BAC Information

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BAC

Clone NameB6Ng01-025P11
ChromosomeX (Build37)
Map Location 136,556,210 - 136,707,765
singlet/doubletdoublet
Overlap geneGm719, E230019M04Rik, LOC622213
Upstream geneSerpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2, Morc4, Rbm41
Downstream geneLOC100041446, EG245643, LOC666424, Prps1, Tsc22d3, Mid2, LOC619612, Tex13, LOC632685, Vsig1, Psmd10, Atg4a, LOC100038961, Col4a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025P11.bB6Ng01-025P11.g
ACCDH857148DH857149
length1,042898
definitionDH857148|Mus musculus domesticus DNA, BAC clone: B6Ng01-025P11, 5' end.DH857149|Mus musculus domesticus DNA, BAC clone: B6Ng01-025P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,556,210 - 136,557,257)(136,706,862 - 136,707,765)
sequence
gaattcaatagttatctacactgataaattttgctgatttgggggtgagg
aaggcttcagtatttgtctttccattttgggtccaattctgagtatataa
aacatacatgttttaccaagatcaaaattgcatataaaagataaatttaa
aagtcctgcttcattgatattgccaataccgtacctgtccccattccgtg
ttttcattaatttctagttaaattgtagaatctcttcagagctcatgtgg
gcataccctgaacaacccttgagtcagtgtggtcactgaaagcacaatgt
gtgtcatacattttcgtacctacaacattatgtataaaacaaactcctac
ctgaattaaggttaatccactgcagggattccatatgagcattcagaatt
ttgcagatctgctccagctgaaaatacaccaaagacttttagattatgat
tattgtaatgtagtaaacgaaaaagaaaacaacacaggaaattgaaatta
ggaaacaacatttaattttgttctggtaagtggcgcattgacaatgaact
acatattaatggtgctttgctatttcatacttatacactaatttttatgc
attagttccatctattcatttggtaactgtcaagagttagattcctacaa
atcaattaaaaaaactgacaagcacaatataaaaataaaggatactagga
aatgtttcaaaagaaagcaaataaataaatccatttaaaattaataacat
caaatttgtcaatcaaatctgcatattttttggggaacactagcttgtta
tgtagtacagactggcctggaacttaataatgtagcccaggtccttcctc
agcctcctgggtgatatggtaacatgcatggcacctcaaatttattattt
taaaaaggatagcattcaatagttaagtattacattgattattccttact
caaatgcttggaatataattgttttagatttcttttcaatttggaacatg
cattaaatataatgaaatatcccgattggaaacagattaaac
gaattcttctttctgctacagctcatctactaccattttccatcccaata
ccattactttatgttttgtgtatggagtaggggtttctcttaccccatat
gtgtttgcttaggccccttctgcttgaaaaaccttgttttcagtcatact
cacaaagaatgtatgccaggataaaattcaaaatctgttgtggcaaaatt
tccttacagaaactttttgtactattgcttgtttctaattggaataacag
tgtccagtgggttatcattatatatcctggtcttattgctactatattat
atgttctttagaattacttgagttcatttaaggatggagcttgtattttc
ttcatttgtattcttccaacacttagcacagggcctgctggtacaaattt
ttattgcatgcagaaaaaaaaaggaagggaagagaaagctgaagcaataa
taagaaggctagaatgcaaagagaaacaagaggataaatgtggaggagat
gaagacaaaagagagagggagagagagatgagacagagagagagaaaagg
agaggagggttaagttccacattagtttgagggtgttttaagaaactggc
gagagttctgggcccaggatcatctccatggcaggtgatctatgtcaagg
aatggactgaagaaacccttggagatagctagaaatgcaagctaagggac
tgtcatctgggacaccactggcagttgtagcataaggcaccagaatatag
agatgagagcctgctgggctgctagaaccagagatgcaaaaccatcagtt
atcaataaccagaaccaggccatggggacttcagagtgactgcttccact
ggctaggattctccttcacacaagctgttggtttcacatctgtgaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_136556210_136557257
seq2: B6Ng01-025P11.b_38_1079

seq1  GAATTCAATAGTTATCTACACTGATAAATTTTGCTGATTTGGGGGTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTTATCTACACTGATAAATTTTGCTGATTTGGGGGTGAGG  50

seq1  AAGGCTTCAGTATTTGTCTTTCCATTTTGGGTCCAATTCTGAGTATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCAGTATTTGTCTTTCCATTTTGGGTCCAATTCTGAGTATATAA  100

seq1  AACATACATGTTTTACCAAGATCAAAATTGCATATAAAAGATAAATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACATGTTTTACCAAGATCAAAATTGCATATAAAAGATAAATTTAA  150

seq1  AAGTCCTGCTTCATTGATATTGCCAATACCGTACCTGTCCCCATTCCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGCTTCATTGATATTGCCAATACCGTACCTGTCCCCATTCCGTG  200

seq1  TTTTCATTAATTTCTAGTTAAATTGTAGAATCTCTTCAGAGCTCATGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTAATTTCTAGTTAAATTGTAGAATCTCTTCAGAGCTCATGTGG  250

seq1  GCATACCCTGAACAACCCTTGAGTCAGTGTGGTCACTGAAAGCACAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCCTGAACAACCCTTGAGTCAGTGTGGTCACTGAAAGCACAATGT  300

seq1  GTGTCATACATTTTCGTACCTACAACATTATGTATAAAACAAACTCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATACATTTTCGTACCTACAACATTATGTATAAAACAAACTCCTAC  350

seq1  CTGAATTAAGGTTAATCCACTGCAGGGATTCCATATGAGCATTCAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTAAGGTTAATCCACTGCAGGGATTCCATATGAGCATTCAGAATT  400

seq1  TTGCAGATCTGCTCCAGCTGAAAATACACCAAAGACTTTTAGATTATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATCTGCTCCAGCTGAAAATACACCAAAGACTTTTAGATTATGAT  450

seq1  TATTGTAATGTAGTAAACGAAAAAGAAAACAACACAGGAAATTGAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAATGTAGTAAACGAAAAAGAAAACAACACAGGAAATTGAAATTA  500

seq1  GGAAACAACATTTAATTTTGTTCTGGTAAGTGGCGCATTGACAATGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAACATTTAATTTTGTTCTGGTAAGTGGCGCATTGACAATGAACT  550

seq1  ACATATTAATGGTGCTTTGCTATTTCATACTTATACACTAA-TTTTATGC  599
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACATATTAATGGTGCTTTGCTATTTCATACTTATACACTAATTTTTATGC  600

seq1  ATTAGTTCCATCTATTCATTTGGTAACTGTCAAGAGTTAGATTCCTACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCCATCTATTCATTTGGTAACTGTCAAGAGTTAGATTCCTACAA  650

seq1  ATCAATTAAAAAAACTGACAAGCACAATATAAAAATAAAGGATACTAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTAAAAAAACTGACAAGCACAATATAAAAATAAAGGATACTAGGA  700

seq1  AATGTTTCAAAAGAAAGCAAATAAATAAATCCATTTAAAATTAATAACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCAAAAGAAAGCAAATAAATAAATCCATTTAAAATTAATAACAT  750

seq1  CAAATTTGTCAATCAAATCTGCATA-TTTTTGGGGAACACTAGCTTGTTA  798
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAATTTGTCAATCAAATCTGCATATTTTTTGGGGAACACTAGCTTGTTA  800

seq1  TGTAGTACAGACTGGCCTGGAACTTAATAATGTAGCCCAGGTCCTTCCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTACAGACTGGCCTGGAACTTAATAATGTAGCCCAGGTCCTTCCTC  850

seq1  AGCCTCCTGGGTGATATGGTAACATGCATGGCACCTCAAATTTATTATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTGGGTGATATGGTAACATGCATGGCACCTCAAATTTATTATTT  900

seq1  TAAAAAATGATAGCATTCAATAGTTAAGTA-TACATTGATTATTCCTTAC  947
      | ||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  T-AAAAAGGATAGCATTCAATAGTTAAGTATTACATTGATTATTCCTTAC  949

seq1  TCAAATGCTTGGAATATAATTGTTTTAGATTTTCTTTTCAAATTTTGGAA  997
      ||||||||||||||||||||||||||||| |||||||||||  |||||||
seq2  TCAAATGCTTGGAATATAATTGTTTTAGA-TTTCTTTTCAA--TTTGGAA  996

seq1  CATTGCATTATATATAATGAAATATTCCAGATTTGGAAAACAAGATTAAA  1047
      || ||||||| ||||||||||||| ||| || |||||||   ||||||||
seq2  CA-TGCATTAAATATAATGAAATA-TCCCGA-TTGGAAA--CAGATTAAA  1041

seq1  C  1048
      |
seq2  C  1042

seq1: chrX_136706862_136707765
seq2: B6Ng01-025P11.g_68_965 (reverse)

seq1  TATTCACAGATGTGAAAACCAACAGCTTGTGTGAAGGGAGAATCCTAGCC  50
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  TATTCACAGATGTG-AAACCAACAGCTTGTGTGAA-GGAGAATCCTAGCC  48

seq1  AGTTGGAAGCAGTCACTCTGAGGTCCCCATGGCCTGGTTCTGGTTATTGA  100
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AG-TGGAAGCAGTCACTCTGAAGTCCCCATGGCCTGGTTCTGGTTATTGA  97

seq1  TAACTGATGGTTTTGCCATCTCTGGTTCTAGCAGCCCAGCAGGCTCTCAT  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAACTGATGGTTTTG-CATCTCTGGTTCTAGCAGCCCAGCAGGCTCTCAT  146

seq1  CCTCTTATATTCTGGTGCCTTTTGCTACAACTGCCAGTGGTGTCCCAGAT  200
       ||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  -CTC-TATATTCTGGTGCCTTATGCTACAACTGCCAGTGGTGTCCCAGAT  194

seq1  GACAGTCCCTTAGCTTGCATTTCTAGCTATCTCCAAGGGTTTCTTCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCCCTTAGCTTGCATTTCTAGCTATCTCCAAGGGTTTCTTCAGTC  244

seq1  CATTCCTTGACATAGATCACCTGCCATGGAGATGATCCTGGGCCCAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTGACATAGATCACCTGCCATGGAGATGATCCTGGGCCCAGAAC  294

seq1  TCTCGCCAGTTTCTTTAAACAACCTCAAACTAATGTGGAACTTAACCCTC  350
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  TCTCGCCAGTTTCTTAAAACACCCTCAAACTAATGTGGAACTTAACCCTC  344

seq1  CTCTCCTTTTCTCTCTCTCTGTCTCATCTCTCTCTCCCTCTCTCTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTTTCTCTCTCTCTGTCTCATCTCTCTCTCCCTCTCTCTTTTGT  394

seq1  CTTCATCTCCTCCACATTTATCCTCTTGTTTCTCTTTGCATTCTAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTCCTCCACATTTATCCTCTTGTTTCTCTTTGCATTCTAGCCTT  444

seq1  CTTATTATTGCTTCAGCTTTCTCTTCCCTTCCTTTTTTTTTCTGCATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATTGCTTCAGCTTTCTCTTCCCTTCCTTTTTTTTTCTGCATGCA  494

seq1  ATAAAAATTTGTACCAGCAGGCCCTGTGCTAAGTGTTGGAAGAATACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTTGTACCAGCAGGCCCTGTGCTAAGTGTTGGAAGAATACAAA  544

seq1  TGAAGAAAATACAAGCTCCATCCTTAAATGAACTCAAGTAATTCTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAATACAAGCTCCATCCTTAAATGAACTCAAGTAATTCTAAAGA  594

seq1  ACATATAATATAGTAGCAATAAGACCAGGATATATAATGATAACCCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAATATAGTAGCAATAAGACCAGGATATATAATGATAACCCACTG  644

seq1  GACACTGTTATTCCAATTAGAAACAAGCAATAGTACAAAAAGTTTCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTTATTCCAATTAGAAACAAGCAATAGTACAAAAAGTTTCTGTA  694

seq1  AGGAAATTTTGCCACAACAGATTTTGAATTTTATCCTGGCATACATTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTTTGCCACAACAGATTTTGAATTTTATCCTGGCATACATTCTT  744

seq1  TGTGAGTATGACTGAAAACAAGGTTTTTCAAGCAGAAGGGGCCTAAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTATGACTGAAAACAAGGTTTTTCAAGCAGAAGGGGCCTAAGCAA  794

seq1  ACACATATGGGGTAAGAGAAACCCCTACTCCATACACAAAACATAAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATGGGGTAAGAGAAACCCCTACTCCATACACAAAACATAAAGTA  844

seq1  ATGGTATTGGGATGGAAAATGGTAGTAGATGAGCTGTAGCAGAAAGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATTGGGATGGAAAATGGTAGTAGATGAGCTGTAGCAGAAAGAAGA  894

seq1  ATTC  904
      ||||
seq2  ATTC  898