BAC Information

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BAC

Clone NameB6Ng01-022P10
ChromosomeX (Build37)
Map Location 10,759,999 - 10,871,266
singlet/doubletdoublet
Overlap genenone
Upstream geneRpgr, Otc, 4933416E14Rik, Tspan7, EG546265, LOC633354, LOC633361, LOC100042912, Mid1ip1, LOC668982, Ppia-psx_105.1
Downstream geneLOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663, 8430439B09Rik, LOC669520, Rpl23a-ps, LOC100043945, Bcor, 2900008C10Rik, LOC385323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022P10.bB6Ng01-022P10.g
ACCDH855019DH855020
length1,1361,145
definitionDH855019|Mus musculus domesticus DNA, BAC clone: B6Ng01-022P10, 5' end.DH855020|Mus musculus domesticus DNA, BAC clone: B6Ng01-022P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,870,132 - 10,871,266)(10,759,999 - 10,761,150)
sequence
gaattctgggctttaaggaactcatcactcagttccatcagttgttaata
taacagtacacgtgacttctccagagtgtgtgctgcatttgcaggcatag
ctgggcagaggtactcatctgttgtgttctccaaatgtgcttgggaaaac
taggtgtaaggaggctccaggagtctgctgcagggaaggaacacaggcct
gatccccatggtggccaatggaactagggctacactgaacacagacaaaa
cgtgttggtaagtggggtcagaagtagggcaagaggctaatacacggtga
gcgcatttggagctttgcacagaaagaacaggcttggatccttgtggaat
gaatgccatcccttccccatctttgaccacccacaacctcagtgatgtag
ttggcagagcagcaggcctctgtcttgaattcctcttctatggagcttta
gacttcactgagccaccggtcatcagaaagcacctagttcattcccagct
gctgggtctggcttgctctagttgcattgaatagcagaactttcttccgt
acttccctaagggtcatagcatgttatcctcacaactacactgtattttc
agatggcaactctgtgcatgtgtttctccctcactccctgtgtcttaaat
ccttttcctggacttcagtgtcttgtctgttttatgagtatatcttgctc
acttcctattatctggtcaggcttactgggggtccctcttcatttccttt
ctctgctccattccttgtcatcttgtagtctatctgcagaaacagttatt
ttcctttatggcagaccactgcgaggaatcttgtcaggttgccctcacac
ctcactggcattgggatgctctgcatctcagacagctgttacatgagtag
tttgcatgttcaggtgagtgttctgggaagcctggggctggagaagtgtg
tgtaggagaaccgtgtggagaggctccaggagtctgttggcagggatggg
aacaacgggcctgatcacatggtggtcattgggacatagctttttcccag
agttcagtcacagaagctctccctcaccccactgtgtttcctctttgctc
ataagaacctgaatggaagctatagtgccgttcctg
gaattccctgtggtctgttgtctgctccgagtatacagccgcgaagcctg
agcctctggtcttccttgaggacaacttcattctagtgtaatgggtcctt
ccttggaggcactgagaaaaggcaccttgagaatttcaggattctattgg
tagtgggaatttattttcccctctccccacctttaatgcgcctctaattc
tgacttcattgcagagccgtgaaatcaaattaggaaatgggaggagacga
gcaaccccttcaagcacaatcaacttctgatggcttccccaaagcgctaa
tgaatctgcatagacctccagtaatggaaggatcccctccaatccagcga
ttttggctttttacaccccgcaccccccactttctaaagagaaaagaagc
ttggagcataggtctgtcagtagtctccacaacgaggttttggaaagcct
tggtttgttacagctgagtggacaaagccttgggggaggacaaggaggct
gactacaggggagagaactcatgaccttaggcagcagcatccaaccctga
gagtggccctgttctgcacacaccaccaggctagacattgtgtgggaaca
aagagtcagaaagcacagtcctgttaaccttgtatggctaacaggctgtt
tgctcagagcattgctactccatgcgattaaaaatagcatctacattact
gaagagcttgttagaaatgcagaatttcaggcctcttgcccaagacttac
tgaatcagaatctcaatttttgacaatattcccaggggaattctggggac
tgcaatactgagatgctctggtccaaagaatatctcacacctgttcatgt
ggcataaacaatcaggacttcaagcctgtcccatgccacctttccagcct
cagttctcagcatcccctgttatcccttagagtcgtacatttgtcttata
gctgtatcttatcctttattcattctctcattatttccttcactggggat
tgtccaaataatccttctacctatccaaaatttctcttacaaattacagc
agtactgtacctgaatctgggccaagatccggtcatgtgttaaagtgttc
ctataacaaattgcctgactgacatgatcattgtgacaagtttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_10870132_10871266
seq2: B6Ng01-022P10.b_45_1180 (reverse)

seq1  CAGGAACGGCAGACATAAGCTTCCATCCAGG-TCTCTAGAGCAAAGAGGA  49
      ||||||||||  ||   ||||||||| |||| |||   ||||||||||||
seq2  CAGGAACGGC--ACTATAGCTTCCATTCAGGTTCTTATGAGCAAAGAGGA  48

seq1  AA-ACAGGTGGGTGAGGGAG-GCTTCTGTGACTGGACCTCTGGG-AAAAG  96
      || ||||  ||||||||||| |||||||||||| || ||||||| |||||
seq2  AACACAGTGGGGTGAGGGAGAGCTTCTGTGACT-GAACTCTGGGAAAAAG  97

seq1  CTATGTCCCATTGACCACCATGGTGATCAGGCCTG-TGTT-CCATCCCTG  144
      |||||||||| |||||||||| ||||||||||| | |||| |||||||||
seq2  CTATGTCCCAATGACCACCAT-GTGATCAGGCCCGTTGTTCCCATCCCTG  146

seq1  CC-ACAGACTCCTGGAGCCTCTTCCCACACGGTTCTCCTACACACACTTC  193
      || |||||||||||||||||||  ||||||||||||||||||||||||||
seq2  CCAACAGACTCCTGGAGCCTCT--CCACACGGTTCTCCTACACACACTTC  194

seq1  TCCAGCCCCAGGCTTCCCAGAACACTCACCTGAACATGCAAACTACTCAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCCAGGCTTCCCAGAACACTCACCTGAACATGCAAACTACTCAT  244

seq1  GTAACAGCTGTCTGAGATGCAGAGCATCCCAATGCCAGTGAGGTGTGAGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGCTGTCTGAGATGCAGAGCATCCCAATGCCAGTGAGGTGTGAGG  294

seq1  GCAGCCTGACAAGATTCCTCGCAGTGGTCTGCCATAAAGGAAAATAACTG  343
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTGACAAGATTCCTCGCAGTGGTCTGCCATAAAGGAAAATAACTG  344

seq1  TTTCTGCAGATAGACTACAAGATGACAAGGAATGGAGCAGAGAAAGGAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAGATAGACTACAAGATGACAAGGAATGGAGCAGAGAAAGGAAA  394

seq1  TGAAGAGGGACCCCCAGTAAGCCTGACCAGATAATAGGAAGTGAGCAAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGGACCCCCAGTAAGCCTGACCAGATAATAGGAAGTGAGCAAGA  444

seq1  TATACTCATAAAACAGACAAGACACTGAAGTCCAGGAAAAGGATTTAAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCATAAAACAGACAAGACACTGAAGTCCAGGAAAAGGATTTAAGA  494

seq1  CACAGGGAGTGAGGGAGAAACACATGCACAGAGTTGCCATCTGAAAATAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAGTGAGGGAGAAACACATGCACAGAGTTGCCATCTGAAAATAC  544

seq1  AGTGTAGTTGTGAGGATAACATGCTATGACCCTTAGGGAAGTACGGAAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGTTGTGAGGATAACATGCTATGACCCTTAGGGAAGTACGGAAGA  594

seq1  AAGTTCTGCTATTCAATGCAACTAGAGCAAGCCAGACCCAGCAGCTGGGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGCTATTCAATGCAACTAGAGCAAGCCAGACCCAGCAGCTGGGA  644

seq1  ATGAACTAGGTGCTTTCTGATGACCGGTGGCTCAGTGAAGTCTAAAGCTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTAGGTGCTTTCTGATGACCGGTGGCTCAGTGAAGTCTAAAGCTC  694

seq1  CATAGAAGAGGAATTCAAGACAGAGGCCTGCTGCTCTGCCAACTACATCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGAGGAATTCAAGACAGAGGCCTGCTGCTCTGCCAACTACATCA  744

seq1  CTGAGGTTGTGGGTGGTCAAAGATGGGGAAGGGATGGCATTCATTCCACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTGTGGGTGGTCAAAGATGGGGAAGGGATGGCATTCATTCCACA  794

seq1  AGGATCCAAGCCTGTTCTTTCTGTGCAAAGCTCCAAATGCGCTCACCGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCAAGCCTGTTCTTTCTGTGCAAAGCTCCAAATGCGCTCACCGTG  844

seq1  TATTAGCCTCTTGCCCTACTTCTGACCCCACTTACCAACACGTTTTGTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCTCTTGCCCTACTTCTGACCCCACTTACCAACACGTTTTGTCT  894

seq1  GTGTTCAGTGTAGCCCTAGTTCCATTGGCCACCATGGGGATCAGGCCTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGTGTAGCCCTAGTTCCATTGGCCACCATGGGGATCAGGCCTGT  944

seq1  GTTCCTTCCCTGCAGCAGACTCCTGGAGCCTCCTTACACCTAGTTTTCCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCCCTGCAGCAGACTCCTGGAGCCTCCTTACACCTAGTTTTCCC  994

seq1  AAGCACATTTGGAGAACACAACAGATGAGTACCTCTGCCCAGCTATGCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATTTGGAGAACACAACAGATGAGTACCTCTGCCCAGCTATGCCT  1044

seq1  GCAAATGCAGCACACACTCTGGAGAAGTCACGTGTACTGTTATATTAACA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCAGCACACACTCTGGAGAAGTCACGTGTACTGTTATATTAACA  1094

seq1  ACTGATGGAACTGAGTGATGAGTTCCTTAAAGCCCAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGAACTGAGTGATGAGTTCCTTAAAGCCCAGAATTC  1136

seq1: chrX_10759999_10761150
seq2: B6Ng01-022P10.g_66_1210

seq1  GAATTCCCTGTGGTCTGTTGTCTGCTCCGAGTATACAGCCGCGAAGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTGGTCTGTTGTCTGCTCCGAGTATACAGCCGCGAAGCCTG  50

seq1  AGCCTCTGGTCTTCCTTGAGGACAACTTCATTCTAGTGTAATGGGTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGGTCTTCCTTGAGGACAACTTCATTCTAGTGTAATGGGTCCTT  100

seq1  CCTTGGAGGCACTGAGAAAAGGCACCTTGAGAATTTCAGGATTCTATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGGCACTGAGAAAAGGCACCTTGAGAATTTCAGGATTCTATTGG  150

seq1  TAGTGGGAATTTATTTTCCCCTCTCCCCACCTTTAATGCGCCTCTAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGAATTTATTTTCCCCTCTCCCCACCTTTAATGCGCCTCTAATTC  200

seq1  TGACTTCATTGCAGAGCCGTGAAATCAAATTAGGAAATGGGAGGAGACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCATTGCAGAGCCGTGAAATCAAATTAGGAAATGGGAGGAGACGA  250

seq1  GCAACCCCTTCAAGCACAATCAACTTCTGATGGCTTCCCCAAAGCGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCCTTCAAGCACAATCAACTTCTGATGGCTTCCCCAAAGCGCTAA  300

seq1  TGAATCTGCATAGACCTCCAGTAATGGAAGGATCCCCTCCAATCCAGCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGCATAGACCTCCAGTAATGGAAGGATCCCCTCCAATCCAGCGA  350

seq1  TTTTGGCTTTTTACACCCCGCACCCCCCACTTTCTAAAGAGAAAAGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTTTTTACACCCCGCACCCCCCACTTTCTAAAGAGAAAAGAAGC  400

seq1  TTGGAGCATAGGTCTGTCAGTAGTCTCCACAACGAGGTTTTGGAAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCATAGGTCTGTCAGTAGTCTCCACAACGAGGTTTTGGAAAGCCT  450

seq1  TGGTTTGTTACAGCTGAGTGGACAAAGCCTTGGGGGAGGACAAGGAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTTACAGCTGAGTGGACAAAGCCTTGGGGGAGGACAAGGAGGCT  500

seq1  GACTACAGGGGAGAGAACTCATGACCTTAGGCAGCAGCATCCAACCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGGGGAGAGAACTCATGACCTTAGGCAGCAGCATCCAACCCTGA  550

seq1  GAGTGGCCCTGTTCTGCACACACCACCAGGCTAGACATTGTGTGGGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCCCTGTTCTGCACACACCACCAGGCTAGACATTGTGTGGGAACA  600

seq1  AAGAGTCAGAAAGCACAGTCCTGTTAACCTTGTATGGCTAACAGGCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAGAAAGCACAGTCCTGTTAACCTTGTATGGCTAACAGGCTGTT  650

seq1  TGCTCAGAGCATTGCTACTCCATGCGATTAAAAATAGCATCTACATTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAGCATTGCTACTCCATGCGATTAAAAATAGCATCTACATTACT  700

seq1  GAAGAGCTTGTTAGAAATGCAGAATTTCAGGCCTCTTGCCCAAGACTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTTGTTAGAAATGCAGAATTTCAGGCCTCTTGCCCAAGACTTAC  750

seq1  TGAATCAGAATCTCAATTTTTGACAATATTCCCAGGGGAATTCTGGGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGAATCTCAATTTTTGACAATATTCCCAGGGGAATTCTGGGGAC  800

seq1  TGCAATACTGAGATGCTCTGGTCCAAAGAATATCTCACACCTGTTCATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATACTGAGATGCTCTGGTCCAAAGAATATCTCACACCTGTTCATGT  850

seq1  GGCATAAACAATCAGGACTTCAAGCCTGTCCCATGCCACCTTTCCAGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAACAATCAGGACTTCAAGCCTGTCCCATGCCACCTTTCCAGCCT  900

seq1  CAGTTCTCAGCATCCCCTGTTATCCCTTAGAGTCGTACATTTGTCTTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCAGCATCCCCTGTTATCCCTTAGAGTCGTACATTTGTCTTATA  950

seq1  GCTGTATCTTATCCTTTATTCATTCTCTCATTATTTCCTTCACTGGAGA-  999
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  GCTGTATCTTATCCTTTATTCATTCTCTCATTATTTCCTTCACTGGGGAT  1000

seq1  TGTCCAAATTATCCTTTCTACCTAT-CAAAATTTCTC-TACAAATTACAG  1047
      ||||||||| |||| |||||||||| ||||||||||| ||||||||||||
seq2  TGTCCAAATAATCC-TTCTACCTATCCAAAATTTCTCTTACAAATTACAG  1049

seq1  CCAGGTACTGTACCTTGAATTCTGGGCCAAGATCCCAGTCATGTGTAATA  1097
      |   |||||||||| |||| ||||||||||||| || ||||||||| | |
seq2  C--AGTACTGTACC-TGAA-TCTGGGCCAAGAT-CCGGTCATGTGTTAAA  1094

seq1  GTGTTTCCCTATTACACATTTGCCCTGACTGACATGATCATTGTGACATG  1147
      |||||  ||||| ||| |||   ||||||||||||||||||||||||| |
seq2  GTGTT--CCTATAACAAATT--GCCTGACTGACATGATCATTGTGACAAG  1140

seq1  TTTGC  1152
      |||||
seq2  TTTGC  1145