BAC Information

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BAC

Clone NameB6Ng01-028A13
ChromosomeX (Build37)
Map Location 94,110,991 - 94,265,770
singlet/doubletdoublet
Overlap geneLOC668234, EG668236, LOC668238
Upstream geneA130028J20Rik, Las1l, Msn, Psmb7-ps1, LOC668221, Vsig4, B230358A15Rik, Heph, Gpr165, LOC675824
Downstream genePgr15l, Eda2r, LOC668244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028A13.bB6Ng01-028A13.g
ACCDH858620DH858621
length1,1721,099
definitionDH858620|Mus musculus domesticus DNA, BAC clone: B6Ng01-028A13, 5' end.DH858621|Mus musculus domesticus DNA, BAC clone: B6Ng01-028A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,110,991 - 94,111,866)(94,264,673 - 94,265,770)
sequence
gaattctcccaacgaattaagttggggagggggcaactgaggccagtcca
cacacgctatgtgcatagcatccttatttgtaatagccagaatctggaaa
gaacccagatgtccatcaacacaggaataaatacagaaaatgtggtaaat
ttacacaatggagtactactcagctattaaaaacaatgaatttatgaaat
tcttagacaaatggatgtatgggaggatatcatctgagtgaggtaaccca
atatcaaaagaatacacattgtatgcactcactgataagtggatattagt
ccagaaccttagaatatccaagatgcaatttgcaaaacacatggaactca
agaagaaggaagaccaaagtgtggatacttcattccttcttagacagggg
aacaaaatgcccatggaaggagttacagaggcaaagtgtggagctgagat
tgaaagaatgaccatccagagactgccccacctggggatccatcccatat
ataaccaccaaaccctacactattgtggacaccaacaagagcttgttgtc
aggagcctgatatagtggtctcctaagaggtgctgccagtgcctgacaaa
tatagaagtggatgctccaagccatatattggatggaacacagggtctcc
aataaaggagctagagaaaatacccaaggagctgaaggggttcgcagcac
caaaggaggaacaacaatatgaactaaccagtacccccagagctccccgg
gactaaactaccaaccaaaggaaacacatggtgggactcatggctctagt
tgcatattttagattgcaagtatttataggaacggctttttattctcatt
tctattattattgacctatctgttatgtggactaatatggattcctttct
ttatattacctgcctatgaacttgttatttaaatctcttgactgcataga
agccagaagaggctataaaaatgtatacctaacttgcctctctataaaca
ttttaaatttttttcattgtccataggatgatatatttacaacagttttg
tggggaggttagccatacaacagtacttaaaagttcaaatcatcttcagg
ctttcttagacacttcctagtgagaagaaaatgccttctttctgctcaaa
gtaagtgattctagttgaaaaa
gaattccagacctagaaggcagccatttagataagataatctaacttgct
ttcaccctacaatggccttgaagtaattactttcactcaatctcctgcta
cctgcacatcacacaactctatcttactttcctaatccttgtttctctct
taggtaggctatagcatcattaactttgtagaaatcttctttaccctgcc
aggttttggtacagccaagacacagctatcgcttccattacgtgcccagg
atttgagttggatcttcagcttgcttctaaagctgcacttcttgttattc
ttcagaaatcttccagctaaggaatgcagcggctgcacgtgtggctcacg
gagagttagcaaaagctagccaatcaaggactgaagaaagagagcacaag
ctccagagctgtcaagctcttcccacagatcaaagccctcctggtaacag
atttataggatttctcacggaaggaggagtgggcggagctgcagactatt
ggttcagagaaggggcgcgcaggggggaggagagagaggctgagggctcc
gtggcttcttttgctgcccacggagtgccaattttgaatgctctaatatg
gcaggcagttttccaagccactgtttcccataatttatgttcaaatacag
gcaaatttctgcgtttatcttccactccaccacaacctaaacatctctct
aaggcagagccctgccccaacaaaaagatgaggtaaaagggttttctttg
ttgaacacaggggcgtacctggtaactaatcttatacagtggtgctgatt
ttaaaagctttaaaccaaaattaacacacacacacacacacacacaccca
tgctttctttttcagagagaaagcacacaaaaaggagaatatgtgcttca
agtggaaatattagtgggaaagccaagcagcccctataccatatgattcc
ccacattcttcatgatgcctcgagataattctctgaagtaacaacataaa
tgttaatggatttgtttcctcatgcgttgttacatttagaagttcaggtg
gatgggattatatgtgagaatggtcgtaatttctggccttttgtcagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_94110991_94111866
seq2: B6Ng01-028A13.b_350_1214

seq1  CTTAGAATATCCAAGATGCAATTTGCAAAACACATGGAACTCAAGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATATCCAAGATGCAATTTGCAAAACACATGGAACTCAAGAAGAA  50

seq1  GGAAGACCAAAGTGTGGATACTTCATTCCTTCTTAGACAGGGGAACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACCAAAGTGTGGATACTTCATTCCTTCTTAGACAGGGGAACAAAA  100

seq1  TGCCCATGGAAGGAGTTACAGAGGCAAAGTGTGGAGCTGAGATTGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATGGAAGGAGTTACAGAGGCAAAGTGTGGAGCTGAGATTGAAAGA  150

seq1  ATGACCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATATATAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATATATAACCA  200

seq1  CCAAACCCTACACTATTGTGGACACCAACAAGAGCTTGTTGTCAGGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCTACACTATTGTGGACACCAACAAGAGCTTGTTGTCAGGAGCC  250

seq1  TGATATAGTGGTCTCCTAAGAGGTGCTGCCAGTGCCTGACAAATATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGTGGTCTCCTAAGAGGTGCTGCCAGTGCCTGACAAATATAGAA  300

seq1  GTGGATGCTCCAAGCCATATATTGGATGGAACACAGGGTCTCCAATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCTCCAAGCCATATATTGGATGGAACACAGGGTCTCCAATAAAG  350

seq1  GAGCTAGAGAAAATACCCAAGGAGCTGAAGGGGTTCGCAGCACCAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGAGAAAATACCCAAGGAGCTGAAGGGGTTCGCAGCACCAAAGGA  400

seq1  GGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCCCCGGGACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCCCCGGGACTAAA  450

seq1  CTACCAACCAAAGGAAACACATGGTGGGACTCATGGCTCTAGTTGCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAACCAAAGGAAACACATGGTGGGACTCATGGCTCTAGTTGCATAT  500

seq1  TTTAGATTGCAAGTATTTATAGGAACGGCTTTTTATTCTCATTTCTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTGCAAGTATTTATAGGAACGGCTTTTTATTCTCATTTCTATTA  550

seq1  TTATTGACCTATCTGTTATGTGGACTAATATGGATTCCTTTCTTTATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGACCTATCTGTTATGTGGACTAATATGGATTCCTTTCTTTATATT  600

seq1  ACCTGCCTATGAACTTGTTATTTTAAATCTCTTGACTGCATAGAAGCCAG  650
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCTGCCTATGAACTTGTTA-TTTAAATCTCTTGACTGCATAGAAGCCAG  649

seq1  AAGAGGCTATAAAAATGTATACCTAACTTGCCTCTCTATAAAACATTTTA  700
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGAGGCTATAAAAATGTATACCTAACTTGCCTCTCTAT-AAACATTTTA  698

seq1  AATTTTTTTCATTGTCCATAGGATGATATATTTACAACAGTTTTGTTGGG  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATTTTTTTCATTGTCCATAGGATGATATATTTACAACAGTTTTGTGGGG  748

seq1  AGGTTAGCCCATACAACAGTACTTAAAAGTTTCAAATTCATCTTCAGGTC  800
      ||||||| ||||||||||||||||||||| |||||| ||||||||||| |
seq2  AGGTTAG-CCATACAACAGTACTTAAAAG-TTCAAA-TCATCTTCAGG-C  794

seq1  TTTCTTAAGACAACTTCCTAAGTGGAAAAAGAAATG-CTTCTTTCTGCTT  849
      |||||| |||| ||||||| ||| || ||  ||||| |||||||||||| 
seq2  TTTCTT-AGAC-ACTTCCT-AGT-GAGAAGAAAATGCCTTCTTTCTGCTC  840

seq1  ATAAGTAAGTGATTCTAAGTAGAAAAA  876
      | |||||||||||||| ||| ||||||
seq2  A-AAGTAAGTGATTCT-AGTTGAAAAA  865

seq1: chrX_94264673_94265770
seq2: B6Ng01-028A13.g_63_1161 (reverse)

seq1  TACTGACAGAAAAGCACAGAAATTACAGAACAATCTCACATA-AATCCAA  49
      |||||||  |||||  |||||||||| || || ||||||||| ||||| |
seq2  TACTGAC--AAAAGGCCAGAAATTAC-GACCATTCTCACATATAATCCCA  47

seq1  TACACCTGAACTTCTAAATGT-ACAACGCATGA-GAAACAAAT-CAATAA  96
      | ||||||||||||||||||| ||||||||||| ||||||||| || |||
seq2  TCCACCTGAACTTCTAAATGTAACAACGCATGAGGAAACAAATCCATTAA  97

seq1  CA-TTATGTTGTTACTTCAGAGAATTTATCTCGAGGCATCATG-AGAATG  144
      || ||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  CATTTATGTTGTTACTTCAGAGAA-TTATCTCGAGGCATCATGAAGAATG  146

seq1  TGGGGAATCATATGGTATAGGGGCTGCTTGGCTTTCCCACTAATATTTCC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATCATATGGTATAGGGGCTGCTTGGCTTTCCCACTAATATTTCC  196

seq1  ACTTGAAGCACATTATTCTCCTTTTTGTGTGCTTTCTCTCTGAAAAAGAA  244
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGCACA-TATTCTCCTTTTTGTGTGCTTTCTCTCTGAAAAAGAA  245

seq1  AGCATGGGTGTGTGTGTGTGTGTGTGTGTGTTAATTTTGGTTTAAAGCTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGGTGTGTGTGTGTGTGTGTGTGTGTTAATTTTGGTTTAAAGCTT  295

seq1  TTAAAATCAGCACCACTGTATAAGATTAGTTACCAGGTACGCCCCTGTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCAGCACCACTGTATAAGATTAGTTACCAGGTACGCCCCTGTGT  345

seq1  TCAACAAAGAAAACCCTTTTACCTCATCTTTTTGTTGGGGCAGGGCTCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAGAAAACCCTTTTACCTCATCTTTTTGTTGGGGCAGGGCTCTG  395

seq1  CCTTAGAGAGATGTTTAGGTTGTGGTGGAGTGGAAGATAAACGCAGAAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAGAGATGTTTAGGTTGTGGTGGAGTGGAAGATAAACGCAGAAAT  445

seq1  TTGCCTGTATTTGAACATAAATTATGGGAAACAGTGGCTTGGAAAACTGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTATTTGAACATAAATTATGGGAAACAGTGGCTTGGAAAACTGC  495

seq1  CTGCCATATTAGAGCATTCAAAATTGGCACTCCGTGGGCAGCAAAAGAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATATTAGAGCATTCAAAATTGGCACTCCGTGGGCAGCAAAAGAAG  545

seq1  CCACGGAGCCCTCAGCCTCTCTCTCCTCCCCCCTGCGCGCCCCTTCTCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGAGCCCTCAGCCTCTCTCTCCTCCCCCCTGCGCGCCCCTTCTCTG  595

seq1  AACCAATAGTCTGCAGCTCCGCCCACTCCTCCTTCCGTGAGAAATCCTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATAGTCTGCAGCTCCGCCCACTCCTCCTTCCGTGAGAAATCCTAT  645

seq1  AAATCTGTTACCAGGAGGGCTTTGATCTGTGGGAAGAGCTTGACAGCTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTTACCAGGAGGGCTTTGATCTGTGGGAAGAGCTTGACAGCTCT  695

seq1  GGAGCTTGTGCTCTCTTTCTTCAGTCCTTGATTGGCTAGCTTTTGCTAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGTGCTCTCTTTCTTCAGTCCTTGATTGGCTAGCTTTTGCTAAC  745

seq1  TCTCCGTGAGCCACACGTGCAGCCGCTGCATTCCTTAGCTGGAAGATTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGTGAGCCACACGTGCAGCCGCTGCATTCCTTAGCTGGAAGATTTC  795

seq1  TGAAGAATAACAAGAAGTGCAGCTTTAGAAGCAAGCTGAAGATCCAACTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATAACAAGAAGTGCAGCTTTAGAAGCAAGCTGAAGATCCAACTC  845

seq1  AAATCCTGGGCACGTAATGGAAGCGATAGCTGTGTCTTGGCTGTACCAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGGGCACGTAATGGAAGCGATAGCTGTGTCTTGGCTGTACCAAA  895

seq1  ACCTGGCAGGGTAAAGAAGATTTCTACAAAGTTAATGATGCTATAGCCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCAGGGTAAAGAAGATTTCTACAAAGTTAATGATGCTATAGCCTA  945

seq1  CCTAAGAGAGAAACAAGGATTAGGAAAGTAAGATAGAGTTGTGTGATGTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGAGAAACAAGGATTAGGAAAGTAAGATAGAGTTGTGTGATGTG  995

seq1  CAGGTAGCAGGAGATTGAGTGAAAGTAATTACTTCAAGGCCATTGTAGGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCAGGAGATTGAGTGAAAGTAATTACTTCAAGGCCATTGTAGGG  1045

seq1  TGAAAGCAAGTTAGATTATCTTATCTAAATGGCTGCCTTCTAGGTCTGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAAGTTAGATTATCTTATCTAAATGGCTGCCTTCTAGGTCTGGA  1095

seq1  ATTC  1098
      ||||
seq2  ATTC  1099