BAC Information

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BAC

Clone NameB6Ng01-019D19
ChromosomeX (Build37)
Map Location 53,607,896 - 53,768,531
singlet/doubletdoublet
Overlap geneZfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b
Upstream geneLOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik
Downstream geneGm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019D19.bB6Ng01-019D19.g
ACCDH852388DH852389
length1,1731,086
definitionDH852388|Mus musculus domesticus DNA, BAC clone: B6Ng01-019D19, 5' end.DH852389|Mus musculus domesticus DNA, BAC clone: B6Ng01-019D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,607,896 - 53,609,093)(53,767,964 - 53,768,531)
sequence
gaattcagctgacactaggagaacctgtgaagagccaggacagactcggg
ggatgtgttgttacacaaagcatttgtatttattttcgagtagttgtatt
accttcattttatattcttttaagaaatcaaatttttctgtatgaatatt
taattttagaacgtggccatcatactcaattataaatccatactactcat
tctgagttgcatgtgatttctttcttaatattgtaggaaaataatcacag
agcagcaatattcacattaccattcatgttcattttcatactttactctc
taaagcacattgccattcagtgcatttttaaaaatggatataattattaa
tgaattaagtaaaataaaactcaaaagaaaatatcctgcttaaaattata
taaaatgctttataaagtgatacaagacttattatcccattatttaaaat
ttaaagttttgctttttttaaaaaaatgaaggcatctcagtattgtgtat
gatatattggaaattaagtagaaaatcataagagaatggctagtgagaaa
ataaatgtaaaaatcatataagaaatcagttgagtctaccttaaagtgca
gaacatataccctgtcagtaaaaaatgacatttggggatagatagataga
tagatagatagatagatagatagatatgcccagctatagtaatgataact
catatagaagtgaagccttcatgacatgatctttgccaagtggagcttag
taaagtgattcgctgaacataggatgagaatagcatccctgaagtacctt
ctttcataaactctgtttttttatccttcatatttcattccactatatga
tttctttcacatcacattccacaattataaatcatctctgaagtttagta
gattaaagaagaaaatgaagaggggtgtttgtttaaaaaaatacaattcc
tacaagttgggaatttcagaagtttacagtgtttctggcttgttgtctga
gaagctagcagaccctcattccttgctaagggacctcttcaatatgtgtg
ttctccatgacagcacagctttccttctagggaagacattgcccgatgtt
gtataactggcccataccttcctctcgcaattttcatgacaagttccaga
tcacccactaagggggaagaaaa
gaattccataatttgagggagacttttttgtttcttttcctgttattttg
gctttgttttttgattggatattttctttatttacatttcaaatgttatc
ccctttcccggtttcccctctggaaaccctctatccacccccccccccaa
ttctcctgcttctatgagggtgttccctctcccacccatccaatcctgcc
ttcccgccctggcatccccctacactggggcatccagccttcaaaggccc
gaaggcctctcctcccattgatgtccgacaaggccatcctctgccacata
tgtggctgtagccatggatccctccatgtgtactctttggttggtggtcc
agtccctgggagctccaggggtctggctggttgacactgttgctccctcc
atggggctgcaaatcccctcagctccttcagtcccttctccaactcctcc
attggggaccccaaaatcagtgcaatggttggcttcaagcacccgcctct
gtatttgtcaggctctggcagagcctctctctcaggagacagccatatca
ggttcctgtcagcaagcacttgttggcatccacaatagtgtcttggtttg
ttgacagtatatgggatggatccccaggtgggtcagtctctgaatggcct
ttccttgagtctctgctccacattttgtctccatattttcttctgtaagt
attttgttcacccttctaaaaagcagttggtctttccttctttcttgagc
ttcatatgatctgtgaattgtatcttgggtattctgagcttttggggcta
atatccacttatcagtgagtgcataccatgttgtgatcttttgtgcctgg
gttacctcactcaggatgatatttttctagttccatcaatttgcctaaga
attcatgaagtcatttgtttttaatggctgagtcatacttcattgtgtaa
atgtaccacattttgtatcccattcctctgttgagggatatactggggtt
gtttggttttcttcctggtatttggcttttgaggggaacttatctggtta
tattttcttttattttggcagggtgggggtaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_53607896_53609093
seq2: B6Ng01-019D19.b_45_1217

seq1  GAATTCAGCTGACACTAGGAGAACCTGTGAAGAGCCAGGACAGACTCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGACACTAGGAGAACCTGTGAAGAGCCAGGACAGACTCGGG  50

seq1  GGATGTGTTGTTACACAAAGCATTTGTATTTATTTTCGAGTAGTTGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGTTGTTACACAAAGCATTTGTATTTATTTTCGAGTAGTTGTATT  100

seq1  ACCTTCATTTTATATTCTTTTAAGAAATCAAATTTTTCTGTATGAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATTTTATATTCTTTTAAGAAATCAAATTTTTCTGTATGAATATT  150

seq1  TAATTTTAGAACGTGGCCATCATACTCAATTATAAATCCATACTACTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAGAACGTGGCCATCATACTCAATTATAAATCCATACTACTCAT  200

seq1  TCTGAGTTGCATGTGATTTCTTTCTTAATATTGTAGGAAAATAATCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTGCATGTGATTTCTTTCTTAATATTGTAGGAAAATAATCACAG  250

seq1  AGCAGCAATATTCACATTACCATTCATGTTCATTTTCATACTTTACTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAATATTCACATTACCATTCATGTTCATTTTCATACTTTACTCTC  300

seq1  TAAAGCACATTGCCATTCAGTGCATTTTTAAAAATGGATATAATTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACATTGCCATTCAGTGCATTTTTAAAAATGGATATAATTATTAA  350

seq1  TGAATTAAGTAAAATAAAACTCAAAAGAAAATATCCTGCTTAAAATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAGTAAAATAAAACTCAAAAGAAAATATCCTGCTTAAAATTATA  400

seq1  TAAAATGCTTTATAAAGTGATACAAGACTTATTATCCCATTATTTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTTTATAAAGTGATACAAGACTTATTATCCCATTATTTAAAAT  450

seq1  TTAAAGTTTTGCTTTTTTTAAAAAAATGAAGGCATCTCAGTATTGTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTTGCTTTTTTTAAAAAAATGAAGGCATCTCAGTATTGTGTAT  500

seq1  GATATATTGGAAATTAAGTAGAAAATCATAAGAGAATGGCTAGTGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTGGAAATTAAGTAGAAAATCATAAGAGAATGGCTAGTGAGAAA  550

seq1  ATAAATGTAAAAATCATATAAGAAATCAGTTGAGTCTACCTTAAAGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTAAAAATCATATAAGAAATCAGTTGAGTCTACCTTAAAGTGCA  600

seq1  GAACATATACCCTGTCAGTAAAAAATGACATTTGGGGATAGATAGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATATACCCTGTCAGTAAAAAATGACATTTGGGGATAGATAGATAGA  650

seq1  TAGATAGATAGATAGATAGATAGATATGCCCAGCTATAGTAATGATAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATAGATATGCCCAGCTATAGTAATGATAACT  700

seq1  CATATAGAAGTGAAGCCTTCATGACATGATCTTTGCCAAGTGGAGCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGAAGTGAAGCCTTCATGACATGATCTTTGCCAAGTGGAGCTTAG  750

seq1  TAAAGTGATTCGCTGAACATAGGATGAGAATAGCATCCCTGAAGTACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGATTCGCTGAACATAGGATGAGAATAGCATCCCTGAAGTACCTT  800

seq1  CTTTCATAAACTCTGTTTTTTTATCCTTCATATTTCATTCCACTATATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAAACTCTGTTTTTTTATCCTTCATATTTCATTCCACTATATGA  850

seq1  TTTCTTTCACATCACATTCCACAATTATAAATCATCTCTGAAGTTTAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCACATCACATTCCACAATTATAAATCATCTCTGAAGTTTAGTA  900

seq1  GATTAAAGAAGAAAATGAAGAGGGGTGTTTGTTTAAAAAAATACAATTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGAAGAAAATGAAGAGGGGTGTTTGTTTAAAAAAATACAATTCC  950

seq1  TACAAGTTGGGAATTTCAGAAGTTTTACAGTGTTTCTGGCTTGGTGTCTG  1000
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  TACAAGTTGGGAATTTCAGAAG-TTTACAGTGTTTCTGGCTTGTTGTCTG  999

seq1  AG-AGCTAGCAGAACCCTCAATTCCTTGCTAAGGGGACCTC-TCCATATG  1048
      || ||||||||| |||||| |||||||||||| |||||||| || |||||
seq2  AGAAGCTAGCAG-ACCCTC-ATTCCTTGCTAA-GGGACCTCTTCAATATG  1046

seq1  TGTGTTCT-CATGACAGGCAGCAGGCTTCCCTCATAGGGAAGACATGTGC  1097
      |||||||| ||||||| ||| || |||| |||  |||||||||||| |||
seq2  TGTGTTCTCCATGACA-GCA-CA-GCTTTCCTTCTAGGGAAGACAT-TGC  1092

seq1  CCGTGATGTTGTTAGTAACCTGGCCACATACCTTCCCTTCTGCAATATTC  1147
      ||  ||||||||   ||| |||||| ||||||||||  || |||  ||| 
seq2  CC--GATGTTGT--ATAA-CTGGCC-CATACCTTCCTCTC-GCA--ATTT  1133

seq1  TCATTAGAACAAAGTCACAGATCCAACCCACACTTAAAGGGGGGAAGAAA  1197
      |||| |     ||||  ||||||  ||||||   |||  |||||||||||
seq2  TCATGA----CAAGTTCCAGATC--ACCCAC---TAA--GGGGGAAGAAA  1172

seq1  A  1198
      |
seq2  A  1173

seq1: chrX_53767964_53768531
seq2: B6Ng01-019D19.g_593_1152 (reverse)

seq1  TTCTTTCTCTCCCCCAACCCCTGCAAAAATAAAAAGAAAATATAAAACAA  50
      ||||||    ||||||  |||||| ||||| |||||||||||| || || 
seq2  TTCTTT---ACCCCCA--CCCTGCCAAAAT-AAAAGAAAATAT-AACCAG  43

seq1  GTAAGATTCCCCTCAAAAAAGCCAAAATAACAAGAAAGGAAACCAAAAAC  100
       |||| ||||||||  ||||||||||   || || ||| |||||||| | 
seq2  ATAAG-TTCCCCTC--AAAAGCCAAA--TACCAGGAAGAAAACCAAACA-  87

seq1  AACCCAG-ATATCCCTCAACAGAGGAAT-GGATACAGAAAATGTGGTACA  148
      | ||||| |||||||||||||||||||| ||||||  |||||||||||||
seq2  ACCCCAGTATATCCCTCAACAGAGGAATGGGATAC--AAAATGTGGTACA  135

seq1  TTTACACAATGGAGTATGACTCAGCCATTAAAAAC-AATGACTTCATGAA  197
      ||||||||||| ||||||||||||||||||||||| |||||||||||| |
seq2  TTTACACAATGAAGTATGACTCAGCCATTAAAAACAAATGACTTCATG-A  184

seq1  ATTCTTAGGCAAATTGATGGAACTAG-AAAATATCATCCTGAGTGAGGTA  246
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTCTTAGGCAAATTGATGGAACTAGAAAAATATCATCCTGAGTGAGGTA  234

seq1  ACCCAGGCACAAAAGATCAC-ACATGGTATGCACTCACTGATAAGTGGAT  295
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCCAGGCACAAAAGATCACAACATGGTATGCACTCACTGATAAGTGGAT  284

seq1  ATTAGCCCC-AAAGCTCAGAATACCCAAGATACAATTCACAGATCATATG  344
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCCAAAAGCTCAGAATACCCAAGATACAATTCACAGATCATATG  334

seq1  AAGCTCAAG-AAGAAGG-AAGACCAACTGCTTTTTAGAAGGGTGAACAAA  392
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  AAGCTCAAGAAAGAAGGAAAGACCAACTGCTTTTTAGAAGGGTGAACAAA  384

seq1  ATACTTACAGAAGAAAATATGGAGACAAAATGTGGAGCAGAGACTCAAGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACAGAAGAAAATATGGAGACAAAATGTGGAGCAGAGACTCAAGG  434

seq1  AAAGGCCATTCAGAGACTGACCCACCTGGGGATCCATCCCATATACTGTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCATTCAGAGACTGACCCACCTGGGGATCCATCCCATATACTGTC  484

seq1  AACAAACCAAGACACTATTGTGGATGCCAACAAGTGCTTGCTGACAGGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCAAGACACTATTGTGGATGCCAACAAGTGCTTGCTGACAGGAA  534

seq1  CCTGATATGGCTGTCTCCTGAGAGAG  568
      ||||||||||||||||||||||||||
seq2  CCTGATATGGCTGTCTCCTGAGAGAG  560