BAC Information

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BAC

Clone NameB6Ng01-018J03
ChromosomeX (Build37)
Map Location 101,299,633 - 101,438,126
singlet/doubletdoublet
Overlap geneC77370
Upstream geneEG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12
Downstream geneVcp-ps, EG621542, Uprt, Zdhhc15, Magee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018J03.bB6Ng01-018J03.g
ACCDH851933DH851934
length7431,078
definitionDH851933|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J03, 5' end.DH851934|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,299,633 - 101,300,375)(101,437,054 - 101,438,126)
sequence
gaattcttacaatggtatgcaatgaaggattattcaatactttcttgtca
cctccttaaagatacttctacatactgggagatttggaacacagatttat
gtttcacacttagaagtagctaggggaatgtaaattcagttttcatctaa
ttttcttacattttactaattgcctataaaatatttcttctgttaaagga
agactgttttaatcactcttcattaggtgattcattaggcattcattagg
gatttcagtaagataccaactgaaaaaaaatctaactatatccatgtgat
ataattgctactggcctttgtatcaatcagaaaaagactagatttttttc
tctaatgttaactttactcaaagtgtccaagtgaactgaacttaagcaaa
tctgtgtctataaataggcttgaaacaatataccacatgatctagtgaaa
aatcatgcttcatagatgtgataaaattttgtgccttttggcatttcttg
actaacatgataaaactaccttttattttcacagtatattataggctata
aagatgtcacatctgttattttatttggtctgtgcaataaaattataaat
tgggcattatcttttatgggaggagaaataatcttaagaatcagatgaat
taagagagacccgacaaatcctaaaagctaggaagttgaaaaaacaagat
ctgattccggtatggaaggagggaaagagggagagatgagata
gaattcacagctgaatacttgaaactagtaacctcagttgagacagaaca
tggaatgattttccacctatgggttactttacttaagataatcttgttta
gttttattaatgtatttgaaatgtttatttttctttacagatgaatacca
ttcaattgtgtatatgtgccacatcttcattatccatttgtcagtttgtt
attcccttccttagctattgtgaatagagcatcaatgaacatggctgagc
aagtgtctgtgaagtaggatgttgagtcttcagggcatataccaaagagt
ggtagagctgggtcatatggcagatctatttttagctttggagggattat
ctacattgattttcagagtgacagcactagtttaaaatcccagcaacagc
aaatgagggttctctttccctacatcctctagtaactcacacaaatctca
ggcatatgactactgtattctaaacagtaccctgcaagttcaaggcatat
tgaatgtcgtaataaacctccaataaggagacatcagatctaagttctta
gcacattttgtattggcctgaatagtttcttttgatatttttcatgtcat
gcacacatcaggtaacctggacccagaaggacaaatgtatgttttgtatc
gtctgaggttcctagatttaaattttacttcatatatgagtacataacct
gaagtaaatgcagaaacatgacccctttcacaccatgcacacataggaaa
tttagggattctctcagcttcctgaagtgtgtaaggtaaattatagtttg
tttctggtttaggagcttacgtccttgcaagctctgatccatgtttccaa
gggctgaaataattgttctggggtctattttgttacctattgatggagaa
ttggctactcaaaggcattttaacaggtggctttgtagtaataaattctt
taatctgttttatcatgggaatttttttctcttccatttgctttaatttg
ggatataatagccttggatggacagtttgtcttcatactgagtacatctt
tcaggccctttggctcaagttctgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_101299633_101300375
seq2: B6Ng01-018J03.b_46_788

seq1  GAATTCTTACAATGGTATGCAATGAAGGATTATTCAATACTTTCTTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAATGGTATGCAATGAAGGATTATTCAATACTTTCTTGTCA  50

seq1  CCTCCTTAAAGATACTTCTACATACTGGGAGATTTGGAACACAGATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTAAAGATACTTCTACATACTGGGAGATTTGGAACACAGATTTAT  100

seq1  GTTTCACACTTAGAAGTAGCTAGGGGAATGTAAATTCAGTTTTCATCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACACTTAGAAGTAGCTAGGGGAATGTAAATTCAGTTTTCATCTAA  150

seq1  TTTTCTTACATTTTACTAATTGCCTATAAAATATTTCTTCTGTTAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTACATTTTACTAATTGCCTATAAAATATTTCTTCTGTTAAAGGA  200

seq1  AGACTGTTTTAATCACTCTTCATTAGGTGATTCATTAGGCATTCATTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTTTAATCACTCTTCATTAGGTGATTCATTAGGCATTCATTAGG  250

seq1  GATTTCAGTAAGATACCAACTGAAAAAAAATCTAACTATATCCATGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTAAGATACCAACTGAAAAAAAATCTAACTATATCCATGTGAT  300

seq1  ATAATTGCTACTGGCCTTTGTATCAATCAGAAAAAGACTAGATTTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGCTACTGGCCTTTGTATCAATCAGAAAAAGACTAGATTTTTTTC  350

seq1  TCTAATGTTAACTTTACTCAAAGTGTCCAAGTGAACTGAACTTAAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTTAACTTTACTCAAAGTGTCCAAGTGAACTGAACTTAAGCAAA  400

seq1  TCTGTGTCTATAAATAGGCTTGAAACAATATACCACATGATCTAGTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTATAAATAGGCTTGAAACAATATACCACATGATCTAGTGAAA  450

seq1  AATCATGCTTCATAGATGTGATAAAATTTTGTGCCTTTTGGCATTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGCTTCATAGATGTGATAAAATTTTGTGCCTTTTGGCATTTCTTG  500

seq1  ACTAACATGATAAAACTACCTTTTATTTTCACAGTATATTATAGGCTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACATGATAAAACTACCTTTTATTTTCACAGTATATTATAGGCTATA  550

seq1  AAGATGTCACATCTGTTATTTTATTTGGTCTGTGCAATAAAATTATAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCACATCTGTTATTTTATTTGGTCTGTGCAATAAAATTATAAAT  600

seq1  TGGGCATTATCTTTTATGGGAGGAGAAATAATCTTAAGAATCAGATGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTATCTTTTATGGGAGGAGAAATAATCTTAAGAATCAGATGAAT  650

seq1  TAAGAGAGACCCGACAAATCCTAAAAGCTAGGAAGTTGAAAAAACAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGACCCGACAAATCCTAAAAGCTAGGAAGTTGAAAAAACAAGAT  700

seq1  CTGATTCCGGTATGGAAGGAGGGAAAGAGGGAGAGATGAGATA  743
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCGGTATGGAAGGAGGGAAAGAGGGAGAGATGAGATA  743

seq1: chrX_101437054_101438126
seq2: B6Ng01-018J03.g_89_1146 (reverse)

seq1  TCAGCAGAAACCTTTAAAGCCAAAGGGCCTGGAAAGATGTACTCCAAGTA  50
      |||||||||  |||   ||||||||||||| |||||||||||||  ||| 
seq2  TCAGCAGAA--CTT--GAGCCAAAGGGCCT-GAAAGATGTACTC--AGT-  42

seq1  ATGAAAGACCACAACTGTCAATCC-AGGCTATTAATAT-CCAAATTAAAG  98
      ||| |||||   ||||||| |||| |||||||| |||| |||||||||||
seq2  ATG-AAGAC--AAACTGTCCATCCAAGGCTATT-ATATCCCAAATTAAAG  88

seq1  CAAATGGAAAGAGAAAAAAAATTCCCATGATAAAAACAGATTAAAGGAAT  148
      ||||||| ||||| ||||||||||||||||| ||||||||||||| ||||
seq2  CAAATGG-AAGAG-AAAAAAATTCCCATGAT-AAAACAGATTAAA-GAAT  134

seq1  TTATTACTACAAAGCCACCTGTTAAAAATGCCTTTGAGTAGCCAATTCTC  198
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTATTACTACAAAGCCACCTGTT-AAAATGCCTTTGAGTAGCCAATTCTC  183

seq1  CATCAATAGGTAACAAAATAGACCCCAGAACAATTATTTCAGCCCTTGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATAGGTAACAAAATAGACCCCAGAACAATTATTTCAGCCCTTGGA  233

seq1  AACATGGATCAGAGCTTGCAAGGACGTAAGCTCCTAAACCAGAAACAAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGATCAGAGCTTGCAAGGACGTAAGCTCCTAAACCAGAAACAAAC  283

seq1  TATAATTTACCTTACACACTTCAGGAAGCTGAGAGAATCCCTAAATTTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTACCTTACACACTTCAGGAAGCTGAGAGAATCCCTAAATTTCC  333

seq1  TATGTGTGCATGGTGTGAAAGGGGTCATGTTTCTGCATTTACTTCAGGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGCATGGTGTGAAAGGGGTCATGTTTCTGCATTTACTTCAGGTT  383

seq1  ATGTACTCATATATGAAGTAAAATTTAAATCTAGGAACCTCAGACGATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTCATATATGAAGTAAAATTTAAATCTAGGAACCTCAGACGATAC  433

seq1  AAAACATACATTTGTCCTTCTGGGTCCAGGTTACCTGATGTGTGCATGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATACATTTGTCCTTCTGGGTCCAGGTTACCTGATGTGTGCATGAC  483

seq1  ATGAAAAATATCAAAAGAAACTATTCAGGCCAATACAAAATGTGCTAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATATCAAAAGAAACTATTCAGGCCAATACAAAATGTGCTAAGA  533

seq1  ACTTAGATCTGATGTCTCCTTATTGGAGGTTTATTACGACATTCAATATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGATCTGATGTCTCCTTATTGGAGGTTTATTACGACATTCAATATG  583

seq1  CCTTGAACTTGCAGGGTACTGTTTAGAATACAGTAGTCATATGCCTGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTTGCAGGGTACTGTTTAGAATACAGTAGTCATATGCCTGAGA  633

seq1  TTTGTGTGAGTTACTAGAGGATGTAGGGAAAGAGAACCCTCATTTGCTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGAGTTACTAGAGGATGTAGGGAAAGAGAACCCTCATTTGCTGT  683

seq1  TGCTGGGATTTTAAACTAGTGCTGTCACTCTGAAAATCAATGTAGATAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTTTAAACTAGTGCTGTCACTCTGAAAATCAATGTAGATAAT  733

seq1  CCCTCCAAAGCTAAAAATAGATCTGCCATATGACCCAGCTCTACCACTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAAGCTAAAAATAGATCTGCCATATGACCCAGCTCTACCACTCT  783

seq1  TTGGTATATGCCCTGAAGACTCAACATCCTACTTCACAGACACTTGCTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATATGCCCTGAAGACTCAACATCCTACTTCACAGACACTTGCTCA  833

seq1  GCCATGTTCATTGATGCTCTATTCACAATAGCTAAGGAAGGGAATAACAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTTCATTGATGCTCTATTCACAATAGCTAAGGAAGGGAATAACAA  883

seq1  ACTGACAAATGGATAATGAAGATGTGGCACATATACACAATTGAATGGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAAATGGATAATGAAGATGTGGCACATATACACAATTGAATGGTA  933

seq1  TTCATCTGTAAAGAAAAATAAACATTTCAAATACATTAATAAAACTAAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGTAAAGAAAAATAAACATTTCAAATACATTAATAAAACTAAAC  983

seq1  AAGATTATCTTAAGTAAAGTAACCCATAGGTGGAAAATCATTCCATGTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATCTTAAGTAAAGTAACCCATAGGTGGAAAATCATTCCATGTTC  1033

seq1  TGTCTCAACTGAGGTTACTAGTTTC  1073
      |||||||||||||||||||||||||
seq2  TGTCTCAACTGAGGTTACTAGTTTC  1058