BAC Information

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BAC

Clone NameB6Ng01-014P23
Chromosome4 (Build37)X (Build37)
Map Location 23,461,950 - 23,462,72644,058,963 - 44,059,297
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700025O08Rik, LOC625462, LOC383998
Downstream geneLOC100040464, LOC623873, LOC664973, F730047E07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014P23.bB6Ng01-014P23.g
ACCDH849385DH849386
length771677
definitionDH849385|Mus musculus domesticus DNA, BAC clone: B6Ng01-014P23, 5' end.DH849386|Mus musculus domesticus DNA, BAC clone: B6Ng01-014P23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,461,950 - 23,462,726)(44,058,963 - 44,059,297)
sequence
gaattctaatttcaaatcccaaatattcctttgttcactcatgtgtctat
atcaggtgtttatttttatcgtatacagttaatattctgggtaattctca
atagagtacgctctatggggactaggggagatgttttcttgtccattaat
attgtttttagtttttggtttggtaatgtcacctggagatattgacttat
ttgtttttgtgtctgatgggagaatgccttaccttagttggagccagggc
agaaggtggactactaagataggctgggtaaaactccacacatgagtgtt
tatttgcaccagacaaaaatggctcctaaatcatgggtaaggcagttggt
gtgaagacagtagtaggtagtgtgagtagtgggaaagggaaaagccaatt
gttttgcaaagtaggcttgtgaataaagtagattcataagctgtaggcct
ggaggtaggcaggggaaaaggtagacccacctagcaggcagggctggggc
tactcagcattattgagtttgttgatcaattctttagtatccccatttag
agattgttggcctgttaaatgcaaatacacggcacaattttaaagtaata
aatttcattagttagtactttgtcatcattgggaaataatgatttaccag
acctgacatatttctagcatcttttaatttttagttttgatgatattatt
ggctcacctttggtgcttgtataccataattcagtacgtaagcttacttt
aagtttttctacaagttaacc
gaattctcacccgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatttcacaccagtcaaaatggctaagatcaaaaattcaggtgacagc
agatgctggtgagtatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccggaggatcccactttttctatttctatg
gagaattgagttggaatttgatggggattatatggaatctgtagaatgca
tttggtaagatagccatttttactatgttaatcctgccaatccatgaaca
tgggagatttttccatcgtgtgaagtcttctttgatttctttcatcagac
tagaagttcttgtcatacagatcattcacttgcttggttagagtcacagc
aagatattttatattagccaggcaggggtggcccatgcctttaatcccag
cacttgggaagcagaggcaggtggatttctgagtttaaaggacagcctga
tctacagactgagttccaggacagccagggctatactgagaaaccctgtc
tctaaaacaaaaaaaaaaaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_23461950_23462726
seq2: B6Ng01-014P23.b_47_817

seq1  GAATTCTAATTTCAAATCCCAAATATTCCTTTGTTCACTCATGTGTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTTCAAATCCCAAATATTCCTTTGTTCACTCATGTGTCTAT  50

seq1  ATCAGGTGTTTATTTTTATCGTATACAGTTAATATTCTGGGTAATTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTGTTTATTTTTATCGTATACAGTTAATATTCTGGGTAATTCTCA  100

seq1  ATAGAGTACGCTCTATGGGGACTAGGGGAGATGTTTTCTTGTCCATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTACGCTCTATGGGGACTAGGGGAGATGTTTTCTTGTCCATTAAT  150

seq1  ATTGTTTTTAGTTTTTGGTTTGGTAATGTCACCTGGAGATATTGACTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTAGTTTTTGGTTTGGTAATGTCACCTGGAGATATTGACTTAT  200

seq1  TTGTTTTTGTGTCTGATGGGAGAATGCCTTACCTTAGTTGGAGCCAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTGTCTGATGGGAGAATGCCTTACCTTAGTTGGAGCCAGGGC  250

seq1  AGAAGGTGGACTACTAAGATAGGCTGGGTAAAACTCCACACATGAGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGGACTACTAAGATAGGCTGGGTAAAACTCCACACATGAGTGTT  300

seq1  TATTTGCACCAGACAAAAATGGCTCCTAAATCATGGGTAAGGCAGTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCACCAGACAAAAATGGCTCCTAAATCATGGGTAAGGCAGTTGGT  350

seq1  GTGAAGACAGTAGTAGGTAGTGTGAGTAGTGGGAAAGGGAAAAGCCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGACAGTAGTAGGTAGTGTGAGTAGTGGGAAAGGGAAAAGCCAATT  400

seq1  GTTTTGCAAAGTAGGCTTGTGAATAAAGTAGATTCATAAGCTGTAGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCAAAGTAGGCTTGTGAATAAAGTAGATTCATAAGCTGTAGGCCT  450

seq1  GGAGGTAGGCAGGGGAAAAGGTAGACCCACCTAGCAGGCAGGGCTGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGGCAGGGGAAAAGGTAGACCCACCTAGCAGGCAGGGCTGGGGC  500

seq1  TACTCAGCATTATTGAGTTTGTTGATCAATTCTTTAGTATCCCCATTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCATTATTGAGTTTGTTGATCAATTCTTTAGTATCCCCATTTAG  550

seq1  AGATTGTTGGCCTGTTAAATGCAAATACACGGCACAATTTTAAAGTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTGGCCTGTTAAATGCAAATACACGGCACAATTTTAAAGTAATA  600

seq1  AATTTCATTAGTTAGTAC-TTGTCATCATTGGTAAATAATGATTTACCAG  649
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  AATTTCATTAGTTAGTACTTTGTCATCATTGGGAAATAATGATTTACCAG  650

seq1  ACCTGACATTATTTCTAGCATCTTTT-ATTTTTAGTTTTGAATGATATTA  698
      |||||||| ||||||||||||||||| ||||||||||||| |||||||| 
seq2  ACCTGACA-TATTTCTAGCATCTTTTAATTTTTAGTTTTG-ATGATATT-  697

seq1  ATTGGCTCACCTTTTGGTGCTTGTATACCATTAATTCAGTACCGTAAGCT  748
      ||||||||||| |||||||||||||||||| |||||||||| ||||||||
seq2  ATTGGCTCACC-TTTGGTGCTTGTATACCA-TAATTCAGTA-CGTAAGCT  744

seq1  TACTTTTAAGTTTTTCTTACATGTTAACC  777
      ||| |||||||||||| |||| |||||||
seq2  TAC-TTTAAGTTTTTC-TACAAGTTAACC  771

seq1: chrX_44058963_44059297
seq2: B6Ng01-014P23.g_262_744 (reverse)

seq1  TTTTGTTTTTGTTTTTGTATTTGTTTTTCGAGACAGGGTTTCTCTGTGTA  50
      |||| ||||| |||||   |||| |||| ||||||||||||||| || ||
seq2  TTTTTTTTTTTTTTTT---TTTG-TTTTAGAGACAGGGTTTCTCAGTATA  46

seq1  GCCCTGGCTGTCCTGGAACTCAGACTG-------------CCCTCAAACT  87
      ||||||||||||||||||||||| |||             || | |||||
seq2  GCCCTGGCTGTCCTGGAACTCAGTCTGTAGATCAGGCTGTCCTTTAAACT  96

seq1  CAGAAATCTGCCTGCATCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTG  137
      ||||||||  ||||| ||||| ||||||||||||||||||||||  || |
seq2  CAGAAATCCACCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGCATGGG  146

seq1  CCTTTCCAGCTTGTGGCTATTATAAATAAGGCTGCTATG---------AA  178
      ||   || ||   |||||| ||||||  |   |||| ||         ||
seq2  CCACCCCTGC--CTGGCTAATATAAAATATCTTGCTGTGACTCTAACCAA  194

seq1  CATAGTGGAGCATGTGT---------CCTTC-------------------  200
         |||| |  || |||          ||||                   
seq2  GCAAGTGAATGATCTGTATGACAAGAACTTCTAGTCTGATGAAAGAAATC  244

seq1  ----------TTACCAGTTGGAA--------CATCTTC------------  220
                | ||  | |||||        ||| |||            
seq2  AAAGAAGACTTCACACGATGGAAAAATCTCCCATGTTCATGGATTGGCAG  294

seq1  -----------------TGGATAT--------------------------  227
                       ||| |||                          
seq2  GATTAACATAGTAAAAATGGCTATCTTACCAAATGCATTCTACAGATTCC  344

seq1  -----ATGCCCA--------------------------GGAGAGGTATTG  246
           || ||||                            | ||  |  |
seq2  ATATAATCCCCATCAAATTCCAACTCAATTCTCCATAGAAATAGAAAAAG  394

seq1  CTGGATCCTCTGGTAGTACTATGTCCAGTTTTCTGAGGAACCGCCAGACT  296
        |||||||| |||||||||||||||| ||||||||||||| ||||||||
seq2  TGGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACTGCCAGACT  444

seq1  GATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAA  335
      |||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAA  483