BAC Information

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BAC

Clone NameB6Ng01-028G01
ChromosomeX (Build37)19 (Build37)
Map Location 162,463,738 - 162,464,9017,920,136 - 7,920,891
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC627045, Glra2, LOC100040753
Downstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028G01.bB6Ng01-028G01.g
ACCDH858872DH858873
length1,1391,044
definitionDH858872|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G01, 5' end.DH858873|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(162,463,738 - 162,464,901)(7,920,136 - 7,920,891)
sequence
gaattcatatcactggtaggcaaaactaagggtaaatgagcaatatgacc
ttaagttattcactggctctggctcagtctatttttttcttcacatctgg
ggagactcaccttctcctatatggaataaaatgaaatgggatttgataga
gtgatgagaattttcaagtctttaatgacaccacagttcacatccggaaa
gcttatgctttgcttaatgtttggaacagtggttctcaaccttcctaatg
ctgcgaccctttaacacagtgtaataagtgtaacacataagtgtaatttt
gctactgttatgagtcataatgtaaatagctgatatgcaggatatgtgac
cccagtaaaaggatcattgtacctaaggggttgtgacccacaggctgaga
accactggtttaagagaaaagtttggtattcaataatttttattttagaa
gcttgtcattttcatttcttacctctgatctgcttaagacatatattcac
caacaatttactgccttttaaggctgtgcgagggctgacagtaaatctgg
acaagctctaatatgccttctgccaactgtaatttagttggttctttgag
agctcaagatttttattaccataaatattcttcagcttctaggtgtctcc
ctgctgacaacattgtccaattttgaatctcaacatcttcatttcaaaac
ctggaaaatgaaactgcaaaggtcaggtttcattgtaattgtggagtctg
ctgaaaaaagactagctttcttagcattgagccaccatccatactgcttg
cttcagagagcactcaggcttggggggaaaatgtcaccatgcaattcaag
tgaatgatggtacctggcacttggaccatcaggaatatttggtcatattt
cagtgtctgattttgtcaccacacaaagagaaagactttaaagagaactc
ttacttagcaaacatgatcacagcatggtttctacttcccaatgtctgtt
gcttctctcttttcacagagatgatcttactagaagtcaggaagggagag
cttccaggaaccacctgacgactttagctggaatacatgacaaagggggg
atagacctgtgaggatgggtcacactcacctcattagct
gaattcttaattcttaattagcaccacagcagccttataataggatgtta
aaactttgaggtgaagaaggatgattttatattaatgtttatttttgcca
aaaaatagctgtggacacatttaataaaaataactagaatatgtaactaa
tatttgattaccaccaattacaattgataccaatagattacagaagtttc
ttctactttctgttaaagcctttttggttctcaccagttaattggaatct
cacttgatagcacctaacaaaagattaggttctcctgtggcaagtttaag
gtgaggtcttagccaattaacatatcctgtaagcttttggaaataaaatt
ttgaagtaaatttgtaccaattttctagtatgactgaaaccctaattatt
aaataaggtattgcctctgaatcttatgaagcaacaactattctccagaa
ctttaaacttccctttagagacattagctaataaaatacttttcacttag
gaaacaatatatactgaaagatttaaaccttttgcttcttgtattgaagc
cgataataaaaattttttacatattgttaagctttgttagccatgcctag
gggcaaaaacctttaatggtcaccagttcactagaagtaaactctttaca
aatggaaaaacttaaacttttaaatctataataattttatatgaagtagg
caagttattttgaaatgcctttataaatttcacagcctaattgacctttt
ataaactttgaatttaaattttatttagaacaacatctggctaggtctgt
aataaggctctaagaagtgccacacaagccgcactgacactgctcccctc
tgagctctgcctcaacccaatgcaacttttttcaatctgaatactctgcc
agagtcttggttcaagatatctctatgttgaagtatccgtaaagacctgt
tttcttgtgtttgtcatgtgttagaaagactctagcctgagtctcaattt
agctaactttctgttacaagcaagctgcctgccctttagagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_162463738_162464901
seq2: B6Ng01-028G01.b_44_1182 (reverse)

seq1  AGCTAAAAATTTTGAGGTGAGTGGGTGGCCCCATCCCTCAACAGGTTCTA  50
      ||||||      |||||||||||    | ||||| |||| ||||| ||||
seq2  AGCTAA------TGAGGTGAGTG---TGACCCAT-CCTC-ACAGG-TCTA  38

seq1  TCTCCCCCTTTGTCATGTATTTCAGCTAAAGTCGTCCAGGTTGGGTCCTG  100
      || |||||||||||||||||| ||||||||||||| |||| ||| |||||
seq2  TC-CCCCCTTTGTCATGTATTCCAGCTAAAGTCGT-CAGG-TGGTTCCTG  85

seq1  GGAGCCTCTCCCTTCCTTGACTTTCTAGTAAGAACCATCTCTTGTGAAAA  150
      | || ||||||||||| |||| |||||||||| | |||||| ||||||||
seq2  GAAG-CTCTCCCTTCC-TGAC-TTCTAGTAAG-ATCATCTC-TGTGAAAA  130

seq1  GAGGAGAAGCAACAGACATTGGGGAAGTAGAAACCATGCTGTGATCATGT  200
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GA-GAGAAGCAACAGACATT-GGGAAGTAGAAACCATGCTGTGATCATGT  178

seq1  TTGCTAAGTAAGAGTTCTCTTTAAAGTCTTTTCTTCTTTGTGTGGTGACA  250
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  TTGCTAAGTAAGAGTTCTCTTTAAAGTCTTT--CTCTTTGTGTGGTGACA  226

seq1  AAATCAGACACTGAAATATGACCAAATATTTCCTGATGGTCCAAGTGCCA  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAATCAGACACTGAAATATGACCAAATA-TTCCTGATGGTCCAAGTGCCA  275

seq1  GGTACCATCATTCACTTGAATTGCATGGTGACATTTTCCCCCCAAGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCATCATTCACTTGAATTGCATGGTGACATTTTCCCCCCAAGCCTG  325

seq1  AGTGCTCTCTGAAGCAAGCAGTATGGATGGTGGCTCAATGCTAAGAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTCTGAAGCAAGCAGTATGGATGGTGGCTCAATGCTAAGAAAGC  375

seq1  TAGTCTTTTTTCAGCAGACTCCACAATTACAATGAAACCTGACCTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTTTTCAGCAGACTCCACAATTACAATGAAACCTGACCTTTGCA  425

seq1  GTTTCATTTTCCAGGTTTTGAAATGAAGATGTTGAGATTCAAAATTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTTCCAGGTTTTGAAATGAAGATGTTGAGATTCAAAATTGGAC  475

seq1  AATGTTGTCAGCAGGGAGACACCTAGAAGCTGAAGAATATTTATGGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTCAGCAGGGAGACACCTAGAAGCTGAAGAATATTTATGGTAAT  525

seq1  AAAAATCTTGAGCTCTCAAAGAACCAACTAAATTACAGTTGGCAGAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTGAGCTCTCAAAGAACCAACTAAATTACAGTTGGCAGAAGGC  575

seq1  ATATTAGAGCTTGTCCAGATTTACTGTCAGCCCTCGCACAGCCTTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAGCTTGTCCAGATTTACTGTCAGCCCTCGCACAGCCTTAAAAG  625

seq1  GCAGTAAATTGTTGGTGAATATATGTCTTAAGCAGATCAGAGGTAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAATTGTTGGTGAATATATGTCTTAAGCAGATCAGAGGTAAGAAA  675

seq1  TGAAAATGACAAGCTTCTAAAATAAAAATTATTGAATACCAAACTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGACAAGCTTCTAAAATAAAAATTATTGAATACCAAACTTTTCT  725

seq1  CTTAAACCAGTGGTTCTCAGCCTGTGGGTCACAACCCCTTAGGTACAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACCAGTGGTTCTCAGCCTGTGGGTCACAACCCCTTAGGTACAATG  775

seq1  ATCCTTTTACTGGGGTCACATATCCTGCATATCAGCTATTTACATTATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTACTGGGGTCACATATCCTGCATATCAGCTATTTACATTATGA  825

seq1  CTCATAACAGTAGCAAAATTACACTTATGTGTTACACTTATTACACTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAACAGTAGCAAAATTACACTTATGTGTTACACTTATTACACTGTG  875

seq1  TTAAAGGGTCGCAGCATTAGGAAGGTTGAGAACCACTGTTCCAAACATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGGTCGCAGCATTAGGAAGGTTGAGAACCACTGTTCCAAACATTA  925

seq1  AGCAAAGCATAAGCTTTCCGGATGTGAACTGTGGTGTCATTAAAGACTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCATAAGCTTTCCGGATGTGAACTGTGGTGTCATTAAAGACTTG  975

seq1  AAAATTCTCATCACTCTATCAAATCCCATTTCATTTTATTCCATATAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTCATCACTCTATCAAATCCCATTTCATTTTATTCCATATAGGA  1025

seq1  GAAGGTGAGTCTCCCCAGATGTGAAGAAAAAAATAGACTGAGCCAGAGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAGTCTCCCCAGATGTGAAGAAAAAAATAGACTGAGCCAGAGCC  1075

seq1  AGTGAATAACTTAAGGTCATATTGCTCATTTACCCTTAGTTTTGCCTACC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATAACTTAAGGTCATATTGCTCATTTACCCTTAGTTTTGCCTACC  1125

seq1  AGTGATATGAATTC  1164
      ||||||||||||||
seq2  AGTGATATGAATTC  1139

seq1: chr19_7920136_7920891
seq2: B6Ng01-028G01.g_368_1106

seq1  GTCTTAGCCAATTAACATATCCTGTAAGCTTTTGGAAATAAAAGTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCTTAGCCAATTAACATATCCTGTAAGCTTTTGGAAATAAAATTTTGAA  50

seq1  GTAAATTTGTACCAATTTTCCAGTATAACCGAAACCCTAATTATTAAA-A  99
      |||||||||||||||||||| ||||| || |||||||||||||||||| |
seq2  GTAAATTTGTACCAATTTTCTAGTATGACTGAAACCCTAATTATTAAATA  100

seq1  ACATATTGCCTCTGAATCTTATGAAGCAACAACTATTCTCCAGAACTTTA  149
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTGCCTCTGAATCTTATGAAGCAACAACTATTCTCCAGAACTTTA  150

seq1  AACTTCCCTTTAGAGACATTAGCTAATAAAATACTTTTCACTTAGGAAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCTTTAGAGACATTAGCTAATAAAATACTTTTCACTTAGGAAAC  200

seq1  AATATATACTGAAAGATTTAAACCTTTTGCTTCTTGTATTGAAGCTGATA  249
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATATATACTGAAAGATTTAAACCTTTTGCTTCTTGTATTGAAGCCGATA  250

seq1  ATAAAAATTTCTTACATATTGTTAAGCTATGTTAGCCATACCTAGGGGCA  299
      |||||||||| ||||||||||||||||| |||||||||| ||||||||||
seq2  ATAAAAATTTTTTACATATTGTTAAGCTTTGTTAGCCATGCCTAGGGGCA  300

seq1  AAAACCTTTAATGGTCACCAGTTCACTAGAAGTAAACTCTTTATAAATGG  349
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAACCTTTAATGGTCACCAGTTCACTAGAAGTAAACTCTTTACAAATGG  350

seq1  AAAAAATTAAACTTTTAAATCTATAATAATTTTATATGAAGTAGGCAAGT  399
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTAAACTTTTAAATCTATAATAATTTTATATGAAGTAGGCAAGT  400

seq1  TATTTTGAAATGCCTTTATAAGTTTTATAGCCTGATTGACCTTTTATAAT  449
      ||||||||||||||||||||| ||| | ||||| ||||||||||||||| 
seq2  TATTTTGAAATGCCTTTATAAATTTCACAGCCTAATTGACCTTTTATAA-  449

seq1  TCTTTTGAATTTAAATTTTATTTAGAACAACATCTGGCTAGGTCTGTAAT  499
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACTTTGAATTTAAATTTTATTTAGAACAACATCTGGCTAGGTCTGTAAT  498

seq1  AAGGCTCTAAGAAGTGCCACACAAGCCGAGCTGAGGCTGCTCCCCTCCGA  549
      ||||||||||||||||||||||||||||  ||||  ||||||||||| ||
seq2  AAGGCTCTAAGAAGTGCCACACAAGCCGCACTGACACTGCTCCCCTCTGA  548

seq1  GCTCAGCCTCAACCCAAATGCAAACTTTTTTCAATCTAAACACTCTGCCA  599
      |||| |||||||||| ||||| ||||||||||||||| || |||||||||
seq2  GCTCTGCCTCAACCC-AATGC-AACTTTTTTCAATCTGAATACTCTGCCA  596

seq1  GAGTCTTGGCTCAAAGATTACCCCTATGTTGAAGTATCCTTAAAGACTTG  649
      ||||||||| || |||| || | |||||||||||||||| ||||||| ||
seq2  GAGTCTTGGTTC-AAGA-TATCTCTATGTTGAAGTATCCGTAAAGACCTG  644

seq1  TTTTCTTGTGTTTGTTCATGTTGTTTAGAAAGACTCTAACCTTGAGTTCT  699
      |||||||||||||| ||||||   |||||||||||||| || |||| |||
seq2  TTTTCTTGTGTTTG-TCATGT--GTTAGAAAGACTCTAGCC-TGAG-TCT  689

seq1  CAAATTTAAGCTAACTTTCTGTTACAAGCAAAAGGCTGCCTGCCCCTTTA  749
      |||  || |||||||||||||||||||||||   |||||||||||  || 
seq2  CAA--TTTAGCTAACTTTCTGTTACAAGCAA---GCTGCCTGCCC--TTT  732

seq1  AGAGCTC  756
      |||||||
seq2  AGAGCTC  739