BAC Information

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BAC

Clone NameB6Ng01-019H15
ChromosomeX (Build37)
Map Location 96,689,652 - 96,837,318
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042324, Ophn1, Yipf6, LOC100042932, Stard8, LOC436219, Efnb1, Pja1
Downstream geneLOC100042947, Pcna-ps1, EG620592, Eda, Dgat2l4, Otud6a, Igbp1, LOC668257, Dgat2l3, LOC620734, P2ry4, Arr3, Pdzd11, Kif4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019H15.bB6Ng01-019H15.g
ACCDH852550DH852551
length1,152974
definitionDH852550|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H15, 5' end.DH852551|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,689,652 - 96,690,821)(96,836,337 - 96,837,318)
sequence
gaattcctagagtgtcctaaggatgtcctaacacttcatggtcatgaggt
cagttaccctctttatcctgccgtccccctttctagagacaaggagctgg
ggagactaatcacagccttgcacggcccagtgcggaagctgggatcagta
gggtcttcttatgatgcctagtgaaatttttttacgttaatttagtgaga
ggcacttggtgctagtaagcagagacacagttggagtgcaaaatccccac
tgtagtccccagagagggaagctctggtaggtaagggagacagacctctt
actagcgagtcttagtttgggatatgattggaaatggcctcattcttggg
atctcacccatgaggccatgtcactgtattgaacaggtgaaggtggccca
gcacaagcctccatttgttgctgccgggggcttctcatggcatgactttt
cccccatgctagaaaactcaacctgagtgagtggtcctgagttcagggag
caaagactctagacataggaaacctgtttagaggagacctggatacctta
gacctaggattcctggctattgagcttctagatttttgtctcctaggtca
tggggctaaggacagatggggcatgtctggctctgaacatacactttgta
catccttctggttttatctagcccaagtctagctagctcacctctggatc
ttacttcccctgttcctgttaccaggattcagaagccattgccagagcat
ttggacagccccttttgagctcagtgggacagagattagtgtctttatat
acattactatacccaagccacaccctcccaatgaaggtccatgaagcagc
agtactaggacacttccatccccctttgtcttgttgcatgtagtggacag
aggtctagagagggaaagggatgccttctgttcatacagcatgacaacgg
cagaattctcccgaacacagggacctatcggtagtgatattgattggtga
gaaagccgaaggaaagctacagaggaacctgggatgagcatgggccggaa
gcagaatggcctaatggagctctcactgatctttgccctctatctggtgc
tcccttgctgaggattatacaagcttctcccctgcagcctccccatctgt
gc
gaattcttcccaccttagagacaaataggaataggaatctaaaatttctg
tgaagaaaaacagaggtggggtgtggactaatgggtaaaagtgagacaga
agcaactttaaccaagttcgtcacagaagacctgttggagaatgtgaccc
ttgagtagagactgaaattaagcaagagaataatgtgtaaaggcctgggg
tcaaatggattgagcagaagagagagtaaggtcaagtctccagaagaggg
aaggatcttgatgtcttcagagaacagcaaagggtcagtgtgaccagaga
aggggcagggacaggtaaagagatcacagacagcgtttctcagtcacagt
taaaatgtgaggtttggtgtgatgagaacccaaagaagcattttgtgcct
cttcccttgtgttttggagaactgagtgaaggatgcatgggtagagacat
agacacccacaaggaggcacatagtctttgtgatagacaccatagtgact
tggaccagaatggtaagtgtagctggctgttgtgtgaagtcagtgtggag
atgtagttgagagttggaatctgagattctttgacaggggactaagaaaa
agacaagaagatgtcagtcgttggcagtttggataaataatgtgccaagt
attaaatagtgggagactttgaaggacaggacagattggaggctagtatg
cacatttgggtctcaggctgagtggctcaagttgtctagatgtgccctca
gtctttgcacagtgctgggctcattctaagaataaggtacttggggaaaa
cactgaaaattctcttgactacattctaaagatccaaagacacctttgtc
ctgactgtttgggggctgacttgttctgatatgtgtccaaaccagatggc
ctcttgaagtccctcctggtttgaggatctcttctgtgatcatgaccaaa
gggggaacaggattttctctttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_96689652_96690821
seq2: B6Ng01-019H15.b_46_1197

seq1  GAATTCCTAGAGTGTCCTAAGGATGTCCTAACACTTCATGGTCATGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAGTGTCCTAAGGATGTCCTAACACTTCATGGTCATGAGGT  50

seq1  CAGTTACCCTCTTTATCCTGCCGTCCCCCTTTCTAGAGACAAGGAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCCTCTTTATCCTGCCGTCCCCCTTTCTAGAGACAAGGAGCTGG  100

seq1  GGAGACTAATCACAGCCTTGCACGGCCCAGTGCGGAAGCTGGGATCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTAATCACAGCCTTGCACGGCCCAGTGCGGAAGCTGGGATCAGTA  150

seq1  GGGTCTTCTTATGATGCCTAGTGAAATTTTTTTACGTTAATTTAGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTCTTATGATGCCTAGTGAAATTTTTTTACGTTAATTTAGTGAGA  200

seq1  GGCACTTGGTGCTAGTAAGCAGAGACACAGTTGGAGTGCAAAATCCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGGTGCTAGTAAGCAGAGACACAGTTGGAGTGCAAAATCCCCAC  250

seq1  TGTAGTCCCCAGAGAGGGAAGCTCTGGTAGGTAAGGGAGACAGACCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCCCAGAGAGGGAAGCTCTGGTAGGTAAGGGAGACAGACCTCTT  300

seq1  ACTAGCGAGTCTTAGTTTGGGATATGATTGGAAATGGCCTCATTCTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCGAGTCTTAGTTTGGGATATGATTGGAAATGGCCTCATTCTTGGG  350

seq1  ATCTCACCCATGAGGCCATGTCACTGTATTGAACAGGTGAAGGTGGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCCATGAGGCCATGTCACTGTATTGAACAGGTGAAGGTGGCCCA  400

seq1  GCACAAGCCTCCATTTGTTGCTGCCGGGGGCTTCTCATGGCATGACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGCCTCCATTTGTTGCTGCCGGGGGCTTCTCATGGCATGACTTTT  450

seq1  CCCCCATGCTAGAAAACTCAACCTGAGTGAGTGGTCCTGAGTTCAGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGCTAGAAAACTCAACCTGAGTGAGTGGTCCTGAGTTCAGGGAG  500

seq1  CAAAGACTCTAGACATAGGAAACCTGTTTAGAGGAGACCTGGATACCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTCTAGACATAGGAAACCTGTTTAGAGGAGACCTGGATACCTTA  550

seq1  GACCTAGGATTCCTGGCTATTGAGCTTCTAGATTTTTGTCTCCTAGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGGATTCCTGGCTATTGAGCTTCTAGATTTTTGTCTCCTAGGTCA  600

seq1  TGGGGCTAAGGACAGATGGGGCATGTCTGGCTCTGAACATACACTTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTAAGGACAGATGGGGCATGTCTGGCTCTGAACATACACTTTGTA  650

seq1  CATCCTTCTGGTTTTATCTAGCCCAAGTCTAGCTAGCTCACCTCTGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCTGGTTTTATCTAGCCCAAGTCTAGCTAGCTCACCTCTGGATC  700

seq1  TTACTTCCCCTGTTCCTGTTACCAGGATTCAGAAGCCATTGCCAGAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCCCTGTTCCTGTTACCAGGATTCAGAAGCCATTGCCAGAGCAT  750

seq1  TTGGACAGCCCC-TTTGAGCTCAGTGGGACAGAGATTAGTGTCTTTATAT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGCCCCTTTTGAGCTCAGTGGGACAGAGATTAGTGTCTTTATAT  800

seq1  ACATTACTATACCCAAGCCACACCCTCCCAATGAAGGTCCATGAAGCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTATACCCAAGCCACACCCTCCCAATGAAGGTCCATGAAGCAGC  850

seq1  AGTACTAGGACACTTCCATCCCCCTTTGTCTTGTTGCATGTAGTTGGACA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTACTAGGACACTTCCATCCCCCTTTGTCTTGTTGCATGTAG-TGGACA  899

seq1  GAGGTCTAGAGAGGGAAAGGGATGCCTTCATGTTCATACAGCAGGACAAC  949
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  GAGGTCTAGAGAGGGAAAGGGATGCCTTC-TGTTCATACAGCATGACAAC  948

seq1  GGCAGAATCCTCCCGAACACAGGGACCTATCGGTAGTGATAGTGATTGGT  999
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  GGCAGAATTCTCCCGAACACAGGGACCTATCGGTAGTGATATTGATTGGT  998

seq1  GAGAAAAGCCGAAGGGAAAGCTACAAGAGGAACATGGGATGAGCAGTGGC  1049
      ||| ||||||||| |||||||||| |||||||| |||||||||||  |||
seq2  GAG-AAAGCCGAA-GGAAAGCTAC-AGAGGAACCTGGGATGAGCATGGGC  1045

seq1  CGGAAAGTCAGGATGGGCTGAAAGGTAGCTCACACTGGAGTCATTAGCCC  1099
      |||||   ||| |||| ||  || | ||||| |||||   || || ||||
seq2  CGGAA--GCAGAATGGCCT--AATGGAGCTCTCACTG--ATC-TTTGCCC  1088

seq1  AGCTATCCTGTTGCTTCCATTGCTGAGGATTAGCACAAGCATCCTTCCCC  1149
        |||| ||| ||| ||| |||||||||||||  |||||| ||    |||
seq2  -TCTAT-CTGGTGC-TCCCTTGCTGAGGATTA-TACAAGCTTC---TCCC  1131

seq1  CTGCAGCCCTCCCTACTGTGC  1170
      ||||||||  |||  ||||||
seq2  CTGCAGCCTCCCCATCTGTGC  1152

seq1: chrX_96836337_96837318
seq2: B6Ng01-019H15.g_66_1039 (reverse)

seq1  TAAAAGAGAAAATTCCTGCTCCCACCTCTGGGTCATAGATCACAGAAGAG  50
      |||||||||||| ||||| |||| ||| | |||||| |||||||||||||
seq2  TAAAAGAGAAAA-TCCTGTTCCC-CCT-TTGGTCAT-GATCACAGAAGAG  46

seq1  AATCCTCAAACCAGGAGGGACTTCAAGGGGCCATCTGGTTTGGACACATA  100
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -ATCCTCAAACCAGGAGGGACTTCAAGAGGCCATCTGGTTTGGACACATA  95

seq1  TCAGAACAGGTCAGGCCCCAAACAGTCAGGACAATGGTTGTCTTTGGATC  150
      |||||||| ||||| ||||||||||||||||||| || ||||||||||||
seq2  TCAGAACAAGTCAGCCCCCAAACAGTCAGGACAAAGG-TGTCTTTGGATC  144

seq1  TTTTAAGAATGTAGTCAAGAGAATTTTCAGTGTTTTCCCCAAGTACCTTA  200
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTT--AGAATGTAGTCAAGAGAATTTTCAGTGTTTTCCCCAAGTACCTTA  192

seq1  TTCTTAGAATGAGCCCAGCACTGTGCAAAGACTGAGGGCACATCTAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAATGAGCCCAGCACTGTGCAAAGACTGAGGGCACATCTAGACA  242

seq1  ACTTGAGCCACTCAGCCTGAGACCCAAATGTGCATACTAGCCTCCAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGCCACTCAGCCTGAGACCCAAATGTGCATACTAGCCTCCAATCT  292

seq1  GTCCTGTCCTTCAAAGTCTCCCACTATTTAATACTTGGCACATTATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTCCTTCAAAGTCTCCCACTATTTAATACTTGGCACATTATTTAT  342

seq1  CCAAACTGCCAACGACTGACATCTTCTTGTCTTTTTCTTAGTCCCCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGCCAACGACTGACATCTTCTTGTCTTTTTCTTAGTCCCCTGTC  392

seq1  AAAGAATCTCAGATTCCAACTCTCAACTACATCTCCACACTGACTTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCTCAGATTCCAACTCTCAACTACATCTCCACACTGACTTCACA  442

seq1  CAACAGCCAGCTACACTTACCATTCTGGTCCAAGTCACTATGGTGTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCAGCTACACTTACCATTCTGGTCCAAGTCACTATGGTGTCTAT  492

seq1  CACAAAGACTATGTGCCTCCTTGTGGGTGTCTATGTCTCTACCCATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGACTATGTGCCTCCTTGTGGGTGTCTATGTCTCTACCCATGCAT  542

seq1  CCTTCACTCAGTTCTCCAAAACACAAGGGAAGAGGCACAAAATGCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTCAGTTCTCCAAAACACAAGGGAAGAGGCACAAAATGCTTCTT  592

seq1  TGGGTTCTCATCACACCAAACCTCACATTTTAACTGTGACTGAGAAACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTCATCACACCAAACCTCACATTTTAACTGTGACTGAGAAACGC  642

seq1  TGTCTGTGATCTCTTTACCTGTCCCTGCCCCTTCTCTGGTCACACTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGATCTCTTTACCTGTCCCTGCCCCTTCTCTGGTCACACTGACC  692

seq1  CTTTGCTGTTCTCTGAAGACATCAAGATCCTTCCCTCTTCTGGAGACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGTTCTCTGAAGACATCAAGATCCTTCCCTCTTCTGGAGACTTG  742

seq1  ACCTTACTCTCTCTTCTGCTCAATCCATTTGACCCCAGGCCTTTACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACTCTCTCTTCTGCTCAATCCATTTGACCCCAGGCCTTTACACAT  792

seq1  TATTCTCTTGCTTAATTTCAGTCTCTACTCAAGGGTCACATTCTCCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTTGCTTAATTTCAGTCTCTACTCAAGGGTCACATTCTCCAACA  842

seq1  GGTCTTCTGTGACGAACTTGGTTAAAGTTGCTTCTGTCTCACTTTTACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTGTGACGAACTTGGTTAAAGTTGCTTCTGTCTCACTTTTACCC  892

seq1  ATTAGTCCACACCCCACCTCTGTTTTTCTTCACAGAAATTTTAGATTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCCACACCCCACCTCTGTTTTTCTTCACAGAAATTTTAGATTCCT  942

seq1  ATTCCTATTTGTCTCTAAGGTGGGAAGAATTC  982
      ||||||||||||||||||||||||||||||||
seq2  ATTCCTATTTGTCTCTAAGGTGGGAAGAATTC  974