTCTTTATAAGATTCATAT  700

seq1  CATTTAAATCATCATAAAAATAAACCCTACCTTCTTAGTGATGCTGATAT  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATTTAAATCATCAT-AAAATAAACCCTACCTTCTTAGTGATGCTGATAT  749

seq1  GTGCTTGAGTAGAAAGAGGGTACAAATGACCTCAAAAGTCCAATCTTCCC  800
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  GTGCTTGAGTAGAAAGAGGGTACAAATGACCTC-AAAGTCCAATCTT-CC  797

seq1  AGAGAAAGAGGTAAGACTTGT-CTTTACTACTGCTGTGATTAATAATTTT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGAAAGAGGTAAGACTTGTCCTTTACTACTGCTGTGATTAATAATTTT  847

seq1  ATATGTCAACTTGACAGGGCTATTAGGTAGAATACCAAGATAGTTGGTCA  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATATGTCAACTTGACAGGGCTATTAGGTAG-ATACCAAGATAGTTGGTCA  896

seq1  TTATTATGAATGTGCCCATTTGAGGATGTGATTAACATTTGAATGGGTAG  949
      ||| |||||||||| |||||||||||||||||| ||||||| || |||||
seq2  TTA-TATGAATGTG-CCATTTGAGGATGTGATT-ACATTTG-ATTGGTAG  942

seq1  ACTGAGTAAAAGAAGCACTTTATCTTTAATAATGTGGGTGGGACTAATCT  999
      ||||||| ||||||||||||||||||| ||||||||||||||||| ||||
seq2  ACTGAGT-AAAGAAGCACTTTATCTTT-ATAATGTGGGTGGGACT-ATCT  989

seq1  AACCCATCGAATGCCTGAATAAAGCAGAGGCTGAACCTGCACTAAGAGGA  1049
       |||||||| |||||||||| |||| ||||||| || |||||| ||||||
seq2  -ACCCATCG-ATGCCTGAAT-AAGCCGAGGCTG-ACTTGCACT-AGAGGA  1034

seq1  CTATTTCCAACTAAGGACTTCAGTTGTGGAATTGCTTTGTTCTTGGAGTG  1099
      ||||||||| || ||||||     ||||||| ||||| |||||||||  |
seq2  CTATTTCCACCT-AGGACT---CGTGTGGAAATGCTTGGTTCTTGGAAGG  1080

seq1  TTGCCTCAGACTAGAACTAAAACTTTAGCCCTTTGAGCATCT  1141
       |||||||||||| ||||||    ||| ||  ||||||||||
seq2  GTGCCTCAGACTA-AACTAA---CTTATCC--TTGAGCATCT  1116