BAC Information

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BAC

Clone NameB6Ng01-014J09
ChromosomeX (Build37)3 (Build37)
Map Location 123,374,400 - 123,374,916110,712,186 - 110,713,240
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665611, EG626048, LOC100040410, LOC100039903, LOC665679, 4932411N23Rik
Downstream geneGm381, LOC100040472, Gm382, 4921511C20Rik, 4930412D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014J09.bB6Ng01-014J09.g
ACCDH849085DH849086
length9361,019
definitionDH849085|Mus musculus domesticus DNA, BAC clone: B6Ng01-014J09, 5' end.DH849086|Mus musculus domesticus DNA, BAC clone: B6Ng01-014J09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,374,400 - 123,374,916)(110,712,186 - 110,713,240)
sequence
gaattctttttttttaatttttattttttaatatttttattacgtatttt
cctcatttacatttccaatgctatcccaaaagtgccccacaccctccccc
acacactcccctacacacccagttctactctttggccctggcattcccct
gtactggggcatataaagtttgtgtgtccaatgggcctctctttccagtg
gtggccgaccaggccatcttttgatacatatgcagctagaggcaagagct
ccagggtactggttagttcataatgttgctccagctatagggttgcagat
ccctttagctccttgggtacattctctagctcctccattggccctgtgat
ccatccaatagctgactatgagcatccacttctgtgtttgctaggcccca
gcatagtctcccaagagacagctatatcagggtcctttcagcaaaatttt
gctaaggtatgcaatagtgtgagcatttggaggctgattatgggatggat
ccctggatatggcagtctctagatggtccatccttttatctcagctccaa
actttgtctctgtaactccttccatgggtgttttgttcccaattctaaga
aggggcaaagtgtccacactttggtcttcattcttcttgagtttcatgtg
tttcgcaaattgtatcatatcttgggtattctaagtttctgggctagtat
ccaattatcagtgagtacatatcatttgatttcttttgttattgggttac
ctcactcaggatgatgccctccaggtctaaccatttgcctaggaatttca
taatttcattctttctaatagctgagtagtactccattgtgtaaatgtac
cacatttttttatatccattcctctgttggaggggcatctgggttctttc
cacttctggctattataaataagctgctatggacat
gaattcttttcgttcccttctattctcccaggcagcaaacatcacacctg
ctgtctgaaatgtgtactgaagggctgttaaatgtactcaaacatgaaga
aaagatttaaagcttatatttttaaagagtacttcttcaaataaaactct
aaagacatattcataaaatcaaagaatgacagctttcatcaaacacttgt
tatcgaaggaaagacattccactgtctttttttttttttttttttttgct
acctcaggagaaagctctacagctacctcagcagttgtagaccacctcct
ttgggcatctacaatacaaaagagatcacttttcactcatttggatcaaa
taacatgccaccctttatatttcctcctagaaaaaataaaaaataataga
tctcattttctagtttctagaacaacacatttcagtgactactgaagaga
agaataggaagtttttttgtattactctctttcctgtgacttttcaaaga
tgacaaccagtctaaaatcatgatttgtgactacctggttaacgtctatt
gtgctactcctgtgcaataaataagcttgatttgatttgcaaaaacaggt
ttcttaaaatcgtacaaagtcaagatattctggatggaagcaaagagata
caaggtgctgtctctagatttttctagaatggtgctattcttgatttgga
atttgtgaagtagactgaattattccagcctctgatttaataatcaaatt
acaattgtatggtatctgatttctaagaatcaaactagtgatactaagtt
ggaaaaaaaaaaaactatttcaaaccttttaatgatttctccaggagatg
gattggaaaaaaaaaaaaaaaacaaaacatgagtgcctcctatgtgacat
gactcatcatcacgtcaggtaatgcaacagacagtagcttttcacagtct
tttaaactctcaatgtggcatcaggtgtggaacgataaatctgtagaaat
aggctaagagtgggcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_123374400_123374916
seq2: B6Ng01-014J09.b_47_555

seq1  ATTCTTTTTTTTAATTTATTTTTATTTTTTTTAAATTTTTTATTAGGTAT  50
      |||||||||||   || |||||||  ||||||||  ||||||||| ||||
seq2  ATTCTTTTTTT---TTAATTTTTA--TTTTTTAATATTTTTATTACGTAT  45

seq1  TTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCTACC  100
      ||  ||||||||||||||||||||||| |||||||| ||||| |||  ||
seq2  TTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTGCCCCACACCCTCC  95

seq1  CACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCC  150
      | | | ||||||||||| |||||| | |  || |||||||||||| ||||
seq2  CCCACACACTCCCCTACACACCCAGTTCTACTCTTTGGCCCTGGCATTCC  145

seq1  CCTGTACTGGGGCATATAAATTTTGCGTGTCCAATGGGCCTCTCTTTCCA  200
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  CCTGTACTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCA  195

seq1  GTGATGGCCGACTAGGCCATCTTTTGATACATATGTAGCTAGAGTCAAGA  250
      ||| |||||||| |||||||||||||||||||||| |||||||| |||||
seq2  GTGGTGGCCGACCAGGCCATCTTTTGATACATATGCAGCTAGAGGCAAGA  245

seq1  GCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCA  300
      ||||| ||||||||||||||||||||||||| |||| |||||||||||||
seq2  GCTCCAGGGTACTGGTTAGTTCATAATGTTGCTCCAGCTATAGGGTTGCA  295

seq1  GATCCCTTTAGCTCCTTGGGTGCTTTCTCTAGCTCCTCCATTGGGAGCCC  350
      ||||||||||||||||||||| | |||||||||||||||||||   ||||
seq2  GATCCCTTTAGCTCCTTGGGTACATTCTCTAGCTCCTCCATTG---GCCC  342

seq1  TGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAG  400
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  TGTGATCCATCCAATAGCTGACTATGAGCATCCACTTCTGTGTTTGCTAG  392

seq1  GCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAA  450
      ||||| |||||||||| ||||||||||||| ||| ||||||||||   ||
seq2  GCCCCAGCATAGTCTCCCAAGAGACAGCTATATCAGGGTCCTTTCAGCAA  442

seq1  AATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGG  500
      ||| ||||||  ||||||||| |||| ||| |||||| ||||||||||||
seq2  AATTTTGCTAAGGTATGCAATAGTGTGAGCATTTGGAGGCTGATTATGGG  492

seq1  GTGGATCCCTGGATATG  517
       ||||||||||||||||
seq2  ATGGATCCCTGGATATG  509

seq1: chr3_110712186_110713240
seq2: B6Ng01-014J09.g_67_1085 (reverse)

seq1  AGCTGCCCACCTTCTTATAGCTTTATTTTCTTACAGGATTTTATTCTGTC  50
      ||||||||||  |||  ||||  |||||   |||||   |||||   || 
seq2  AGCTGCCCAC--TCT--TAGC-CTATTT--CTACAG--ATTTAT--CGTT  39

seq1  TCACACCTTGATTGCCACACTGAGAGTTTTAAAAAAGAACTGTGGAAAAA  100
       |||||| ||| ||||||| |||||||||   ||||| ||||||  ||||
seq2  CCACACC-TGA-TGCCACATTGAGAGTTT---AAAAG-ACTGTG--AAAA  81

seq1  GCTACTTGTCTGTTGGCATTACCCCTGGAACCGTGAATGATGAGGTTCAA  150
      ||||| |||||||| ||||||  ||||    |||| ||||||||  || |
seq2  GCTAC-TGTCTGTT-GCATTA--CCTG---ACGTG-ATGATGAG--TC-A  120

seq1  TGTCACATAGGAGGCACTCATGTTTTTTGTTTTTTTTTTTTTTTTTTCCA  200
      |||||||||||||||||||||||||    | |||||||||||||||||||
seq2  TGTCACATAGGAGGCACTCATGTTT----TGTTTTTTTTTTTTTTTTCCA  166

seq1  ATCCATCTCCTGGAGAAAATCATTAAAAGGTTTGGAAATAGTTTTTTTTT  250
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  ATCCATCTCCTGGAG-AAATCATTAAAAGGTTT-GAAATAGTTTTTTTTT  214

seq1  TTTCCAACTTAGTATCACTAGTTTGATTCTTAGAAATCAGATACCATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACTTAGTATCACTAGTTTGATTCTTAGAAATCAGATACCATACA  264

seq1  ATTGTAATTTGATTATTAAATCAGAGGCTGGAATAATTCAGTCTACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATTTGATTATTAAATCAGAGGCTGGAATAATTCAGTCTACTTCA  314

seq1  CAAATTCCAAATCAAGAATAGCACCATTCTAGAAAAATCTAGAGACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCAAATCAAGAATAGCACCATTCTAGAAAAATCTAGAGACAGCA  364

seq1  CCTTGTATCTCTTTGCTTCCATCCAGAATATCTTGACTTTGTACGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTATCTCTTTGCTTCCATCCAGAATATCTTGACTTTGTACGATTTT  414

seq1  AAGAAACCTGTTTTTGCAAATCAAATCAAGCTTATTTATTGCACAGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCTGTTTTTGCAAATCAAATCAAGCTTATTTATTGCACAGGAGT  464

seq1  AGCACAATAGACGTTAACCAGGTAGTCACAAATCATGATTTTAGACTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATAGACGTTAACCAGGTAGTCACAAATCATGATTTTAGACTGGT  514

seq1  TGTCATCTTTGAAAAGTCACAGGAAAGAGAGTAATACAAAAAAACTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTTTGAAAAGTCACAGGAAAGAGAGTAATACAAAAAAACTTCCT  564

seq1  ATTCTTCTCTTCAGTAGTCACTGAAATGTGTTGTTCTAGAAACTAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTCTTCAGTAGTCACTGAAATGTGTTGTTCTAGAAACTAGAAAA  614

seq1  TGAGATCTATTATTTTTTATTTTTTCTAGGAGGAAATATAAAGGGTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTATTATTTTTTATTTTTTCTAGGAGGAAATATAAAGGGTGGCA  664

seq1  TGTTATTTGATCCAAATGAGTGAAAAGTGATCTCTTTTGTATTGTAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTGATCCAAATGAGTGAAAAGTGATCTCTTTTGTATTGTAGATG  714

seq1  CCCAAAGGAGGTGGTCTACAACTGCTGAGGTAGCTGTAGAGCTTTCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGAGGTGGTCTACAACTGCTGAGGTAGCTGTAGAGCTTTCTCCT  764

seq1  GAGGTAGCAAAAAAAAAAAAAAAAAAAAAGACAGTGGAATGTCTTTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGCAAAAAAAAAAAAAAAAAAAAAGACAGTGGAATGTCTTTCCTT  814

seq1  CGATAACAAGTGTTTGATGAAAGCTGTCATTCTTTGATTTTATGAATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAACAAGTGTTTGATGAAAGCTGTCATTCTTTGATTTTATGAATATG  864

seq1  TCTTTAGAGTTTTATTTGAAGAAGTACTCTTTAAAAATATAAGCTTTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAGTTTTATTTGAAGAAGTACTCTTTAAAAATATAAGCTTTAAA  914

seq1  TCTTTTCTTCATGTTTGAGTACATTTAACAGCCCTTCAGTACACATTTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTCATGTTTGAGTACATTTAACAGCCCTTCAGTACACATTTCA  964

seq1  GACAGCAGGTGTGATGTTTGCTGCCTGGGAGAATAGAAGGGAACGAAAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGGTGTGATGTTTGCTGCCTGGGAGAATAGAAGGGAACGAAAAG  1014

seq1  AATTC  1055
      |||||
seq2  AATTC  1019