BAC Information

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BAC

Clone NameB6Ng01-019A16
ChromosomeX (Build37)
Map Location 103,837,462 - 103,963,092
singlet/doubletdoublet
Overlap geneEG331493, LOC668490, LOC100042772
Upstream geneEG633570, Fgf16, Atrx, 2610529C04Rik, Cox7b, Atp7a, Tlr13, LOC671297, Pgk1, Taf9b, 5031408O05Rik, EG333563, LOC622494, Gm784, Cysltr1
Downstream geneLOC100043263, Zcchc5, Gpr23, P2ry10, A630033H20Rik, Gpr174, LOC668502, LOC622613, LOC385404, Itm2a, 4933401B06Rik, Tbx22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019A16.bB6Ng01-019A16.g
ACCDH852249DH852250
length1,1021,108
definitionDH852249|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A16, 5' end.DH852250|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,837,462 - 103,838,569)(103,961,959 - 103,963,092)
sequence
gaattcagtgcaatttacaatgttgtctggcaaaccaatgttgaaagcat
gctgtctgaccatgtggttcaacagaacagatctgtttcagcgaaattcc
tcactgcaaaacatgcacacgccatgaaagcttgtatcatttccctctcc
ctgttgctgatccagaacttctttcagtttctgtgtttgaagctcttctc
tggggattctatattctggtaatgcatcgtataacaaataatagttgtct
tgttcttcaaatggaaccttggcattgattcttatcacactgcaaaaatt
agtgatggactgttcagtgaaccatttcctccagtataaaatgtaccttc
ggaaacctgcaacgagctatacatcagctatgacaatcttatgctcgata
atcatgggcttcaaacgtttgtattgttcagccatggaaaaatgttcttc
acagaaaatacaaggcacaggtaaagacccctctaaagcggcggtgccac
ctggactctctggcagggaaagcggctctaggatatagtctttactgtct
tcataatacttgtgctcgattccaccgcggaccccagcctcctggggatc
cacaggaagccccttattttatttatttatttatttatttatttatttat
ttatttatctatttattattagataatttctttatatacatttcaaacgc
tatcttgaaaagttccctataccctccctccaccctgctcccctacctac
ccactcccacttcttggccccagcattcccatgtattggaacatataaag
tttgcaataccaaggggactctcttcccagtaatggctgactaggtcatc
ttctgctacatatgccgctagagatatgagctctggaggtactggttagt
tcatattgtagttccacctatagggttgcagacaaattcagctacttggg
tactttctctagcttctccattggggccctgggttcatctatagatgact
atgagcatacacttctgtatttgccaggcactggcataagcctcatacta
gaacagctataacaggtcctcaacaaatctttctggcaatgcaatatgtc
tg
gaattccttgctcctataatatccctaaaagcttaagcaaaatttgtgga
tgcatagccctgtcctagaactcactatacagaacaaggtaaccttaaac
tcagagagatcagccttaccctgcctcctgagtccggggattagtgtgtg
ctgccacacacagaaaaaaataagaccatgaaggtaagattaagaccaaa
tataatccattgttaaaacaaataagcacaagccgggcagtggtggcaca
cgcctttgatcccagaactctggaggcagaggcaggtggatttctgagtt
cgaggccaggctggtctacagagtgagttccaggacagccagggctatac
agggaaaccctgtctcgaaaaacaaaaaaacaaataaacaaaaacaacaa
caaataagcacaggccatgtgtttctcctttagttgcttactttttatca
accactatgcaagaagctaagctgcaggctttaaaaatattgatgaaaat
atctgaatacagtgtagaagactgaaaattaaaatacagtatgcagaata
tcacagtagtggtgaactctggctaccaggaaagcacagagaaggatgat
ttaagaaaggaagacactaggaaaggggatagcatttgaaatgtaaatga
agaaaacatctaattttaaaaaaggaaagaaaggaaggaagacaaatcaa
gaaggaagaaggataaagctaccagtagagggagcaagcagcaagtggaa
aaggatcagcactgcaaagccagccatactggggaacttctgagggtggt
tttaggaagtaattttaaaaagaaaacaacgttatagtgaaaaactcttt
ctccaagtgacatacttgggaattgacctgaagaaaacttctattgaatt
ttgagcaggtaatgacagaccagttattcaactttaaagaaagcagagca
gagattaagctggagaacaggcaggtcgactgtgtaagaaattccactat
aggttgcagaccctttagctcctggttatttcctagctcctccattgggg
ggcctgtgtcatcctatactgacatgtgagcatccacttcggttggctag
cccggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_103837462_103838569
seq2: B6Ng01-019A16.b_41_1142

seq1  GAATTCAGTGCAATTTACAATGTTGTCTGGCAAACCAATGTTGAAAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCAATTTACAATGTTGTCTGGCAAACCAATGTTGAAAGCAT  50

seq1  GCTGTCTGACCATGTGGTTCAACAGAACAGATCTGTTTCAGCGAAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGACCATGTGGTTCAACAGAACAGATCTGTTTCAGCGAAATTCC  100

seq1  TCACTGCAAAACATGCACACGCCATGAAAGCTTGTATCATTTCCCTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAAAACATGCACACGCCATGAAAGCTTGTATCATTTCCCTCTCC  150

seq1  CTGTTGCTGATCCAGAACTTCTTTCAGTTTCTGTGTTTGAAGCTCTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTGATCCAGAACTTCTTTCAGTTTCTGTGTTTGAAGCTCTTCTC  200

seq1  TGGGGATTCTATATTCTGGTAATGCATCGTATAACAAATAATAGTTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATTCTATATTCTGGTAATGCATCGTATAACAAATAATAGTTGTCT  250

seq1  TGTTCTTCAAATGGAACCTTGGCATTGATTCTTATCACACTGCAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCAAATGGAACCTTGGCATTGATTCTTATCACACTGCAAAAATT  300

seq1  AGTGATGGACTGTTCAGTGAACCATTTCCTCCAGTATAAAATGTACCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGACTGTTCAGTGAACCATTTCCTCCAGTATAAAATGTACCTTC  350

seq1  GGAAACCTGCAACGAGCTATACATCAGCTATGACAATCTTATGCTCGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTGCAACGAGCTATACATCAGCTATGACAATCTTATGCTCGATA  400

seq1  ATCATGGGCTTCAAACGTTTGTATTGTTCAGCCATGGAAAAATGTTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGGCTTCAAACGTTTGTATTGTTCAGCCATGGAAAAATGTTCTTC  450

seq1  ACAGAAAATACAAGGCACAGGTAAAGACCCCTCTAAAGCGGCGGTGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATACAAGGCACAGGTAAAGACCCCTCTAAAGCGGCGGTGCCAC  500

seq1  CTGGACTCTCTGGCAGGGAAAGCGGCTCTAGGATATAGTCTTTACTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCTCTGGCAGGGAAAGCGGCTCTAGGATATAGTCTTTACTGTCT  550

seq1  TCATAATACTTGTGCTCGATTCCACCGCGGACCCCAGCCTCCTGGGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATACTTGTGCTCGATTCCACCGCGGACCCCAGCCTCCTGGGGATC  600

seq1  CACAGGAAGCCCCTTATTTTATTTATTTATTTATTTATTTATTTATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAGCCCCTTATTTTATTTATTTATTTATTTATTTATTTATTTAT  650

seq1  TTATTTATCTATTTATTATTAGATAATTTCTTTATATACATTTCAAACGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATCTATTTATTATTAGATAATTTCTTTATATACATTTCAAACGC  700

seq1  TATCTTGAAAAGTTCCCTATACCCTCCCTCCACCCTGCTCCCCTACCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGAAAAGTTCCCTATACCCTCCCTCCACCCTGCTCCCCTACCTAC  750

seq1  CCACTCCCACTTCTTGGCCCCAGCATTCCCATGTATTGGAACATATAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCACTTCTTGGCCCCAGCATTCCCATGTATTGGAACATATAAAG  800

seq1  TTTGCAATACCAAGGGGACTCTCTTCCCAGTAATGGCTGACTAGGTCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATACCAAGGGGACTCTCTTCCCAGTAATGGCTGACTAGGTCATC  850

seq1  TTCTGCTACATATGCCGCTAGAGATATGAGCTCTGGAGGTACTGGTTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTACATATGCCGCTAGAGATATGAGCTCTGGAGGTACTGGTTAGT  900

seq1  TCATATTGTAGTTCCACCTATAGGGTTGCAGACAAATTCAGCTACTTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTGTAGTTCCACCTATAGGGTTGCAGACAAATTCAGCTACTTGGG  950

seq1  TACTTTCTCTAGCTTCTCCATTGGGGCCCTGGGTTCCATCTTATAGATGA  1000
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  TACTTTCTCTAGCTTCTCCATTGGGGCCCTGGGTT-CATC-TATAGATGA  998

seq1  CTATGAGCATACACTTCTGTATTTGCCAGGCACTGGCAT-AGCCTCATAC  1049
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTATGAGCATACACTTCTGTATTTGCCAGGCACTGGCATAAGCCTCATAC  1048

seq1  TAG-ACAGCTATAACAGGGTCCCTTCAACAAAATCTTTCTGGCATATGCA  1098
      ||| |||||||||||| |||||  ||||| |||||||||||||| |||||
seq2  TAGAACAGCTATAACA-GGTCC--TCAAC-AAATCTTTCTGGCA-ATGCA  1093

seq1  ATAGTGTCTG  1108
      ||| ||||||
seq2  ATA-TGTCTG  1102

seq1: chrX_103961959_103963092
seq2: B6Ng01-019A16.g_68_1175 (reverse)

seq1  ATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACA-GTCAGCTATAG  49
      ||||||||  ||||| |  || |||||||||||||||| ||||| |||||
seq2  ATGCCGGG--CTAGCCA--ACCGAAGTGGATGCTCACATGTCAG-TATAG  45

seq1  GATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAATACCCAAGGAG  99
      ||||  ||||||| |||||||||||||||||  || ||||| || |||||
seq2  GATG--ACACAGGCCCCCCAATGGAGGAGCT--AGGAAATAACC-AGGAG  90

seq1  CTAAAGGGGTCTGCAACCCTATAGGTGGAATTTTCTAACACAAGTCGACC  149
      ||||| |||||||||| |||||| |||||| ||||| |||| ||||||||
seq2  CTAAA-GGGTCTGCAA-CCTATA-GTGGAA-TTTCTTACAC-AGTCGACC  135

seq1  TGCCTTGTTTCTTCCAGCTTTATTCTTCTGCTCTGCTTTTCTTTTAAAGT  199
      |||| ||||   |||||||| ||   |||||||||||||   ||||||||
seq2  TGCC-TGTT--CTCCAGCTTAAT--CTCTGCTCTGCTTT--CTTTAAAGT  178

seq1  TGAATAACTGGTCTTGTCATTACCCTGCTCAAAATTCAATAGAAGTTTTT  249
      ||||||||||||| |||||||| |||||||||||||||||||||| ||||
seq2  TGAATAACTGGTC-TGTCATTA-CCTGCTCAAAATTCAATAGAAG-TTTT  225

seq1  CTTCAAGGTCAATTCCCAAGTATGTCACTTGGAGAAAGAGTTTTTCACTA  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTC-AGGTCAATTCCCAAGTATGTCACTTGGAGAAAGAGTTTTTCACTA  274

seq1  TAACGTTTGTTTTCTTTTTAAAATTACTTCCTAAAACCACCCTCAGAAGT  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACG-TTGTTTTCTTTTTAAAATTACTTCCTAAAACCACCCTCAGAAGT  323

seq1  TCCCCAGTATGGCTGGCTTTGCAGTGCTGATCCTTTTCCACTTGCTGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTATGGCTGGCTTTGCAGTGCTGATCCTTTTCCACTTGCTGCTT  373

seq1  GCTCCCTCTACTGGTAGCTTTATCCTTCTTCCTTCTTGATTTGTCTTCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTCTACTGGTAGCTTTATCCTTCTTCCTTCTTGATTTGTCTTCCT  423

seq1  TCCTTTCTTTCCTTTTTTAAAATTAGATGTTTTCTTCATTTACATTTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTTCCTTTTTTAAAATTAGATGTTTTCTTCATTTACATTTCAA  473

seq1  ATGCTATCCCCTTTCCTAGTGTCTTCCTTTCTTAAATCATCCTTCTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCCCCTTTCCTAGTGTCTTCCTTTCTTAAATCATCCTTCTCTGT  523

seq1  GCTTTCCTGGTAGCCAGAGTTCACCACTACTGTGATATTCTGCATACTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTGGTAGCCAGAGTTCACCACTACTGTGATATTCTGCATACTGT  573

seq1  ATTTTAATTTTCAGTCTTCTACACTGTATTCAGATATTTTCATCAATATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTTCAGTCTTCTACACTGTATTCAGATATTTTCATCAATATT  623

seq1  TTTAAAGCCTGCAGCTTAGCTTCTTGCATAGTGGTTGATAAAAAGTAAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCCTGCAGCTTAGCTTCTTGCATAGTGGTTGATAAAAAGTAAGC  673

seq1  AACTAAAGGAGAAACACATGGCCTGTGCTTATTTGTTGTTGTTTTTGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGGAGAAACACATGGCCTGTGCTTATTTGTTGTTGTTTTTGTTT  723

seq1  ATTTGTTTTTTTGTTTTTCGAGACAGGGTTTCCCTGTATAGCCCTGGCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTTTTGTTTTTCGAGACAGGGTTTCCCTGTATAGCCCTGGCTG  773

seq1  TCCTGGAACTCACTCTGTAGACCAGCCTGGCCTCGAACTCAGAAATCCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTCTGTAGACCAGCCTGGCCTCGAACTCAGAAATCCAC  823

seq1  CTGCCTCTGCCTCCAGAGTTCTGGGATCAAAGGCGTGTGCCACCACTGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCAGAGTTCTGGGATCAAAGGCGTGTGCCACCACTGCC  873

seq1  CGGCTTGTGCTTATTTGTTTTAACAATGGATTATATTTGGTCTTAATCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTGTGCTTATTTGTTTTAACAATGGATTATATTTGGTCTTAATCTT  923

seq1  ACCTTCATGGTCTTATTTTTTTCTGTGTGTGGCAGCACACACTAATCCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATGGTCTTATTTTTTTCTGTGTGTGGCAGCACACACTAATCCCC  973

seq1  GGACTCAGGAGGCAGGGTAAGGCTGATCTCTCTGAGTTTAAGGTTACCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGGAGGCAGGGTAAGGCTGATCTCTCTGAGTTTAAGGTTACCTT  1023

seq1  GTTCTGTATAGTGAGTTCTAGGACAGGGCTATGCATCCACAAATTTTGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTATAGTGAGTTCTAGGACAGGGCTATGCATCCACAAATTTTGCT  1073

seq1  TAAGCTTTTAGGGATATTATAGGAGCAAGGAATTC  1134
      |||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTTAGGGATATTATAGGAGCAAGGAATTC  1108