BAC Information

Click to search

BAC

Clone NameB6Ng01-021K22
ChromosomeX (Build37)
Map Location 158,584,740 - 158,585,826
singlet/doubletsinglet
Overlap geneNhs
Upstream geneScml2, LOC414364, Prkaca-ps1, Rai2, Gm47
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021K22.bB6Ng01-021K22.g
ACCDH854117DH854118
length1,081447
definitionDH854117|Mus musculus domesticus DNA, BAC clone: B6Ng01-021K22, 5' end.DH854118|Mus musculus domesticus DNA, BAC clone: B6Ng01-021K22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctcacatacactgctcttttgtgtttatcactttcctttggaa
cacaggcttatagtttttgttgttgttgtttgtttgcttgcttatcagac
ataagtgtataaaatagcatctgatgtatactaaatgaatgaagctggat
gataagataatcatgctttttagtattatacaaataacaaaaaatggcca
ttaaaaatgtaaatgttacctggtcaaactgagaatcagaatcatttgat
cagccagtgacatccttctcctgatcttgtatttcacagattcaggcaaa
ggcttccacctacttgggaagagcgatatacaccttctactctgtctgat
acagttttagtatcaacaaaagagctgatacaccaggcacagttatcaat
acccaatttaacatctctcaataacatgatgcagtcagtactattatctc
cactccatagcagatggaaagtctaccttctactctactacactgagaca
gtggagacagtatcagaacccacaaagtccaactacagaatccagccata
ctcctcatcacaaacgttcccactttcccggctcaccagacactcaccaa
cctccctcaaactgagcttaaggacactccaaaggtcctgaagtctcact
attgtcttagggaaaaagaacagggacataagatcctcatcaagtgcgct
caataaaggaagagaccaaattgcaatgcttggcttttcacaaacaaggt
gctcttgagcctgagaaatgagctgcagttccccaagagtccccttgcaa
tcttacaatgctgtcatttctagccaagacgacaaatctggtttgtcaaa
acaaagtatttattttattatacacaaaaatgaaaatggcccttctgatt
gctattaataagtccatttcagccatattaaccttatttccttttgatag
ggctattagaccaagagatcaaagatgctacagacatatggtattttgat
ttcagcaaaccatttgacatcctctcatatgatagatccttgtaagcagg
tggaaaatgttgtttagaataaaaaaggagg

aagatgtggtccctgagaggacacccagatgtgtctagacccgtgcagat
actggcagtattacatggactcctcaggtttttaaaaagagctcatgaag
tggggagagaaaagtagtggagtgggaagataaagatggaatttgaatgg
ctagaatagggagtggatttgatcaaaatatgttatatgcattagattcc
taggcaaaaatgggttctagcatcttgcaaacttatgatttgcaagacat
tgatctggttaccactgttacaactgtcatcaacataaccatcactatct
tcatcactattagcaagatcacatcattagtaccaaattttctacctata
tcatctctaccactactatcatgttatgatcatcttaacatcaacagcaa
cactccatcatcattgtcgtagttactatcatcatattcttttttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158584740_158585826
seq2: B6Ng01-021K22.b_48_1128

seq1  GAATTCCCTCACATACACTGCTCTTTTGTGTTTATCACTTTCCTTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCACATACACTGCTCTTTTGTGTTTATCACTTTCCTTTGGAA  50

seq1  CACAGGCTTATAGTTTTTGTTGTTGTTGTTTGTTTGCTTGCTTATCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTTATAGTTTTTGTTGTTGTTGTTTGTTTGCTTGCTTATCAGAC  100

seq1  ATAAGTGTATAAAATAGCATCTGATGTATACTAAATGAATGAAGCTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGTATAAAATAGCATCTGATGTATACTAAATGAATGAAGCTGGAT  150

seq1  GATAAGATAATCATGCTTTTTAGTATTATACAAATAACAAAAAATGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGATAATCATGCTTTTTAGTATTATACAAATAACAAAAAATGGCCA  200

seq1  TTAAAAATGTAAATGTTACCTGGTCAAACTGAGAATCAGAATCATTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGTAAATGTTACCTGGTCAAACTGAGAATCAGAATCATTTGAT  250

seq1  CAGCCAGTGACATCCTTCTCCTGATCTTGTATTTCACAGATTCAGGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGACATCCTTCTCCTGATCTTGTATTTCACAGATTCAGGCAAA  300

seq1  GGCTTCCACCTACTTGGGAAGAGCGATATACACCTTCTACTCTGTCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCACCTACTTGGGAAGAGCGATATACACCTTCTACTCTGTCTGAT  350

seq1  ACAGTTTTAGTATCAACAAAAGAGCTGATACACCAGGCACAGTTATCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTAGTATCAACAAAAGAGCTGATACACCAGGCACAGTTATCAAT  400

seq1  ACCCAATTTAACATCTCTCAATAACATGATGCAGTCAGTACTATTATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATTTAACATCTCTCAATAACATGATGCAGTCAGTACTATTATCTC  450

seq1  CACTCCATAGCAGATGGAAAGTCTACCTTCTACTCTACTACACTGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATAGCAGATGGAAAGTCTACCTTCTACTCTACTACACTGAGACA  500

seq1  GTGGAGACAGTATCAGAACCCACAAAGTCCAACTACAGAATCCAGCCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGACAGTATCAGAACCCACAAAGTCCAACTACAGAATCCAGCCATA  550

seq1  CTCCTCATCACAAACGTTCCCACTTTCCCGGCTCACCAGACACTCACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATCACAAACGTTCCCACTTTCCCGGCTCACCAGACACTCACCAA  600

seq1  CCTCCCTCAAACTGAGCTTAAGGACACTCCAAAGGTCCTGAAGTCTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCAAACTGAGCTTAAGGACACTCCAAAGGTCCTGAAGTCTCACT  650

seq1  ATTGTCTTAGGGAAAAAGAACAGGGACATAAGATCCTCATCAAGTGCGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTAGGGAAAAAGAACAGGGACATAAGATCCTCATCAAGTGCGCT  700

seq1  CAATAAAGGAAGAGACCAAATTGCAATGCTTGGCTTTTCACAAACAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGGAAGAGACCAAATTGCAATGCTTGGCTTTTCACAAACAAGGT  750

seq1  GCTCTTGAGCCTGAGAAATGAGCTGCAGTTCCCCAAGAGTCCCCTTGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGAGCCTGAGAAATGAGCTGCAGTTCCCCAAGAGTCCCCTTGCAA  800

seq1  TCTTACAATGCTGTCATTTCTAGCCAAGACGACAAATCTGGTTTGTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAATGCTGTCATTTCTAGCCAAGACGACAAATCTGGTTTGTCAAA  850

seq1  ACAAAGTATTTA-TTTATTATACACAAAAATGAAAATGGCCCTTCTGATT  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTATTTATTTTATTATACACAAAAATGAAAATGGCCCTTCTGATT  900

seq1  GCTATTAATAAGTCCAATTTCAGCCATATTAACCTTATTTCCTTTTTGAA  949
      ||||||||||||||| ||||||||||||||||||||||||||||||   |
seq2  GCTATTAATAAGTCC-ATTTCAGCCATATTAACCTTATTTCCTTTT--GA  947

seq1  TAGGGCTATTAGACCAAGAGATCAAAAGAATGCTACAGACATATGGTATT  999
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  TAGGGCTATTAGACCAAGAGATCAAA--GATGCTACAGACATATGGTATT  995

seq1  TTGATTTCAGCAAACCATTTGACAATCTCTCATAATGATAGAT-CTTGTA  1048
      ||||||||||||||||||||||||  ||||||| ||||||||| ||||||
seq2  TTGATTTCAGCAAACCATTTGACATCCTCTCAT-ATGATAGATCCTTGTA  1044

seq1  GGCAGGGTGGAGAAATG-TGGTTAGAATAAAAAAAGGAGG  1087
       ||| |||||| ||||| || ||||||| |||||||||||
seq2  AGCA-GGTGGA-AAATGTTGTTTAGAAT-AAAAAAGGAGG  1081


| Home | SequenceCutter | Blast | Download |