BAC Information

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BAC

Clone NameB6Ng01-021I12
ChromosomeX (Build37)
Map Location 71,363,954 - 71,365,036
singlet/doubletsinglet
Overlap genenone
Upstream geneMGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2
Downstream geneOpn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021I12.bB6Ng01-021I12.g
ACCDH854010DH854011
length1,1961,063
definitionDH854010|Mus musculus domesticus DNA, BAC clone: B6Ng01-021I12, 5' end.DH854011|Mus musculus domesticus DNA, BAC clone: B6Ng01-021I12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgattgtgggaccactgtcagacttctctggctgtgaaatga
gttccttgatcagaagcaatactgtacgggataccatgaggatggataag
gcattctgtcagtccacagatggtggttttgacattaagtgcaagaaagg
caaatccatgaccagaataagagtatctactccaataagaacaaaatgtt
gtcccatccacggaggaagtggtccaatgtagttaatctgccaccaggtt
gctggctggtcacctcaagaaatggtgccatacctggtgctcagtgttgg
tctctgatgttggcagatctggcattcagtagcagctgtagccgggtcag
ctttggtgagtggaagtccgtgttgctgagcccaagcataacccccatct
ctcccaccatagccactttgttcatgtgtccattgagtaaggacaaggat
ggctgtggaaaaagactgactgcccacagaacagggcatactatctactt
gcttgattattgagctcctcttctgctgaagtcaccttttgatgagcatt
tacatgggatacaatatcttcacatgcttccatttggagagatctatcca
catctttctcacatggctttctcaccaattttccaatcatgttctttcca
agttcctgaccattgagtcagtccatcagctcaatccatgaatccactaa
caatcacatatctggacatttctccttccaaacaaaatggatggccatgt
gtactgccccgagttctgcccactgtgaagatttattttcactggggtct
ttcaggttgtccagaaagggattgtaaagctgcagctgtccacttctggg
tgcttgcctgcataatgtgcagaaccatcagtaaaccaagtcctggtgtc
tcaggtgctataatagattgatgttgtgcatgtcctacttatgactgtgg
gtccatgatgggcatttaggtcgatgaaacttggtagtcatttgtccaat
gtcagattccactacgtcatagcatgcccgagcttgtcttcaagggaaag
tgttggtctgcgatgatgaaggccttgcatcatcccaatgttccttcgtg
attcccttggggtcgccaagactcgacattactctggtctgcactgatac
cagacaccataggctgcttggaatctaatcagatgtgagaagttcg
gaattcaacagttggggaacaaacacaaaagccttcagcaagggggtagg
gagcgtgggtctacaacaataacactaacatttgccaggttcagttattc
tcgttttaactagtggataaatataaagccaagagtgtgagtcttgtttt
tgccagactaaatgcaaaatgtattgcactatatttggttatgaacttaa
agctgggttgggccaggtgagtcacttctaactactttgtgcttggtgat
acccatgccttatgatctcttttgaactctcagctgggtgcagttcctgt
actcagagcaatcttcccccctttcatatatgtattgtttacaagctttc
acattataagacaacaaaaataagaaatgagttccacagatcctggtctt
cagtgtaaaaaggagaaaaatgtaaaaaaaaaaaaacaaaaacgaaaaaa
accctggaaattggaaattttaataggaactcacttttttaaatgtgttt
gtaaattgctttactagatgaatatttcctagtaaaacatgtgcgtgatg
agctgcaagcatcttggttgcaccagaactgatggcaagagcacaaaaga
cccgtgggaaggtgtatccactggccaacatgatgacaaattacatatca
aaaataatttatagggattggaagcatgggtcagttgttaagtgcacttg
ttgcttttttagtggaccagggtcagttcccagtacacatatggtagctc
ttaaacatctataattccagtttcagggaacctgatactctcctctgacc
tggttcagtactgcatagtgagtttggggcctctggggctgcatgacacc
cacattcaaaacaaaacagaaaagttatatgacaagaattattcaaacac
agagaatccatgaaaaatataaattcccaaatcaattgtctcttcagaca
ctctcccttcatccccccacctcatccctctgtcccattccatctttccc
atcagtccctcttcatccacccgaatttaatctatctgctttgcgtggaa
atcaagagcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71363954_71365036
seq2: B6Ng01-021I12.g_66_1128 (reverse)

seq1  GGAGGACTCTTGAATCTCACGCAGAAGCAGAAATAGATTAAATATCGGGG  50
      ||||| ||||||| |  |||||| ||||||  ||||||||||| || |||
seq2  GGAGG-CTCTTGATTTCCACGCA-AAGCAG--ATAGATTAAAT-TC-GGG  44

seq1  TGGATGGAAAGAGGGGACTGGATGGGGGAAGGATGGGATGGGAACAGGAG  100
      ||||||  |||| |||||| |||  ||||| ||||| ||||| ||| |||
seq2  TGGATG--AAGA-GGGACT-GAT--GGGAAAGATGGAATGGG-ACA-GAG  86

seq1  GGATGAGGTGGGGGGATGAAGGGAGAGTGTACTGGAAGAGACAAATGGAT  150
      |||||||||||||||||||||||||||||| || |||||||| ||| |||
seq2  GGATGAGGTGGGGGGATGAAGGGAGAGTGT-CT-GAAGAGAC-AATTGAT  133

seq1  TGGGGAATTTATATTTTTCATGGATTCTCTGTGTTTGAATCAATTCTTGT  200
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGGGAATTTATATTTTTCATGGATTCTCTGTGTTTGAAT-AATTCTTGT  182

seq1  CATATAACTTTTCTGTTTTGTTTTGAATGTGGGTGTCATGCAGCCCAAGA  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATATAACTTTTCTGTTTTGTTTTGAATGTGGGTGTCATGCAGCCCCAGA  232

seq1  TGGCCCCAAACTCACTATGCAGTACTGAACCAGGTCAGAGGAGAGTATCA  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGCCCCAAACTCACTATGCAGTACTGAACCAGGTCAGAGGAGAGTATCA  281

seq1  GGTTCCCTGAAACTGGAATTATAGATGTTTAAGAGCTACCATATGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCTGAAACTGGAATTATAGATGTTTAAGAGCTACCATATGTGTAC  331

seq1  TGGGAACTGAACCCTGGTCCACTAAAAAAGCAACAAGTGCACTTAACAAC  400
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTG-ACCCTGGTCCACTAAAAAAGCAACAAGTGCACTTAACAAC  380

seq1  TGACCCATGCTTCCAATCCCTATAAATTATTTTTGATATGTAATTTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCATGCTTCCAATCCCTATAAATTATTTTTGATATGTAATTTGTCA  430

seq1  TCATGTTGGCCAGTGGATACACCTTCCCACGGGTCTTTTGTGCTCTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTGGCCAGTGGATACACCTTCCCACGGGTCTTTTGTGCTCTTGCC  480

seq1  ATCAGTTCTGGTGCAACCAAGATGCTTGCAGCTCATCACGCACATGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTCTGGTGCAACCAAGATGCTTGCAGCTCATCACGCACATGTTTT  530

seq1  ACTAGGAAATATTCATCTAGTAAAGCAATTTACAAACACATTTAAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAAATATTCATCTAGTAAAGCAATTTACAAACACATTTAAAAAAG  580

seq1  TGAGTTCCTATTAAAATTTCCAATTTCCAGGGTTTTTTTCGTTTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCTATTAAAATTTCCAATTTCCAGGGTTTTTTTCGTTTTTGTTT  630

seq1  TTTTTTTTTTACATTTTTCTCCTTTTTACACTGAAGACCAGGATCTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTACATTTTTCTCCTTTTTACACTGAAGACCAGGATCTGTGG  680

seq1  AACTCATTTCTTATTTTTGTTGTCTTATAATGTGAAAGCTTGTAAACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTTCTTATTTTTGTTGTCTTATAATGTGAAAGCTTGTAAACAAT  730

seq1  ACATATATGAAAGGGGGGAAGATTGCTCTGAGTACAGGAACTGCACCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATGAAAGGGGGGAAGATTGCTCTGAGTACAGGAACTGCACCCAG  780

seq1  CTGAGAGTTCAAAAGAGATCATAAGGCATGGGTATCACCAAGCACAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTTCAAAAGAGATCATAAGGCATGGGTATCACCAAGCACAAAGT  830

seq1  AGTTAGAAGTGACTCACCTGGCCCAACCCAGCTTTAAGTTCATAACCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAGTGACTCACCTGGCCCAACCCAGCTTTAAGTTCATAACCAAA  880

seq1  TATAGTGCAATACATTTTGCATTTAGTCTGGCAAAAACAAGACTCACACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGCAATACATTTTGCATTTAGTCTGGCAAAAACAAGACTCACACT  930

seq1  CTTGGCTTTATATTTATCCACTAGTTAAAACGAGAATAACTGAACCTGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTTATATTTATCCACTAGTTAAAACGAGAATAACTGAACCTGGC  980

seq1  AAATGTTAGTGTTATTGTTGTAGACCCACGCTCCCTACCCCCTTGCTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAGTGTTATTGTTGTAGACCCACGCTCCCTACCCCCTTGCTGAA  1030

seq1  GGCTTTTGTGTTTGTTCCCCAACTGTTGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  GGCTTTTGTGTTTGTTCCCCAACTGTTGAATTC  1063