BAC Information

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BAC

Clone NameB6Ng01-019K20
ChromosomeX (Build37)
Map Location 48,132,358 - 48,277,690
singlet/doubletdoublet
Overlap gene2610018G03Rik
Upstream geneIgsf1, Olfr1322, LOC100040344, Olfr1323, EG665816, Olfr1324, LOC100041788, 6720401G13Rik
Downstream geneLOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356, Hs6st2, Usp26, LOC100040479, LOC665888
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019K20.bB6Ng01-019K20.g
ACCDH852700DH852701
length1,031810
definitionDH852700|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K20, 5' end.DH852701|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,132,358 - 48,133,201)(48,276,879 - 48,277,690)
sequence
gaattccagagctagtctcccccaagtacacagacacaaaaattttcaat
aaaatactttaaaatctgagtttaagaacatagcaggaagatcagtcatt
atgatcaaattgacttcgttcaagtaatgcagcaatggctcattatattt
aatcattaaatgtaatgtatcacataaatggactcaaggacagaaatttc
atcattatctcaaaaatgcagaaaccttggtcaaaatccaacatcccttc
atgattaaaaaagtactccacatactagaaaatagtggcagtatatctca
aggtaataaaagctgtgtgtgtgacagacctgttcctaatatgatactac
agcactctatacaagatgagtttattttggcttatggttttatagcagag
tttatcaacctgtgggttataatcccttttgggggtttcaaatatccctt
ttgcaactgtcccatatcagatattttgcatatcagatgtttacattatg
attcaaatcagtactaaaattatagttatgaagtagcaacaaaaataatt
ttatggttgagagtcatcacaacctaagaaactgcattaaagtgtcacag
tattaggaacgttgagaatcactgatctagagagttaggtctataacact
atggcagaggcatcagggaggcttggtggctgaagcaggtgagctgtgaa
ttcacatcctaagctgcaagcatgcaggagagcggggtggaatatactgt
gaaaagcatgagggaggcagaagcaggaggaggctttcagtaagtagaag
ctaatgtgatctaaatagaaagagtcagcccatgcggggctctatagtga
gatcctatctcaacaaagaaacaaacaaacaaacacaagaaaacacacaa
ctggattgaagaatgggctaaggaactgaacagagggttttcaaatgagg
aaatacaaatggctaccgaaaactttcaagaccatccttggtcatcatgt
aaacacaataaaactactttgggattccatt
gaattcatcgtttggggcactgtgctctcctttctgccttgcatttcttt
tttcttctttttatttatttttattgggtatttatttcatttacatttcc
aatgctatcccaaaaatcccccacccactcccccacccactcccccaccc
acccactctcacttcttggccctgtcgttcccctgtactgaggcatataa
agtttgcacgaccaatgggcctctctttccactgatggccgactaggcca
ccttctgatacatatgtagctagagacacgggctccggggcgggggggcg
ggggggtactggttagttcataatgttgctccacttatagggttgcagat
ccctttagctccttgggtactttctctagctcctccattgggggccctgt
gatccatccaatagctgacggtgagcatccacttctgtgtttgctaggcc
ctggcctagtctcacaagagacagctatatcagggtccttctttgctttt
ttttttttttaagccagctcttgctctgtgcctgattaggcataccctct
gccaggagtcccttgtgctatctatctctccatttttgtgcaggtaggtg
cactttggatgagatcttatattgacccagcttacactcccaccccaagg
cacatggcccttcacactgctgtgactaagtagcagcgtgcctatattgc
ctgcagtctgtttcccttcgtggcaatgcctatgtgttgcccccatcagt
ctcactgcagagaggcaagtgccttgcagagagcctggtctcacccttgt
ggacagaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_48132358_48133201
seq2: B6Ng01-019K20.b_48_890

seq1  GAATTCCAGAGCTAGTCTCCCCCAAGTACACAGACACAAAAATTTTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCTAGTCTCCCCCAAGTACACAGACACAAAAATTTTCAAT  50

seq1  AAAATACTTTAAAATCTGAGTTTAAGAACATAGCAGGAAGATCAGTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTTAAAATCTGAGTTTAAGAACATAGCAGGAAGATCAGTCATT  100

seq1  ATGATCAAATTGACTTCGTTCAAGTAATGCAGCAATGGCTCATTATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAAATTGACTTCGTTCAAGTAATGCAGCAATGGCTCATTATATTT  150

seq1  AATCATTAAATGTAATGTATCACATAAATGGACTCAAGGACAGAAATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAAATGTAATGTATCACATAAATGGACTCAAGGACAGAAATTTC  200

seq1  ATCATTATCTCAAAAATGCAGAAACCTTGGTCAAAATCCAACATCCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATCTCAAAAATGCAGAAACCTTGGTCAAAATCCAACATCCCTTC  250

seq1  ATGATTAAAAAAGTACTCCACATACTAGAAAATAGTGGCAGTATATCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAAAAAAGTACTCCACATACTAGAAAATAGTGGCAGTATATCTCA  300

seq1  AGGTAATAAAAGCTGTGTGTGTGACAGACCTGTTCCTAATATGATACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATAAAAGCTGTGTGTGTGACAGACCTGTTCCTAATATGATACTAC  350

seq1  AGCACTCTATACAAGATGAGTTTATTTTGGCTTATGGTTTTATAGCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTATACAAGATGAGTTTATTTTGGCTTATGGTTTTATAGCAGAG  400

seq1  TTTATCAACCTGTGGGTTATAATCCCTTTTGGGGGTTTCAAATATCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAACCTGTGGGTTATAATCCCTTTTGGGGGTTTCAAATATCCCTT  450

seq1  TTGCAACTGTCCCATATCAGATATTTTGCATATCAGATGTTTACATTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACTGTCCCATATCAGATATTTTGCATATCAGATGTTTACATTATG  500

seq1  ATTCAAATCAGTACTAAAATTATAGTTATGAAGTAGCAACAAAAATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATCAGTACTAAAATTATAGTTATGAAGTAGCAACAAAAATAATT  550

seq1  TTATGGTTGAGAGTCATCACAACCTAAGAAACTGCATTAAAGTGTCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTGAGAGTCATCACAACCTAAGAAACTGCATTAAAGTGTCACAG  600

seq1  TATTAGGAACGTTGAGAATCACTGATCTAGAGAGTTAGGTCTATAACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGAACGTTGAGAATCACTGATCTAGAGAGTTAGGTCTATAACACT  650

seq1  ATGGCAGAGGCATCAGGGAGGCTTGGTGGCTGAAGCAGGTGAGCTGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAGGCATCAGGGAGGCTTGGTGGCTGAAGCAGGTGAGCTGTGAA  700

seq1  TTCACATCCTAAGCTGCAAGCATGCAGGAGAGCGGGGTGGAATATACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCCTAAGCTGCAAGCATGCAGGAGAGCGGGGTGGAATATACTGT  750

seq1  GAAAAGCATGAGGGAGGCAGAAGCAGGAGGAGGCTTTCAGTAAGGTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAAAGCATGAGGGAGGCAGAAGCAGGAGGAGGCTTTCAGTAA-GTAGAA  799

seq1  GCTAATGTGATCTAAATAGAAAGAGTCAGCCCATGCGGGGCTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGTGATCTAAATAGAAAGAGTCAGCCCATGCGGGGCTCT  843

seq1: chrX_48276879_48277690
seq2: B6Ng01-019K20.g_68_877 (reverse)

seq1  ACTTCTGTCCACAAGGTTGAGACCAGGCTCTCTGCAAGGCACTTGCCTAC  50
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  ACTTCTGTCCACAAGGGTGAGACCAGGCTCTCTGCAAGGCACTTGCCT-C  49

seq1  TCTGCAGTGAGACTGATGGGGGCAACACATAGGCATTGCCACGAAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTGAGACTGATGGGGGCAACACATAGGCATTGCCACGAAGGGAA  99

seq1  ACAGACTTGCAGGCAATATAGGCACGCTGCTACTTAGTCACAGCAGTGTG  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAC-TGCAGGCAATATAGGCACGCTGCTACTTAGTCACAGCAGTGTG  148

seq1  AAGGGCCATGTGCCTTGGGGTGGGAGTGTAAGCTGGGTCAATATAAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCATGTGCCTTGGGGTGGGAGTGTAAGCTGGGTCAATATAAGATC  198

seq1  TCATCCAAAGTGCACCTACCTGCACAAAAATGGAGAGATAGATAGCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAAAGTGCACCTACCTGCACAAAAATGGAGAGATAGATAGCACAA  248

seq1  GGGACTCCTGGCAGAGGGTATGCCTAATCAGGCACAGAGCAAGAGCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCCTGGCAGAGGGTATGCCTAATCAGGCACAGAGCAAGAGCTGGC  298

seq1  TTAAAAAAAAAAAAAAGCAAAGAAGGACCCTGATATAGCTGTCTCTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAAGCAAAGAAGGACCCTGATATAGCTGTCTCTTGTG  348

seq1  AGACTAGGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCACCGTCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCACCGTCAGCT  398

seq1  ATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAA  448

seq1  GGAGCTAAAGGGATCTGCAACCCTATAAGTGGAGCAACATTATGAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAAAGGGATCTGCAACCCTATAAGTGGAGCAACATTATGAACTAA  498

seq1  CCAGTACCCCCCCGCCCCCCCGCCCCGGAGCCCGTGTCTCTAGCTACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACCCCCCCGCCCCCCCGCCCCGGAGCCCGTGTCTCTAGCTACATA  548

seq1  TGTATCAGAAGGTGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGAAGGTGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCATTG  598

seq1  GTCGTGCAAACTTTATATGCCTCAGTACAGGGGAACGACAGGGCCAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGCAAACTTTATATGCCTCAGTACAGGGGAACGACAGGGCCAAGAA  648

seq1  GTGAGAGTGGGTGGGTGGGGGAGTGGGTGGGGGAGTGGGTGGGGGATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGTGGGTGGGTGGGGGAGTGGGTGGGGGAGTGGGTGGGGGATTTT  698

seq1  TGGGATAGCATTGGAAATGTAAATGAAATAAATACCCAATAAAAATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGCATTGGAAATGTAAATGAAATAAATACCCAATAAAAATAAAT  748

seq1  AAAAAGAAGAAAAAAGAAATGCAAGGCAGAAAGGAGAGCACAGTGCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGAAAAAAGAAATGCAAGGCAGAAAGGAGAGCACAGTGCCCCA  798

seq1  AACGATGAATTC  812
      ||||||||||||
seq2  AACGATGAATTC  810