BAC Information

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BAC

Clone NameB6Ng01-025F03
ChromosomeX (Build37)5 (Build37)
Map Location 42,678,412 - 42,678,59314,043,649 - 14,044,789
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC637141, Wdr40c, Wdr40b, LOC665585, 1110059M19Rik
Downstream geneLOC100040038, EG385346, LOC100040075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025F03.bB6Ng01-025F03.g
ACCDH856707DH856708
length6611,116
definitionDH856707|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F03, 5' end.DH856708|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,678,412 - 42,678,593)(14,043,649 - 14,044,789)
sequence
gaattctcatgtggtcatattgttgcaattctgaagtgctttgactttgt
tttcaaacctaaataatacagaaaagcgtgcttctttattgtagaaagag
agatctttaggaaactcatttaattaatctgaattaaactgcaacatcta
tcacacagcacaatctcactgcattctttcaatgcacacatttagtgtga
gtttgagctgatcagactatagtttatattttcgcttaagaataatttag
atattcctaaagacatgaaactcaagaaaaatgaagactgaagtgtggac
actatgcccctccttagaagtgggaacaaatcacccttggaaggagttac
agagacaaagtttggagctgagattaaagggtggaccatgtagagactgc
cttatccagggatccaccccataatcagcatccaaacgctgacaccattg
catacactagcaagattttatcgaaaggacccagatgtagctgtctcttg
tgagactataccggggcctagcaaacacagaagtggatgcccacagtcag
ctaatggatggatcacagggctcccaatggaggagctagagaaagtaccc
aaggagctaaagggatctgcaaccctataggtggatcaacattatgaact
aaccagtaccc
gaattcccttttccttgaaccttgaccaacattgttcttagatgttttct
ctctttttagccatgacaactgaggtaagatgaaatttcaaagttatttc
agttcgtatttcagtaattatgaaggattatgaacactttcaaagatagc
ccctccgccattttaatttctgcttctgagagctctctgttcacatcctt
agcacacattttaattgaatcattgcatatacatacttttcataaatctt
atcattatttttattcatctatgggaagaagcttatgaattgtttttact
ttctctttaatatatagttgtactggattttactaatatttataattaga
atgataaaaaaacatctttcttttattttaaaagtcagagagtcacaggc
caacttgccttcctttagctgactcagtgtattcagaattggacgttatt
ttctacgatgatcatctgtcccttcctttttgtggtctacgaagtgcaca
tggattaacccagctggcccagtccctcaggaactgaggatagttaatct
ccttcttgctatctcctgccaccaccagtccatctgttcatgtagagtga
gatagccgtacaggtggctactgcattgtttctcaagtctctttcgagct
ttcgagttccatcaatggtttggaaggtgagcattatagcagttgtttca
tgattgatattgtcattaccagtaagtggctcttctttgcatagtataag
caaagtgattattaaaaattcaaaccttttctgcttccattcctcaaaat
aacactaatggaagaatgcataatgcagttttagaaagatgtatacttgg
catgattatgctgtgttctttaagattcaagaactttccttcttgtcata
ttttccaacagttcatttggtttgatatttagacagggtctcattcagtt
gctacggcagtttctcaaactcataggcaacaaaacaaaccaacaacaac
aaaaacccctctgtatcgacgcagtagctgagatgaaatatgtgctacta
cactactgggatgcgtctaagtctcattactggtgatacgaactctactg
gccttggatctgtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_42678412_42678593
seq2: B6Ng01-025F03.b_522_703 (reverse)

seq1  GGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCC  50
      ||||||||||||||||||| ||||| ||||||||||||||||||| ||||
seq2  GGGTACTGGTTAGTTCATAATGTTGATCCACCTATAGGGTTGCAGATCCC  50

seq1  TTTAGTTCCTTGGGTGCTTTCTCTAGGTCCTCCATTGAGGGCTCTGTGAT  100
      ||||| ||||||||| |||||||||| |||||||||| | || |||||||
seq2  TTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGAT  100

seq1  CCATTCAATAGCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCCCCG  150
      |||| || ||||||||||||  ||||||||||||||||||||||||||||
seq2  CCATCCATTAGCTGACTGTGGGCATCCACTTCTGTGTTTGCTAGGCCCCG  150

seq1  GCATAGTCTCACAAGAGACAGCTATATCTGGG  182
      | |||||||||||||||||||||| |||||||
seq2  GTATAGTCTCACAAGAGACAGCTACATCTGGG  182

seq1: chr5_14043649_14044789
seq2: B6Ng01-025F03.g_67_1182

seq1  GAATTCCCTTTTCCTTGAACCTTGACCAACATTGTTCTTAGATGTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTTCCTTGAACCTTGACCAACATTGTTCTTAGATGTTTTCT  50

seq1  CTCTTTTTAGCCATGACAACTGAGGTAAGATGAAATTTCAAAGTTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTAGCCATGACAACTGAGGTAAGATGAAATTTCAAAGTTATTTC  100

seq1  AGTTCGTATTTCAGTAATTATGAAGGATTATGAACACTTTCAAAGATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGTATTTCAGTAATTATGAAGGATTATGAACACTTTCAAAGATAGC  150

seq1  CCCTCCGCCATTTTAATTTCTGCTTCTGAGAGCTCTCTGTTCACATCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCGCCATTTTAATTTCTGCTTCTGAGAGCTCTCTGTTCACATCCTT  200

seq1  AGCACACATTTTAATTGAATCATTGCATATACATACTTTTCATAAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATTTTAATTGAATCATTGCATATACATACTTTTCATAAATCTT  250

seq1  ATCATTATTTTTATTCATCTATGGGAAGAAGCTTATGAATTGTTTTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATTTTTATTCATCTATGGGAAGAAGCTTATGAATTGTTTTTACT  300

seq1  TTCTCTTTAATATATAGTTGTACTGGATTTTACTAATATTTATAATTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTAATATATAGTTGTACTGGATTTTACTAATATTTATAATTAGA  350

seq1  ATGATAAAAAAACATCTTTCTTTTATTTTAAAAGTCAGAGAGTCACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAAAAAACATCTTTCTTTTATTTTAAAAGTCAGAGAGTCACAGGC  400

seq1  CAACTTGCCTTCCTTTAGCTGACTCAGTGTATTCAGAATTGGACGTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGCCTTCCTTTAGCTGACTCAGTGTATTCAGAATTGGACGTTATT  450

seq1  TTCTACGATGATCATCTGTCCCTTCCTTTTTGTGGTCTACGAAGTGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACGATGATCATCTGTCCCTTCCTTTTTGTGGTCTACGAAGTGCACA  500

seq1  TGGATTAACCCAGCTGGCCCAGTCCCTCAGGAACTGAGGATAGTTAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAACCCAGCTGGCCCAGTCCCTCAGGAACTGAGGATAGTTAATCT  550

seq1  CCTTCTTGCTATCTCCTGCCACCACCAGTCCATCTGTTCATGTAGAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGCTATCTCCTGCCACCACCAGTCCATCTGTTCATGTAGAGTGA  600

seq1  GATAGCCGTACAGGTGGCTACTGCATTGTTTCTCAAGTCTCTTTCGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCGTACAGGTGGCTACTGCATTGTTTCTCAAGTCTCTTTCGAGCT  650

seq1  TTCGAGTTCCATCAATGGTTTGGAAGGTGAGCATTATAGCAGTTGTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGTTCCATCAATGGTTTGGAAGGTGAGCATTATAGCAGTTGTTTCA  700

seq1  TGATTGATATTGTCATTACCAGTAAGTGGCTCTTCTTTGCATAGTATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATATTGTCATTACCAGTAAGTGGCTCTTCTTTGCATAGTATAAG  750

seq1  CAAAGTGATTATTAAAAATTCAAACCTTTTCTGCTTCCATTCCTCAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGATTATTAAAAATTCAAACCTTTTCTGCTTCCATTCCTCAAAAT  800

seq1  AACACTAATGGAAGAATGCATAATGCAGTTTTAGAAAGATGTATACTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAATGGAAGAATGCATAATGCAGTTTTAGAAAGATGTATACTTGG  850

seq1  CATGATTATGCTGTGTTCTTTAAGATTCAAGAACTTTCCTTCTTGTCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTATGCTGTGTTCTTTAAGATTCAAGAACTTTCCTTCTTGTCATA  900

seq1  TTTTCCAACAGTTCATTTGGTTTGATATTTAGACAGGGTCTCATTCAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAACAGTTCATTTGGTTTGATATTTAGACAGGGTCTCATTCAGTT  950

seq1  GCTACGGCAGTTTCTCAAACTCATAGGCAAACAAAAACCAAAACCAAACA  1000
      ||||||||||||||||||||||||||||||        ||||| ||||| 
seq2  GCTACGGCAGTTTCTCAAACTCATAGGCAA--------CAAAA-CAAACC  991

seq1  AACAA-ACAAAAAACCCCTCCTGTATTCAGACCGCAAGTAGCTGAGATGA  1049
      ||||| |  |||||||||| ||||||  |   ||| ||||||||||||||
seq2  AACAACAACAAAAACCCCT-CTGTATCGA---CGC-AGTAGCTGAGATGA  1036

seq1  TATTATGTGCTACTACAACTAACTTGGTATGCGTCTTTACAGTCTCATTT  1099
       | ||||||||||||| ||||   ||| ||||||||    ||||||| ||
seq2  -AATATGTGCTACTAC-ACTA--CTGGGATGCGTCT---AAGTCTCA-TT  1078

seq1  ACTGGTGATACCGAACTCTTAACTGCCCTTGAGATCTGTCAA  1141
      |||||||||| ||||||||  |||| ||||| ||||||||||
seq2  ACTGGTGATA-CGAACTCT--ACTGGCCTTG-GATCTGTCAA  1116