BAC Information

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BAC

Clone NameB6Ng01-027L15
ChromosomeX (Build37)4 (Build37)
Map Location 53,340,916 - 53,341,9348,331,089 - 8,331,639
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027L15.bB6Ng01-027L15.g
ACCDH858394DH858395
length1,011742
definitionDH858394|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L15, 5' end.DH858395|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,340,916 - 53,341,934)(8,331,089 - 8,331,639)
sequence
gaattctattacctgaagacatacagaaaaagttaaaagaactaaatatc
cccttaataatatacttatccttctaagaaacatctccttcaatgaagaa
tcttccagagatctcatattgtatattttcacttaataaacttatgcatc
ttggagcatcttttccacacagatacacatagggtaccttcattaaagca
cttaccactgttttgaagttaacagttacttgctattggaggatttttct
cactcatctttttgtgtgcaacttatgacttcttcaagcataaagttgcc
agtaaattcacaagtttcaagaatttcatagatgtgttcatctattgctt
gtggcctgtttgacatgagtttgcatttttgcatacacacatatttttgg
agttcttgactgttatgtgtatatgtttctgtaaaacactcaggagatga
gcacacttttattcatggtaagaaatctcttagtaaaatgtggacaggat
cactgaatgtccaccacctagcatttcaaggatgtgccagttgatctctg
gagcagctacaattctttttttttttccattttttattaggtatttaact
catttacatttccaatgctataccaaaagtcccccatatccacccacccc
cactcccctgcccacccactccccctttttggccctggtattcccctgta
ctggggcatataaagtttgcaagtccatgggcctctctttccagtgatgg
ccgactaggccatcttttgatatatatgcagctagagtcaagagctccgg
ggtactggttagctcataatgttgttccaacctatagggttgcagatccc
tttagctccttggctactttctctagctcctccattgggagcccattgat
ccatccattagctgactgtgagcatcacttctgtgtttgctgggcccggc
atagtctcacagagacagctactctgcgtcctttaaaaaatcttgccagt
gatgcatggtg
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tcgaatgctttttccgcatctaacgagatgatcatgtggtttttgtcttt
gtttttgtttatatagtggattacattgatggattaccatatattaaacc
agccctgcatccctcaaatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggatttggttaacgagaattttattgagtatttttac
atcgatattcataagggaaattggactgaagttctctatcttttttgggt
ctttctgtggtttaggtattaattaggtaaaggcagtaattgtggcatca
tagaatgtgttgggtagagtaccttctgcttctattttgtggaatagttt
gtgcagaaatggaattagatcttctttggtggtctgatagaactctgcac
taaacccatctggtcctggacttttttggttgggacactattaatgactg
ctcctatttctttaggggatataggactgtttatatcattagtctgatcc
ttatttaactttggtacctggtatctgtctagaaatttgaccatttcatc
caggttttccagtttttgttaagtgtagccttttatagaaggatctgatg
gtgttttgggatttcttcaggatctgttgttatgtctcccctttcatttc
tgattttgttaattaggatgctgtccctgtaccctctagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_53340916_53341934
seq2: B6Ng01-027L15.b_44_1054 (reverse)

seq1  CACCATTGCATACACTAGCAAGATTTTATTGAAAGGACGCAGATGTAGCT  50
      ||||| ||||| |||| |||||||||  || |||||||||||| ||||||
seq2  CACCA-TGCAT-CACTGGCAAGATTT--TTTAAAGGACGCAGA-GTAGCT  45

seq1  GTCTCTTGTGAGACTATGCCGGGGCCCAGCAAACACAGAAGTGGATGCTC  100
      ||||| |||||||||||||| ||||||||||||||||||||| |||||||
seq2  GTCTC-TGTGAGACTATGCC-GGGCCCAGCAAACACAGAAGT-GATGCTC  92

seq1  ACAGTCAGCTAATGGATGGATCATTGGGCTCCCAATGGAGGAGCTAGAGA  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAGTCAGCTAATGGATGGATCAATGGGCTCCCAATGGAGGAGCTAGAGA  142

seq1  AAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGG-TGGAACAACA  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTTGGAACAACA  192

seq1  TTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATATAT  242

seq1  CAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTT  299
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA-TGGACTT  291

seq1  GCAAACTTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAAGGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAAGGGGG  341

seq1  AGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTA  391

seq1  TAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAA  441

seq1  AAAAAGAATTGTAGCTGCTCCAGAGATCAACTGGCACATCCTTGAAATGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAATTGTAGCTGCTCCAGAGATCAACTGGCACATCCTTGAAATGC  491

seq1  TAGGTGGTGGACATTCAGTGATCCTGTCCACATTTTACTAAGAGATTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGTGGACATTCAGTGATCCTGTCCACATTTTACTAAGAGATTTCT  541

seq1  TACCATGAATAAAAGTGTGCTCATCTCCTGAGTGTTTTACAGAAACATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGAATAAAAGTGTGCTCATCTCCTGAGTGTTTTACAGAAACATAT  591

seq1  ACACATAACAGTCAAGAACTCCAAAAATATGTGTGTATGCAAAAATGCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAACAGTCAAGAACTCCAAAAATATGTGTGTATGCAAAAATGCAA  641

seq1  ACTCATGTCAAACAGGCCACAAGCAATAGATGAACACATCTATGAAATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTCAAACAGGCCACAAGCAATAGATGAACACATCTATGAAATTC  691

seq1  TTGAAACTTGTGAATTTACTGGCAACTTTATGCTTGAAGAAGTCATAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTTGTGAATTTACTGGCAACTTTATGCTTGAAGAAGTCATAAGT  741

seq1  TGCACACAAAAAGATGAGTGAGAAAAATCCTCCAATAGCAAGTAACTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAAAAAGATGAGTGAGAAAAATCCTCCAATAGCAAGTAACTGTT  791

seq1  AACTTCAAAACAGTGGTAAGTGCTTTAATGAAGGTACCCTATGTGTATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAAACAGTGGTAAGTGCTTTAATGAAGGTACCCTATGTGTATCT  841

seq1  GTGTGGAAAAGATGCTCCAAGATGCATAAGTTTATTAAGTGAAAATATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAAAAGATGCTCCAAGATGCATAAGTTTATTAAGTGAAAATATAC  891

seq1  AATATGAGATCTCTGGAAGATTCTTCATTGAAGGAGATGTTTCTTAGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGATCTCTGGAAGATTCTTCATTGAAGGAGATGTTTCTTAGAAG  941

seq1  GATAAGTATATTATTAAGGGGATATTTAGTTCTTTTAACTTTTTCTGTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTATATTATTAAGGGGATATTTAGTTCTTTTAACTTTTTCTGTAT  991

seq1  GTCTTCAGGTAATAGAATTC  1019
      ||||||||||||||||||||
seq2  GTCTTCAGGTAATAGAATTC  1011

seq1: chr4_8331089_8331639
seq2: B6Ng01-027L15.g_247_809 (reverse)

seq1  TCACTAAAGGGTACAGGGAAAGCATCCTAATTAACAAAATCAGAAATGAA  50
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TCACTAGAGGGTACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAA  50

seq1  AAGGGAGACATAACAACAGATCCTGAAGAAAT-CCAAAACACCATCAGAT  99
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGGGAGACATAACAACAGATCCTGAAGAAATCCCAAAACACCATCAGAT  100

seq1  CCTTCTACAAAAGGCTATACTCAAC-AAAACTGGAAAACCTGGACTAAAT  148
      ||||||| ||||||||| ||| ||| ||||||||||||||||||  ||||
seq2  CCTTCTATAAAAGGCTACACTTAACAAAAACTGGAAAACCTGGATGAAAT  150

seq1  GGACAAATTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAAG  198
      || ||||||||||||||||||||||||||||||||||||| |||||||  
seq2  GGTCAAATTTCTAGACAGATACCAGGTACCAAAGTTAAATAAGGATCAGA  200

seq1  TTAATGATCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTCATT  248
       ||||||| |||||||||| ||||||||||||||||||| ||||||||||
seq2  CTAATGATATAAACAGTCCTATATCCCCTAAAGAAATAGGAGCAGTCATT  250

seq1  AATAGTCTCCCAGCCAAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAG  298
      |||||| ||||| ||  ||||||| |||||||||||||||||||||||||
seq2  AATAGTGTCCCAACC--AAAAAAGTCCAGGACCAGATGGGTTTAGTGCAG  298

seq1  AGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTA  348
      ||||||||||||||  ||||||||||||||||||| ||||||||||||||
seq2  AGTTCTATCAGACCACCAAAGAAGATCTAATTCCATTTCTGCACAAACTA  348

seq1  TTCCACAAAATAGAAGAAGAAGGTACTCTACCCAACTCATTCTATGAAGC  398
      |||||||||||||||| ||||||||||||||||||| |||||||||| ||
seq2  TTCCACAAAATAGAAGCAGAAGGTACTCTACCCAACACATTCTATGATGC  398

seq1  TACAATTACT------------CTGATACCTAAACCACAGAAAGATCCAA  436
       |||||||||             | |||||||||||||||||||| ||||
seq2  CACAATTACTGCCTTTACCTAATTAATACCTAAACCACAGAAAGACCCAA  448

seq1  CAAAGATAGAGATCTTCAGACCAATTTCCCTTATGAATATCGATGCAAAA  486
       ||||||||||| |||||| ||||||||||||||||||||||||| ||||
seq2  AAAAGATAGAGAACTTCAGTCCAATTTCCCTTATGAATATCGATGTAAAA  498

seq1  ATACTCAATAAAATTCTCGCTAACCGAACCCAAGAAAACATTAAAGCAAT  536
      ||||||||||||||||||| ||||| || ||||||| |||| ||| ||||
seq2  ATACTCAATAAAATTCTCGTTAACCAAATCCAAGAACACATCAAAACAAT  548

seq1  CATCCATCATGACCA  551
      |||||||| ||||||
seq2  CATCCATCCTGACCA  563