BAC Information

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BAC

Clone NameB6Ng01-025H20
ChromosomeX (Build37)
Map Location 48,723,065 - 48,880,299
singlet/doubletdoublet
Overlap geneHs6st2
Upstream geneOlfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356
Downstream geneUsp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025H20.bB6Ng01-025H20.g
ACCDH856824DH856825
length1,1171,035
definitionDH856824|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H20, 5' end.DH856825|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,723,065 - 48,724,186)(48,879,263 - 48,880,299)
sequence
gaattcactgtctgaaatgaacaaacttaaggagcatcagtagcacatag
ctgtgaatgtgtacctcatgtaggtcttagctttgtgtgtttgtgcttaa
ccattatttgggcccatttgaagctttgagaggagaaattataactttta
taaacctaataatatctttcaagtacatttagtttttaagttttgtaata
cattaacacctgatcattatgaaaatatagtaaagagaatataaagagaa
gtgctcctgtctagggaaacaaaggaggccaatgggagggagaagagaag
gggaggagctgtgcgggaaggtgttcaccatacactgtgtacttgtatga
aagtgtctttatataacaaaaccacattcagtgaatatgcacaatgaaaa
ttaaaaaataaaagaattaactctataagagggatataaagagaaataca
gttatggtccttcacactgacaatccatacacccaccaccaggcttagag
cgaattagtattgtcaatttacagctgatttttttctttcggatgtattt
cagtacatttacacacacacacacacacacacacacacacacacacacac
acacacttctttaattacatatacttaatatcagttcatgccaacacaca
cgcacacacacacacatacacacacacacacacttttgcttcattttctt
taacagtgggcatgttgtatggtattaacatcccatgttttatttatgag
tgatttagttcatagctttattatactagctctctttctcatataaacaa
tattatgatgaatatatttgtatacacaaatgtgagcatgtattgagtat
ttataaagaagagaagacattcctgaaagtagaattctttggcaaaacac
attaagaatttttgttgggagctgtcaaatgtctatccaaaaatggctat
tctaattttgtatcaaaggttgtacactataaaactctaaatcatttttt
aattttttttaaatatttcttatttacatttcaatggttatccctgttcc
agtttccctctaaaagcccatccctcttccctctcccgtgccacaaccta
ctaactcctgcttcaag
gaattcactccagtctttatttttagtctattagaatatctagatggcac
attctaaaagctacttcaaagatgatgttccatgacagcattttccccca
gggctttgccttttttacacgccaagggtatgtgtgagtacagttcccca
gagcccacgccaagtgaccaacttacactttgagattattctctcaaagg
acaaggagctcattttttgtggtctgctttcccattttttctttgttttt
aaggttgcattcagaacacatagaaggggcttcgacagctctttcatcat
gttctatgaaaaaaatttatctgaaaaatagctcttgactccaccaaatc
gttcttatatttccccaacatagctttccttcatgctaacagggttgctt
gtccatcttctcttttaagaagtatgtgtttttcttatagttcttaggtg
taatatgctgtttgttaaaaaatgaaattgacacccataaaataacttgc
tctgtgatggcccagaatgtactatttgacattcctttttaaagtatttc
ctctttgctgtcttatctttccttttgcttagtattttccgaatgcctac
tttgtgccatgggcttattaagatataaactctaataataataattgtat
ttatagtaattatgtttataatttgttgatattgcaactatttttgcctc
ctaaattctaaactttaaggagtactttgtttcccaaaaacaaaaatcat
gaatgtgtttcttaaagattctttgaagatattacttctagcaggctgct
tactgaactcagtgccttctgcacgctaagcatgcttttttatttaaaag
ccacatcaccagcctgtagaaaataattgtattggattatgtaagatccc
agattaagctctactaaaacctatccttatcatttgtggttatatttgtc
tcctagttcggtttcatattagggagatttgccataattttagagatacc
cattttacggctgctataattagttatggctactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_48723065_48724186
seq2: B6Ng01-025H20.b_42_1158

seq1  GAATTCACTGTCTGAAATGAACAAACTTAAGGAGCATCAGTAGCACATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCTGAAATGAACAAACTTAAGGAGCATCAGTAGCACATAG  50

seq1  CTGTGAATGTGTACCTCATGTAGGTCTTAGCTTTGTGTGTTTGTGCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATGTGTACCTCATGTAGGTCTTAGCTTTGTGTGTTTGTGCTTAA  100

seq1  CCATTATTTGGGCCCATTTGAAGCTTTGAGAGGAGAAATTATAACTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTTGGGCCCATTTGAAGCTTTGAGAGGAGAAATTATAACTTTTA  150

seq1  TAAACCTAATAATATCTTTCAAGTACATTTAGTTTTTAAGTTTTGTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTAATAATATCTTTCAAGTACATTTAGTTTTTAAGTTTTGTAATA  200

seq1  CATTAACACCTGATCATTATGAAAATATAGTAAAGAGAATATAAAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACACCTGATCATTATGAAAATATAGTAAAGAGAATATAAAGAGAA  250

seq1  GTGCTCCTGTCTAGGGAAACAAAGGAGGCCAATGGGAGGGAGAAGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTGTCTAGGGAAACAAAGGAGGCCAATGGGAGGGAGAAGAGAAG  300

seq1  GGGAGGAGCTGTGCGGGAAGGTGTTCACCATACACTGTGTACTTGTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGCTGTGCGGGAAGGTGTTCACCATACACTGTGTACTTGTATGA  350

seq1  AAGTGTCTTTATATAACAAAACCACATTCAGTGAATATGCACAATGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTTTATATAACAAAACCACATTCAGTGAATATGCACAATGAAAA  400

seq1  TTAAAAAATAAAAGAATTAACTCTATAAGAGGGATATAAAGAGAAATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATAAAAGAATTAACTCTATAAGAGGGATATAAAGAGAAATACA  450

seq1  GTTATGGTCCTTCACACTGACAATCCATACACCCACCACCAGGCTTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGTCCTTCACACTGACAATCCATACACCCACCACCAGGCTTAGAG  500

seq1  CGAATTAGTATTGTCAATTTACAGCTGATTTTTTTCTTTCGGATGTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTAGTATTGTCAATTTACAGCTGATTTTTTTCTTTCGGATGTATTT  550

seq1  CAGTACATTTACACACACACACACACACACACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACATTTACACACACACACACACACACACACACACACACACACACAC  600

seq1  ACACACTTCTTTAATTACATATACTTAATATCAGTTCATGCCAACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTCTTTAATTACATATACTTAATATCAGTTCATGCCAACACACA  650

seq1  CGCACACACACACACATACACACACACACACACTTTTGCTTCATTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACACACACACATACACACACACACACACTTTTGCTTCATTTTCTT  700

seq1  TAACAGT-GGCATGTTGTATGGTATTAACATCCCATG-TTTATTTATGAG  748
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  TAACAGTGGGCATGTTGTATGGTATTAACATCCCATGTTTTATTTATGAG  750

seq1  TGATTTAGTTCATAGC-TTATTATACTAGCTCTCTTTCTCATATAAACAA  797
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGATTTAGTTCATAGCTTTATTATACTAGCTCTCTTTCTCATATAAACAA  800

seq1  TATTATGATGAATATATTTGTATACACAAATGTGAGCATGTATTGAGTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGATGAATATATTTGTATACACAAATGTGAGCATGTATTGAGTAT  850

seq1  TTATAAAGAAGAGAAGACATTCCTGAAAGTAGAATTC-TTGGC-AAACAC  895
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  TTATAAAGAAGAGAAGACATTCCTGAAAGTAGAATTCTTTGGCAAAACAC  900

seq1  A-TAAGAATTTTTGTTGGAAGCTGTCAAATGTCTATCC-AGAATTGCTAT  943
      | |||||||||||||||| ||||||||||||||||||| | ||| |||||
seq2  ATTAAGAATTTTTGTTGGGAGCTGTCAAATGTCTATCCAAAAATGGCTAT  950

seq1  TCTAATTTTGTATCAAAGGTTGTACACTATTAAAACTCTTAATATCATTT  993
      ||||||||||||||||||||||||||||| |||||||||  | |||||||
seq2  TCTAATTTTGTATCAAAGGTTGTACACTA-TAAAACTCT--AAATCATTT  997

seq1  TTTAAATTTTTTTTAGATATTTTCTTTATTTACATTTCAAATGTTATCCC  1043
      ||| ||||||||||| ||||||   |||||||||||||||  ||||| ||
seq2  TTT-AATTTTTTTTAAATATTT--CTTATTTACATTTCAATGGTTAT-CC  1043

seq1  CTGTCCTAGTTTCCCCTCCTAAAAGCCCCAACCCTTCTCCCCTC-CCCCT  1092
      |||| | ||||||||   ||||||||||  | || ||| ||||| ||| |
seq2  CTGTTCCAGTTTCCC--TCTAAAAGCCC--ATCCCTCTTCCCTCTCCCGT  1089

seq1  GCTCACCAACCTACTTACTCCTGCTTCCAG  1122
      || || ||||||||| ||||||||||| ||
seq2  GC-CA-CAACCTACTAACTCCTGCTTCAAG  1117

seq1: chrX_48879263_48880299
seq2: B6Ng01-025H20.g_68_1102 (reverse)

seq1  AAGTAGCATTTAACTAATATATAAGCAGCCGTAAAATGTGTATACTCTAA  50
      |||||||   |||||||| ||| ||||||||||||||| |||| ||||||
seq2  AAGTAGC-CATAACTAAT-TAT-AGCAGCCGTAAAATGGGTAT-CTCTAA  46

seq1  AATTATGACAAATCTACCTTAATATGATAACGAACTA-GAGACAAAATAA  99
      ||||||| ||||||| || |||||||| | ||||||| ||||||||   |
seq2  AATTATGGCAAATCT-CCCTAATATGAAACCGAACTAGGAGACAAATATA  95

seq1  ACAACAAATGATAAAGAATAGGTTTTAGTAGAAGCTTAATCTGGGATCTT  149
      || ||||||||| ||| |||||||||||||| ||||||||||||||||||
seq2  ACCACAAATGAT-AAGGATAGGTTTTAGTAG-AGCTTAATCTGGGATCTT  143

seq1  ACAT-ATCCAATACAATTATTTTCTTCAGGCTGGTGATGTGGCTTTTAAA  198
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACATAATCCAATACAATTATTTTCTACAGGCTGGTGATGTGGCTTTTAAA  193

seq1  T-ATAAAGCATGCTTAGCGTGCAGAAGGCACTGAGTTCAGTAAGCAGCCC  247
      | | ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAAAAAAGCATGCTTAGCGTGCAGAAGGCACTGAGTTCAGTAAGCAG-CC  242

seq1  TGCTAGAAGTATTATCTTCAAAGAATCTTTAAGAAACACATTCATGATTT  297
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAAGTAATATCTTCAAAGAATCTTTAAGAAACACATTCATGATTT  292

seq1  TTGTTTTTGGGAAACAAAGTACTCCTT-AAGTTTAGAATTTAGGAGGC-A  345
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TTGTTTTTGGGAAACAAAGTACTCCTTAAAGTTTAGAATTTAGGAGGCAA  342

seq1  AAATAGTTGCAATATCAAC-AATTATAAACATAATTACTATAAATACAAT  394
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATAGTTGCAATATCAACAAATTATAAACATAATTACTATAAATACAAT  392

seq1  TATTATTATTAGAGTTTATATCTTAATAAGCCCATGGCACAAAGTAGGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTAGAGTTTATATCTTAATAAGCCCATGGCACAAAGTAGGCA  442

seq1  TTCGGAAAATACTAAGCAAAAGGAAAGATAAGACAGCAAAGAGGAAATAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAAAATACTAAGCAAAAGGAAAGATAAGACAGCAAAGAGGAAATAC  492

seq1  TTTAAAAAGGAATGTCAAATAGTACATTCTGGGCCATCACAGAGCAAGTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGGAATGTCAAATAGTACATTCTGGGCCATCACAGAGCAAGTT  542

seq1  ATTTTATGGGTGTCAATTTCATTTTTTAACAAACAGCATATTACACCTAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGGGTGTCAATTTCATTTTTTAACAAACAGCATATTACACCTAA  592

seq1  GAACTATAAGAAAAACACATACTTCTTAAAAGAGAAGATGGACAAGCAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATAAGAAAAACACATACTTCTTAAAAGAGAAGATGGACAAGCAAC  642

seq1  CCTGTTAGCATGAAGGAAAGCTATGTTGGGGAAATATAAGAACGATTTGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGCATGAAGGAAAGCTATGTTGGGGAAATATAAGAACGATTTGG  692

seq1  TGGAGTCAAGAGCTATTTTTCAGATAAATTTTTTTCATAGAACATGATGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAAGAGCTATTTTTCAGATAAATTTTTTTCATAGAACATGATGA  742

seq1  AAGAGCTGTCGAAGCCCCTTCTATGTGTTCTGAATGCAACCTTAAAAACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGTCGAAGCCCCTTCTATGTGTTCTGAATGCAACCTTAAAAACA  792

seq1  AAGAAAAAATGGGAAAGCAGACCACAAAAAATGAGCTCCTTGTCCTTTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAATGGGAAAGCAGACCACAAAAAATGAGCTCCTTGTCCTTTGA  842

seq1  GAGAATAATCTCAAAGTGTAAGTTGGTCACTTGGCGTGGGCTCTGGGGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAATCTCAAAGTGTAAGTTGGTCACTTGGCGTGGGCTCTGGGGAA  892

seq1  CTGTACTCACACATACCCTTGGCGTGTAAAAAAGGCAAAGCCCTGGGGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTCACACATACCCTTGGCGTGTAAAAAAGGCAAAGCCCTGGGGGA  942

seq1  AAATGCTGTCATGGAACATCATCTTTGAAGTAGCTTTTAGAATGTGCCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGTCATGGAACATCATCTTTGAAGTAGCTTTTAGAATGTGCCAT  992

seq1  CTAGATATTCTAATAGACTAAAAATAAAGACTGGAGTGAATTC  1037
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATTCTAATAGACTAAAAATAAAGACTGGAGTGAATTC  1035