BAC Information

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BAC

Clone NameB6Ng01-021J18
ChromosomeX (Build37)
Map Location 42,937,666 - 43,057,877
singlet/doubletdoublet
Overlap genenone
Upstream geneWdr40b, LOC665585, 1110059M19Rik, LOC100040038, EG385346
Downstream geneLOC100040075, Actrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021J18.bB6Ng01-021J18.g
ACCDH854064DH854065
length1,0081,169
definitionDH854064|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J18, 5' end.DH854065|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,056,865 - 43,057,877)(42,937,666 - 42,938,464)
sequence
gaattcaatcttaaattggtacaactggagatccacaaatgtgacagctg
catgacagaaagatagcaggtgttgttcagtgatgtttgtagaagattaa
ataatacttacctattacttcttgatgtttaaaagcaaaagtgagaataa
ggtcattgttctctctcaatgaagtggaagaatttacaacacaaaaagta
attaacatattggtcagctgtgtagaagaatatgaatttttaatcttcaa
ctgcattatacatcaaaatggtcaattatacttatttagaataggaaatc
cagtacctgagctggagactgatttactagaagttgggtgagaataaaga
tagatgcttttcaaacagtaatgtgatgctattacaggtgaccttgggtc
tctcatgtccttgggtactgcttcacatagtataaattttctcaagattt
caagaatgttgattgtttctccttatttgctcctataggtcatctcctca
gtatttcagtaaatgaacccaggaacatgcttgtcaaaggcaagggatgg
aacaaagttaagtatcaatgtttttgtcaaactggaatgttctaagcagc
ctggagagagctttataatataggaggtgagacaacattttgaagaaaaa
gagagaatattttaggatgagcaattgcagcaaaagcgcagttaagaatt
tcaatgaatctgtgtggaatctggactaagcattaacactaataaccaag
atttgtattagtagcttgatttgtaattattatttgtaatagtagcttga
ttttcatctctgaatttcctgttttcatagcttatgcccttcatagttaa
ggactttaagctatataattatctgtagttttcctagcatcctctaaatt
atttcataacttttattgtcatgttttgcctaggtttgctccttttacct
ttatcctgtttcattgggagttggaccaatcattccaccaacataaatgg
taagaggt
gaattccttaaagaggaaacacaaaaatatgttaaagaattacaggaaaa
cacaaccatacaggtgaaggaattgaacaaagccatactaaatacggaaa
tagaaacaatttttaaaaatcacaaacgaagacaattctggagataggaa
acctagaaaagagatcaagagtcatatatgcaagtatcaccaacagtata
catgagatagaagagagaatctcagatgtagaagataccatagaaaacat
tgccaagacagtcaaagaaaaaaataaaatgcaaaaagatcctaacccaa
aatatctaggaaatccaggacacaatgagaagaccaactctaaggataat
gtacctatagaagagagtgaagatttccaacttaaagtgccagtaaatat
cttccacaaaataacttaagaaaactttcctacctaaagaatgagaagcc
cataaacatacaagaaacctacagcactccacataatagtcaaatacaca
aaacaaaacaaaacaaaagaatattaaaagaagtaaggggaaaaggtcaa
gtaacatataaaggcagacttctcaacagagactatgaaagctagaaggt
cctggacagatgtcatacagactctaagagaacacaaatgccagctcagg
ttactatacccaataaaattctcaattactatagatgaagaaaccaagat
attccatgacaaaaccaaatttacacaaccaaacttacacaatatatctc
cataaatccagtccttcaaaggataatagatggaaaaagccaacacaaca
aaggaagctaaaccatagacaaaacaagaaagtaaccttctttcaacgaa
cccaaagaagatagcaacgcaaatataataatatatatgaaataacttta
ggctactggttacacatttaatcaataatatccattagattgcattatgt
gtagcttcaaaatcatgtttgttctatatttaaagctcatattccatact
tatgacaataaaacatgtgtttgaaatattaaaaactaaatatcttacct
attagcaatattaattgattctatgttaaatcatttagatactactgcag
ttttcatttgaatacattaagacccatattgcatttgatagcaaataaac
ctgtgctagtctttatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_43056865_43057877
seq2: B6Ng01-021J18.b_42_1049 (reverse)

seq1  ACCTCCTACCATCTATGTTGGTGGAAGTGATTGGTCCAACCTCACAAGTG  50
      ||||| |||||| ||||||||||||| |||||||||||| ||| ||| ||
seq2  ACCTCTTACCATTTATGTTGGTGGAA-TGATTGGTCCAA-CTCCCAA-TG  47

seq1  AAACAGGATAAAGTTAAAAAGAGCAAACCTAGGCAAAACATGTACAATAA  100
      ||||||||||||| ||||| |||||||||||||||||||||| |||||||
seq2  AAACAGGATAAAGGTAAAAGGAGCAAACCTAGGCAAAACATG-ACAATAA  96

seq1  AGGTTATGAAATATTTTGAGGGATGCTAGGAAACACTACAGATTAATTAT  150
      | ||||||||||| |||   ||||||||||||| |||||||| |||||||
seq2  AAGTTATGAAATAATTTAGAGGATGCTAGGAAA-ACTACAGA-TAATTAT  144

seq1  ATAGCTTAAAGTCCTTAACTATG-AGGGCATAAGCTATGAAAACAGGAAA  199
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATAGCTTAAAGTCCTTAACTATGAAGGGCATAAGCTATGAAAACAGGAAA  194

seq1  TTCAGAGATGAAAATCAAGCTACTATTACAAATAATAATTACAAATCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGATGAAAATCAAGCTACTATTACAAATAATAATTACAAATCAAG  244

seq1  CTACTAATACAAATCTTGGTTATTAGTGTTAATGCTTAGTCCAGATTCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAATACAAATCTTGGTTATTAGTGTTAATGCTTAGTCCAGATTCCA  294

seq1  CACAGATTCATTGAAATTCTTAACTGCGCTTTTGCTGCAATTGCTCATCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTCATTGAAATTCTTAACTGCGCTTTTGCTGCAATTGCTCATCC  344

seq1  TAAAATATTCTCTCTTTTTCTTCAAAATGTTGTCTCACCTCCTATATTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTCTCTCTTTTTCTTCAAAATGTTGTCTCACCTCCTATATTAT  394

seq1  AAAGCTCTCTCCAGGCTGCTTAGAACATTCCAGTTTGACAAAAACATTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTCTCCAGGCTGCTTAGAACATTCCAGTTTGACAAAAACATTGA  444

seq1  TACTTAACTTTGTTCCATCCCTTGCCTTTGACAAGCATGTTCCTGGGTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAACTTTGTTCCATCCCTTGCCTTTGACAAGCATGTTCCTGGGTTC  494

seq1  ATTTACTGAAATACTGAGGAGATGACCTATAGGAGCAAATAAGGAGAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGAAATACTGAGGAGATGACCTATAGGAGCAAATAAGGAGAAAC  544

seq1  AATCAACATTCTTGAAATCTTGAGAAAATTTATACTATGTGAAGCAGTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACATTCTTGAAATCTTGAGAAAATTTATACTATGTGAAGCAGTAC  594

seq1  CCAAGGACATGAGAGACCCAAGGTCACCTGTAATAGCATCACATTACTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGACATGAGAGACCCAAGGTCACCTGTAATAGCATCACATTACTGT  644

seq1  TTGAAAAGCATCTATCTTTATTCTCACCCAACTTCTAGTAAATCAGTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGCATCTATCTTTATTCTCACCCAACTTCTAGTAAATCAGTCTC  694

seq1  CAGCTCAGGTACTGGATTTCCTATTCTAAATAAGTATAATTGACCATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGTACTGGATTTCCTATTCTAAATAAGTATAATTGACCATTTT  744

seq1  GATGTATAATGCAGTTGAAGATTAAAAATTCATATTCTTCTACACAGCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATAATGCAGTTGAAGATTAAAAATTCATATTCTTCTACACAGCTG  794

seq1  ACCAATATGTTAATTACTTTTTGTGTTGTAAATTCTTCCACTTCATTGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATGTTAATTACTTTTTGTGTTGTAAATTCTTCCACTTCATTGAG  844

seq1  AGAGAACAATGACCTTATTCTCACTTTTGCTTTTAAACATCAAGAAGTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAATGACCTTATTCTCACTTTTGCTTTTAAACATCAAGAAGTAA  894

seq1  TAGGTAAGTATTATTTAATCTTCTACAAACATCACTGAACAACACCTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAGTATTATTTAATCTTCTACAAACATCACTGAACAACACCTGCT  944

seq1  ATCTTTCTGTCATGCAGCTGTCACATTTGTGGATCTCCAGTTGTACCAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGTCATGCAGCTGTCACATTTGTGGATCTCCAGTTGTACCAAT  994

seq1  TTAAGATTGAATTC  1013
      ||||||||||||||
seq2  TTAAGATTGAATTC  1008

seq1: chrX_42937666_42938464
seq2: B6Ng01-021J18.g_470_1237

seq1  TTCCACAAAATAACTTAAGAAAACTTTCCTACCTAAAGAATGAGAAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAAATAACTTAAGAAAACTTTCCTACCTAAAGAATGAGAAGCCC  50

seq1  ATAAACATACAAGAAACCTACAGCACTCCACATAATAGTCAAATACACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATACAAGAAACCTACAGCACTCCACATAATAGTCAAATACACAA  100

seq1  AACAAAACAAAACAAAAGAATATTAAAAGAAGTAAGGGGAAAAGGTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAAAGAATATTAAAAGAAGTAAGGGGAAAAGGTCAAG  150

seq1  TAACATATAAAGGCAGACTTCTCAACAGAGACTATGAAAGCTAGAAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATAAAGGCAGACTTCTCAACAGAGACTATGAAAGCTAGAAGGTC  200

seq1  CTGGACAGATGTCATACAGACTCTAAGAGAACACAAATGCCAGCTCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGATGTCATACAGACTCTAAGAGAACACAAATGCCAGCTCAGGT  250

seq1  TACTATACCCAATAAAATTCTCAATTACTATAGATGAAGAAACCAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATACCCAATAAAATTCTCAATTACTATAGATGAAGAAACCAAGATA  300

seq1  TTCCATGACAAAACCAAATTTACACAACCAAACTTACACAATATATCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGACAAAACCAAATTTACACAACCAAACTTACACAATATATCTCC  350

seq1  ATAAATCCAGTCCTTCAAAGGATAATAGATGGAAAAAGCCAACACAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCAGTCCTTCAAAGGATAATAGATGGAAAAAGCCAACACAACAA  400

seq1  AGGAAGCTAAACCATAGACAAAACAAGAAAGTAACCTTCTTTCAACGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTAAACCATAGACAAAACAAGAAAGTAACCTTCTTTCAACGAAC  450

seq1  CCAAAAGAAGATAGCAACGCAAATATAATAATATATATGAAATAAC-TTA  499
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CC-AAAGAAGATAGCAACGCAAATATAATAATATATATGAAATAACTTTA  499

seq1  GGCTACTGGTTACACATTTAATCAATAATATCCATTAGATTGCAATATGT  549
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCTACTGGTTACACATTTAATCAATAATATCCATTAGATTGCATTATGT  549

seq1  GTAGCTTCAAAAATCATGTTTGTTCTATATTTAAAGCTCATATTTCCATA  599
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  GTAGCTTC-AAAATCATGTTTGTTCTATATTTAAAGCTCATA-TTCCATA  597

seq1  CCTTATGACAAATAAAACAATGTGTTTGAAATATTTAAAAAACTAAATAA  649
       |||||||| |||||||| ||||||||||||||||  ||||||||||| |
seq2  -CTTATGAC-AATAAAAC-ATGTGTTTGAAATATT--AAAAACTAAAT-A  641

seq1  TCTTACCTTAGTAGGCAAATTATTAAATTGATTTCTATTGTTAATATCTA  699
      ||||||| || || ||||  |||| |||||| ||||| |||||| ||| |
seq2  TCTTACC-TATTA-GCAA--TATT-AATTGA-TTCTA-TGTTAA-ATC-A  682

seq1  TTTAGATACTACTGCAGTTTTTCATATTGAATAACATTTTATAGACCTAA  749
      ||||||||||||||||| ||||||| |||||| |||||    ||||| | 
seq2  TTTAGATACTACTGCAG-TTTTCAT-TTGAAT-ACATT---AAGACCCAT  726

seq1  ATTGCATTTTGAATTAGCTAATATAAAACTGTGCTAGTCTTTTTAATGAA  799
      |||||| |||||  ||||  | ||||| ||||||||||||||   |||||
seq2  ATTGCA-TTTGA--TAGC--AAATAAACCTGTGCTAGTCTTT---ATGAA  768