BAC Information

Click to search

BAC

Clone NameB6Ng01-019N23
ChromosomeX (Build37)
Map Location 20,008,366 - 20,121,403
singlet/doubletdoublet
Overlap genePhf16
Upstream geneBC049702, LOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283
Downstream geneRgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268, EG629024, EG331392, Agtr2, EG668997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019N23.bB6Ng01-019N23.g
ACCDH852832DH852833
length1,081975
definitionDH852832|Mus musculus domesticus DNA, BAC clone: B6Ng01-019N23, 5' end.DH852833|Mus musculus domesticus DNA, BAC clone: B6Ng01-019N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,120,311 - 20,121,403)(20,008,366 - 20,009,338)
sequence
gaattcctggggctcaatggtcagccagtccagcctgcctagtggagtat
gaagtaatgagagagagagagatctggtcttaaagaagacacatccccag
gaaaaggtcaataatgtcaggctctggatgagcagagaggacagaccgcc
tttgtgcatttgatctgaccaggtggccttcatgagtctgtagcctcagt
ctagggctgatcagtgtggcttgaaggctattgctgcaacctccatggaa
gctgtcatggcccctgtgcctgggcccagggatatggtcctccccctact
ttggtgttacctgccatttggtgttattcccaggggagagaagagaagtc
tccctttaacggccttctgatggttttggcactgctttaattcattcgga
tctccatccactttttccctcctagatttctgtcatcctcttggggactc
catctcaactctctgcatctgctgccaaaaagactcattagacagggaat
cctacaggtctgggagtggtgtttgtcacctttattttctgtaacataga
ggtggttaaactattttatgtttttaagggaggcataactttcttatttt
ggtcttttgtttcctttcgttttgttttgtttttagagacagggtttctc
tgtgtagccttggctgtcctggaactcactctgtataccaggctggcctc
gaactcagagattcgcttgcctctgcttctcaagtggtgggattaaaggt
gttcaacaacattacctgtcatattttggctttttttttttttgaggcag
tgttttattatgtagtcctggaactcactatctagaacaggctggttctt
aaaactcagagatccgattgtttatgcctcctgagtgttaggatgaaaac
tgtataccaccacatgtagctgggataactttacttagaaaaaatccccc
tcatgtcctagtttcttttctgtgctatgagaggggacgaagtttattga
cttacagtttcggctaacagttcattaattgagagaaggttcagcagact
cagcgcttctcacagccacccattcagaaga
gaattctttgatgtcatgcatccaccacagacaatggaatcaggcaaact
tggactcaaattttggctcttgcatttgatattggctagtttacttctct
atgcctcagtttcttcatatgccaaagcatatttctaggatggtaatgag
catttagttgaagtaatagttgctctataaatattcatttcatctcctct
tacaaaaaatacaatatgttgtgagtaacataaaaaatattagatattaa
ggtaggatccaagcgggaatttcttgtttgtttttttttcaaaaaaagat
aaattagataaatacctaattattagttgtattaggaaagatgacggcag
ttaccttatgggataataaatacaatagaagtagtgatttggtaaccatt
ttctcttaagttgagtactgaacagctagctctctgagcagtagatatct
cttagaggtgtgaatcttgaaatggtgaaacagagccaacttgctcaagg
tcacacacgcatacatacacacagtaaggaagagagagaattcattcctc
tgtgactgaccagtggagtgctcttggaacctcaagaatgaataataata
ataaactaggtaaagtgaagagagaagagattggcaggtggagggaatag
gaggtaggacagcactgaggtgggatggaggaataaaggatttacagagc
tttggctggatctgtgaagagagacaaggtaggcagaacattggtagact
ttgtggaaccttcattaagaagcttatgctttattttaaaggataaataa
gcataggccttccttgaaagtattttattaaaatttttcctaactgcatg
tgtgagtacttcagaaaagtattcagtggtttctaaaaaagctttatgta
atttcttcactgttcatttgcatcccatataggcaatgtttctgttaaaa
cctatgttaaatgctatgtaggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_20120311_20121403
seq2: B6Ng01-019N23.b_44_1124 (reverse)

seq1  TCTTCTCTTGACAATGGGTTGCCTGTGAGAAGCTGCCTGAGTTCCTGCCT  50
      ||||||      |||||| || |||||||||||   ||||||  ||||  
seq2  TCTTCT-----GAATGGG-TGGCTGTGAGAAGC--GCTGAGT--CTGC--  38

seq1  TGACCTTCCTCTCAA-TAATGAACTGTAGTCTGAAACTGTAAGTCAAATA  99
      ||| | | ||||||| |||||||||||   | ||||||||||||| ||||
seq2  TGAACCTTCTCTCAATTAATGAACTGTTAGCCGAAACTGTAAGTC-AATA  87

seq1  AACTTCGTCCCCTCTCATAGCACCAGAAAAGAAACTAGGACATGAGGGGA  149
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  AACTTCGTCCCCTCTCATAGCA-CAGAAAAGAAACTAGGACATGAGGGGG  136

seq1  TTTTTTTCTAAGTAAAGTTATCCCAGCTACATGTGGTGGTATACAGTTTT  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTAAGTAAAGTTATCCCAGCTACATGTGGTGGTATACAGTTTT  186

seq1  CATCCTAACACTCAGGAGGCATAAACAATCGGATCTCTGAGTTTTAAG-A  248
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATCCTAACACTCAGGAGGCATAAACAATCGGATCTCTGAGTTTTAAGAA  236

seq1  CCAGCCTGTTCTAGATAGTGAGTTCCAGGACTACATAATAAAACACTGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGTTCTAGATAGTGAGTTCCAGGACTACATAATAAAACACTGCC  286

seq1  TCAAAAAAAAAAAAAGCCAAAATATGACAGGTAATGTTGTTGAACACCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAAAAAAAGCCAAAATATGACAGGTAATGTTGTTGAACACCTT  336

seq1  TAATCCCACCACTTGAGAAGCAGAGGCAAGCGAATCTCTGAGTTCGAGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCACCACTTGAGAAGCAGAGGCAAGCGAATCTCTGAGTTCGAGGC  386

seq1  CAGCCTGGTATACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTATACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAA  436

seq1  ACCCTGTCTCTAAAAACAAAACAAAACGAAAGGAAACAAAAGACCAAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCTAAAAACAAAACAAAACGAAAGGAAACAAAAGACCAAAAT  486

seq1  AAGAAAGTTATGCCTCCCTTAAAAACATAAAATAGTTTAACCACCTCTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTTATGCCTCCCTTAAAAACATAAAATAGTTTAACCACCTCTAT  536

seq1  GTTACAGAAAATAAAGGTGACAAACACCACTCCCAGACCTGTAGGATTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGAAAATAAAGGTGACAAACACCACTCCCAGACCTGTAGGATTCC  586

seq1  CTGTCTAATGAGTCTTTTTGGCAGCAGATGCAGAGAGTTGAGATGGAGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAATGAGTCTTTTTGGCAGCAGATGCAGAGAGTTGAGATGGAGTC  636

seq1  CCCAAGAGGATGACAGAAATCTAGGAGGGAAAAAGTGGATGGAGATCCGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGGATGACAGAAATCTAGGAGGGAAAAAGTGGATGGAGATCCGA  686

seq1  ATGAATTAAAGCAGTGCCAAAACCATCAGAAGGCCGTTAAAGGGAGACTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAAAGCAGTGCCAAAACCATCAGAAGGCCGTTAAAGGGAGACTT  736

seq1  CTCTTCTCTCCCCTGGGAATAACACCAAATGGCAGGTAACACCAAAGTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTCCCCTGGGAATAACACCAAATGGCAGGTAACACCAAAGTAG  786

seq1  GGGGAGGACCATATCCCTGGGCCCAGGCACAGGGGCCATGACAGCTTCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGACCATATCCCTGGGCCCAGGCACAGGGGCCATGACAGCTTCCA  836

seq1  TGGAGGTTGCAGCAATAGCCTTCAAGCCACACTGATCAGCCCTAGACTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTTGCAGCAATAGCCTTCAAGCCACACTGATCAGCCCTAGACTGA  886

seq1  GGCTACAGACTCATGAAGGCCACCTGGTCAGATCAAATGCACAAAGGCGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGACTCATGAAGGCCACCTGGTCAGATCAAATGCACAAAGGCGG  936

seq1  TCTGTCCTCTCTGCTCATCCAGAGCCTGACATTATTGACCTTTTCCTGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCTCTGCTCATCCAGAGCCTGACATTATTGACCTTTTCCTGGG  986

seq1  GATGTGTCTTCTTTAAGACCAGATCTCTCTCTCTCTCATTACTTCATACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCTTCTTTAAGACCAGATCTCTCTCTCTCTCATTACTTCATACT  1036

seq1  CCACTAGGCAGGCTGGACTGGCTGACCATTGAGCCCCAGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGGCAGGCTGGACTGGCTGACCATTGAGCCCCAGGAATTC  1081

seq1: chrX_20008366_20009338
seq2: B6Ng01-019N23.g_69_1043

seq1  GAATTCTTTGATGTCATGCATCCACCACAGACAATGGAATCAGGCAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATGTCATGCATCCACCACAGACAATGGAATCAGGCAAACT  50

seq1  TGGACTCAAATTTTGGCTCTTGCATTTGATATTGGCTAGTTTACTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCAAATTTTGGCTCTTGCATTTGATATTGGCTAGTTTACTTCTCT  100

seq1  ATGCCTCAGTTTCTTCATATGCCAAAGCATATTTCTAGGATGGTAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCAGTTTCTTCATATGCCAAAGCATATTTCTAGGATGGTAATGAG  150

seq1  CATTTAGTTGAAGTAATAGTTGCTCTATAAATATTCATTTCATCTCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTTGAAGTAATAGTTGCTCTATAAATATTCATTTCATCTCCTCT  200

seq1  TACAAAAAATACAATATGTTGTGAGTAACATAAAAAATATTAGATATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAATACAATATGTTGTGAGTAACATAAAAAATATTAGATATTAA  250

seq1  GGTAGGATCCAAGCGGGAATTTCTTGTTTGTTTTTTTTTCAAAAAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGATCCAAGCGGGAATTTCTTGTTTGTTTTTTTTTCAAAAAAAGAT  300

seq1  AAATTAGATAAATACCTAATTATTAGTTGTATTAGGAAAGATGACGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGATAAATACCTAATTATTAGTTGTATTAGGAAAGATGACGGCAG  350

seq1  TTACCTTATGGGATAATAAATACAATAGAAGTAGTGATTTGGTAACCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTATGGGATAATAAATACAATAGAAGTAGTGATTTGGTAACCATT  400

seq1  TTCTCTTAAGTTGAGTACTGAACAGCTAGCTCTCTGAGCAGTAGATATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAAGTTGAGTACTGAACAGCTAGCTCTCTGAGCAGTAGATATCT  450

seq1  CTTAGAGGTGTGAATCTTGAAATGGTGAAACAGAGCCAACTTGCTCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGTGTGAATCTTGAAATGGTGAAACAGAGCCAACTTGCTCAAGG  500

seq1  TCACACACGCATACATACACACAGTAAGGAAGAGAGAGAATTCATTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACGCATACATACACACAGTAAGGAAGAGAGAGAATTCATTCCTC  550

seq1  TGTGACTGACCAGTGGAGTGCTCTTGGAACCTCAAGAATGAATAATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGACCAGTGGAGTGCTCTTGGAACCTCAAGAATGAATAATAATA  600

seq1  ATAAACTAGGTAAAGTGAAGAGAGAAGAGATTGGCAGGTGGAGGGAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAGGTAAAGTGAAGAGAGAAGAGATTGGCAGGTGGAGGGAATAG  650

seq1  GAGGTAGGACAGCACTGAGGTGGGATGGAGGAATAAAGGATTTACAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGACAGCACTGAGGTGGGATGGAGGAATAAAGGATTTACAGAGC  700

seq1  TTTGGCTGGATCTGTGAAGAGAGACAAGGTAGGCAGAACATTGGTAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTGGATCTGTGAAGAGAGACAAGGTAGGCAGAACATTGGTAGACT  750

seq1  TTGTGGAACC-TCATTAAGAAGCTTATGCTTTATTTTAAA-GATAAATAA  798
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  TTGTGGAACCTTCATTAAGAAGCTTATGCTTTATTTTAAAGGATAAATAA  800

seq1  GCATAGGCC-TCCTTGAAAGTATTTTATTAAAATTTTTCCTAACTGCATG  847
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGCCTTCCTTGAAAGTATTTTATTAAAATTTTTCCTAACTGCATG  850

seq1  TGTGAGTACTTCAGAAAAGTATTCAGTGGTTTCTAAAAAAAGCTTTATGT  897
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTGAGTACTTCAGAAAAGTATTCAGTGGTTTCT-AAAAAAGCTTTATGT  899

seq1  AATTTCTTCACTGTTCATATTGCATTCCAATATAGGCAATGTTTCTGTAT  947
      |||||||||||||||||| ||||| ||| ||||||||||||||||||| |
seq2  AATTTCTTCACTGTTCAT-TTGCA-TCCCATATAGGCAATGTTTCTGT-T  946

seq1  AAAACCTATGTTAAATGC---ATAGGTAG  973
      ||||||||||||||||||    |||||||
seq2  AAAACCTATGTTAAATGCTATGTAGGTAG  975