BAC Information

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BAC

Clone NameB6Ng01-016H11
ChromosomeX (Build37)
Map Location 160,451,447 - 160,579,901
singlet/doubletdoublet
Overlap geneCar5b, Siah1b, Tmem27, Ace2
Upstream geneCtps2, LOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2
Downstream geneBmx, Pir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045, Glra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016H11.bB6Ng01-016H11.g
ACCDH850420DH850421
length1,134984
definitionDH850420|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H11, 5' end.DH850421|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,578,658 - 160,579,901)(160,451,447 - 160,452,432)
sequence
gaattcaagtttacccagctaaaaagtggtacagccaggatctggatgtc
agctccaggctaggctttcaagtataatattagtctcaccttgaaccatt
cagctcagaaaatctacagtacacgttggtgatctccaacagaaataaaa
taaaaactgaggggaaaaaaagttacactaaaaacaacaccggtaagacc
aaactattagagcagttaaaagcaactcatttggcaactacattgtcaaa
gtctctgtggtttcttaaattttagaaaactgggagggggcatagaattt
caaaggaaacaggcatcctcagacccactctgttctatgaatggcaataa
tttaaacacacagccccctgatcatttaaaagacaggaagttttgaagct
accgttttgaaggaaagcattgctggaagaagaaaaaaaagagtcttttc
ttaaatagttgctcaattttccaccacttaactatacttaaaaggcactt
caggatcagtgagaaaaaaaaaagttctaagtccttgcacttgtcaaaca
aaatatgctgctttcccagagtaggctgagattttttgggactagtttaa
ttatagcttttcttctgtgacctttggaaattcctcagagctctgtgtca
atgaaagaaggaattcccaggtccagtttcacctaagccatggttacctt
aattactaagctgctgccttcagtaaaccccagttgcatttttcagttaa
tatgtcatttgtagttctcggatagacctgttggcattataagctaaaga
aaattattggctcaataacgacttagaacatttccatgaatgctttacat
accaaatataatgagaatagtgatggcaactttattaaacattttcactc
atctttggaatctgggcaaataattcattcataacaatttccagatgaac
tctaaggtcaattgaatttagccatctgggagactaggatcagagctaca
gaggcagtcactcatcctcacacttgagagatcttttatgattccttatc
agttttataggcagtaattctgatctttaggagcatcatacccctgggta
gcctcagacttacattctttttgggcattttcct
gaattcacactctggatagtatgtgggcatgcttgtaggatgccacaccc
aacaaccagaaatttcttatgactcaggccagtttctcttaacgagaaga
cacccagtgctgagggtaagggaactttcagttaacatagatttatagag
cagtttttgaatcccaggcttaagtgagattaataccgttgtgggcaagc
attttcatttacccgtcttttacacatggagtcagggaaaaacttaggtc
tcagtgcaggccaacattcaagacatctgtgtggggctttgttgcaatgt
tttattttctggtagtggaaatttcctctttagttagttagttagcgacc
tcatctgcccataaactcaaatgaaccgtgtcacaaatgcattctttctc
ctcatctcaatggttggttcttatccagggggcaattttgttccctagaa
ttcatagagaaatatctacttttggtttttatatttgggggcaatgggag
cctgggctcgagggagtaaatatacctccccaccccccagccctgtgccg
gtgccaaggtagagaattcctgcaacaccatgctatggacaatcactcga
gtctccgagggagcagcagggcgttgaaggaagaacatatgctgcctcat
ttcatcgcccatgtttacagttgagcacacaattgcaagctggtcagcta
caattaactcctggatttataactccagacagaatattttggagcatgaa
cacaatgacccacttgcaaaaccctatatgcaaattctataaatgtaaga
tccagtgcaacagccaggcagtggtggtgcaggcctttagtcccagcacc
catgatgcagaggcaggcagatctttgtgagtacaagaccaccctggtct
atagagagatttcaggtaagccagggctacacagagatacccttgtcctc
aaaaccattgatggatggatggatggatggatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_160578658_160579901
seq2: B6Ng01-016H11.b_41_1174 (reverse)

seq1  AGGAAAATGCCAAGACATTTTTAAACAACTTTAATCAGGAAGCTGAAGAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTCTTATCAAAGTTCACTTGCTTCTTGGAATTATAATACTAACATTAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGAAGAAAATGCCC-AAAAGATGGTAAGTTCTTGAGGCTACCCAGGGGGT  149
        | |||||||||| ||||||  ||||||   ||||||||||||||||  
seq2  --AGGAAAATGCCCAAAAAGAATGTAAGT--CTGAGGCTACCCAGGGG--  44

seq1  TATTGATTGCTTCTTAAAGATCAGAATTACTGCCTATAAAACTGGATAAG  199
      || ||| ||| || ||||||||||||||||||||||||||||| ||||||
seq2  TA-TGA-TGC-TCCTAAAGATCAGAATTACTGCCTATAAAACT-GATAAG  90

seq1  GAAATCAT-AGAGATCTCTCAAGTGTGAGGATGAGTGACTGCCTCTGTAG  248
      | |||||| | |||||||||||||||||||||||||||||||||||||||
seq2  G-AATCATAAAAGATCTCTCAAGTGTGAGGATGAGTGACTGCCTCTGTAG  139

seq1  CTCTGATCCTAGTCTCCCAGATGGCTAAATTCAATTGACCTTAGAGTTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATCCTAGTCTCCCAGATGGCTAAATTCAATTGACCTTAGAGTTCA  189

seq1  TCTGGAAAATTGTTATGAATGAATTATTTGCCCAGATTCCAAAGATGAGT  348
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGG-AAATTGTTATGAATGAATTATTTGCCCAGATTCCAAAGATGAGT  238

seq1  GAAAATGTTTAATAAAGTTGCCATCACTATTCTCATTATATTTGGTATGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTTAATAAAGTTGCCATCACTATTCTCATTATATTTGGTATGT  288

seq1  AAAGCATTCATGGAAATGTTCTAAGTCGTTATTGAGCCAATAATTTTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTCATGGAAATGTTCTAAGTCGTTATTGAGCCAATAATTTTCTT  338

seq1  TAGCTTATAATGCCAACAGGTCTATCCGAGAACTACAAATGACATATTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATAATGCCAACAGGTCTATCCGAGAACTACAAATGACATATTAA  388

seq1  CTGAAAAATGCAACTGGGGTTTACTGAAGGCAGCAGCTTAGTAATTAAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATGCAACTGGGGTTTACTGAAGGCAGCAGCTTAGTAATTAAGG  438

seq1  TAACCATGGCTTAGGTGAAACTGGACCTGGGAATTCCTTCTTTCATTGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGGCTTAGGTGAAACTGGACCTGGGAATTCCTTCTTTCATTGAC  488

seq1  ACAGAGCTCTGAGGAATTTCCAAAGGTCACAGAAGAAAAGCTATAATTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTCTGAGGAATTTCCAAAGGTCACAGAAGAAAAGCTATAATTAA  538

seq1  ACTAGTCCCAAAAAATCTCAGCCTACTCTGGGAAAGCAGCATATTTTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCCCAAAAAATCTCAGCCTACTCTGGGAAAGCAGCATATTTTGTT  588

seq1  TGACAAGTGCAAGGACTTAGAACTTTTTTTTTTCTCACTGATCCTGAAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTGCAAGGACTTAGAACTTTTTTTTTTCTCACTGATCCTGAAGT  638

seq1  GCCTTTTAAGTATAGTTAAGTGGTGGAAAATTGAGCAACTATTTAAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTAAGTATAGTTAAGTGGTGGAAAATTGAGCAACTATTTAAGAAA  688

seq1  AGACTCTTTTTTTTCTTCTTCCAGCAATGCTTTCCTTCAAAACGGTAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTTTTTTTCTTCTTCCAGCAATGCTTTCCTTCAAAACGGTAGCT  738

seq1  TCAAAACTTCCTGTCTTTTAAATGATCAGGGGGCTGTGTGTTTAAATTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTTCCTGTCTTTTAAATGATCAGGGGGCTGTGTGTTTAAATTAT  788

seq1  TGCCATTCATAGAACAGAGTGGGTCTGAGGATGCCTGTTTCCTTTGAAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTCATAGAACAGAGTGGGTCTGAGGATGCCTGTTTCCTTTGAAAT  838

seq1  TCTATGCCCCCTCCCAGTTTTCTAAAATTTAAGAAACCACAGAGACTTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCCCCCTCCCAGTTTTCTAAAATTTAAGAAACCACAGAGACTTTG  888

seq1  ACAATGTAGTTGCCAAATGAGTTGCTTTTAACTGCTCTAATAGTTTGGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTAGTTGCCAAATGAGTTGCTTTTAACTGCTCTAATAGTTTGGTC  938

seq1  TTACCGGTGTTGTTTTTAGTGTAACTTTTTTTCCCCTCAGTTTTTATTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGGTGTTGTTTTTAGTGTAACTTTTTTTCCCCTCAGTTTTTATTTT  988

seq1  ATTTCTGTTGGAGATCACCAACGTGTACTGTAGATTTTCTGAGCTGAATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTGGAGATCACCAACGTGTACTGTAGATTTTCTGAGCTGAATG  1038

seq1  GTTCAAGGTGAGACTAATATTATACTTGAAAGCCTAGCCTGGAGCTGACA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGTGAGACTAATATTATACTTGAAAGCCTAGCCTGGAGCTGACA  1088

seq1  TCCAGATCCTGGCTGTACCACTTTTTAGCTGGGTAAACTTGAATTC  1244
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATCCTGGCTGTACCACTTTTTAGCTGGGTAAACTTGAATTC  1134

seq1: chrX_160451447_160452432
seq2: B6Ng01-016H11.g_65_1048

seq1  GAATTCACACTCTGGATAGTATGTGGGCATGCTTGTAGGATGCCACACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCTGGATAGTATGTGGGCATGCTTGTAGGATGCCACACCC  50

seq1  AACAACCAGAAATTTCTTATGACTCAGGCCAGTTTCTCTTAACGAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAGAAATTTCTTATGACTCAGGCCAGTTTCTCTTAACGAGAAGA  100

seq1  CACCCAGTGCTGAGGGTAAGGGAACTTTCAGTTAACATAGATTTATAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGCTGAGGGTAAGGGAACTTTCAGTTAACATAGATTTATAGAG  150

seq1  CAGTTTTTGAATCCCAGGCTTAAGTGAGATTAATACCGTTGTGGGCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTGAATCCCAGGCTTAAGTGAGATTAATACCGTTGTGGGCAAGC  200

seq1  ATTTTCATTTACCCGTCTTTTACACATGGAGTCAGGGAAAAACTTAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTACCCGTCTTTTACACATGGAGTCAGGGAAAAACTTAGGTC  250

seq1  TCAGTGCAGGCCAACATTCAAGACATCTGTGTGGGGCTTTGTTGCAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCAGGCCAACATTCAAGACATCTGTGTGGGGCTTTGTTGCAATGT  300

seq1  TTTATTTTCTGGTAGTGGAAATTTCCTCTTTAGTTAGTTAGTTAGCGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTGGTAGTGGAAATTTCCTCTTTAGTTAGTTAGTTAGCGACC  350

seq1  TCATCTGCCCATAAACTCAAATGAACCGTGTCACAAATGCATTCTTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCCCATAAACTCAAATGAACCGTGTCACAAATGCATTCTTTCTC  400

seq1  CTCATCTCAATGGTTGGTTCTTATCCAGGGGGCAATTTTGTTCCCTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCAATGGTTGGTTCTTATCCAGGGGGCAATTTTGTTCCCTAGAA  450

seq1  TTCATAGAGAAATATCTACTTTTGGTTTTTATATTTGGGGGCAATGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAGAAATATCTACTTTTGGTTTTTATATTTGGGGGCAATGGGAG  500

seq1  CCTGGGCTCGAGGGAGTAAATATACCTCCCCACCCCCCAGCCCTGTGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTCGAGGGAGTAAATATACCTCCCCACCCCCCAGCCCTGTGCCG  550

seq1  GTGCCAAGGTAGAGAATTCCTGCAACACCATGCTATGGACAATCACTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGGTAGAGAATTCCTGCAACACCATGCTATGGACAATCACTCGA  600

seq1  GTCTCCGAGGGAGCAGCAGGGCGTTGAAGGAAGAACATATGCTGCCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCGAGGGAGCAGCAGGGCGTTGAAGGAAGAACATATGCTGCCTCAT  650

seq1  TTCATCGCCCATGTTTACAGTTGAGCACACAATTGCAAGCTGGTCAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCGCCCATGTTTACAGTTGAGCACACAATTGCAAGCTGGTCAGCTA  700

seq1  CAATTAACTCCTGGATTTATAACTCCAGACAGAATATTTTGGAGCATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACTCCTGGATTTATAACTCCAGACAGAATATTTTGGAGCATGAA  750

seq1  CACAATGACCCACTTGCAAAACCCTATATGCAAATTCTATAAATGTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGACCCACTTGCAAAACCCTATATGCAAATTCTATAAATGTAAGA  800

seq1  TCCAGTGCAACAGCCAGGCAGTGGTGGTGCAGGCCTTTAGTCCCAGCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCAACAGCCAGGCAGTGGTGGTGCAGGCCTTTAGTCCCAGCACC  850

seq1  CATGATGCAGAGGCAGGCAGATCTCTGTGAGTACAAGACCACCCTGGTCT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATGATGCAGAGGCAGGCAGATCTTTGTGAGTACAAGACCACCCTGGTCT  900

seq1  ATAGAGAGAGTTTCAGGGTAGCCAGGGCTACACAGAGATACCC-TGT-CT  948
      ||||||||| |||||||  |||||||||||||||||||||||| ||| ||
seq2  ATAGAGAGA-TTTCAGGTAAGCCAGGGCTACACAGAGATACCCTTGTCCT  949

seq1  CAAAAAACCAATAGATGGATGGATGGATGGATGGATGG  986
      |||||   | || |||||||||||||||||||||||||
seq2  CAAAA---CCATTGATGGATGGATGGATGGATGGATGG  984