BAC Information

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BAC

Clone NameB6Ng01-029A18
ChromosomeX (Build37)
Map Location 24,788,711 - 24,837,559
singlet/doubletdoublet
Overlap geneLOC100038968
Upstream geneLOC100043957, LOC100043206, LOC669000, LOC629204, EG546272, LOC100043216, EG546282, LOC100040417, LOC100040428, LOC100040433, Xmr
Downstream geneLOC100038977, LOC100038997, LOC664810, EG382275, LOC100039030, LOC100039065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029A18.bB6Ng01-029A18.g
ACCDH859356DH859357
length1,1221,253
definitionDH859356|Mus musculus domesticus DNA, BAC clone: B6Ng01-029A18, 5' end.DH859357|Mus musculus domesticus DNA, BAC clone: B6Ng01-029A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,788,711 - 24,789,478)(24,836,276 - 24,837,559)
sequence
gaattctgggagtctgtctttagactcctcatttacatggatgatcactc
caccttgaaatttcatccagggttcaaggtttaaaaattgccttcaattg
gagtatttatttattttttatctttagtccctatctctttccagaattga
ctcataatggtggcttcctcaatgccttcccaggcaggaatggatctcct
gttcatttcaaattgaatacttctcaaactattaaccaatgaaataaaaa
atagttaatatggtcatcatctcagatcttacttggaaactatgtgatga
ctacagtcattggtacagtaatggagagatgatctaaaatagtttggtga
tattcttccacaggaatattctgccagggctgttgagaaaggttgtttcc
atccactgttgttactaaatttgtactacgtttaggattgtaagaactga
tttgccagtttgagttggctttcgaatattaacaagagagtccagatgac
accagtaagtaagctttctctctcctttcaactgtacctgaggctgacat
agtgtgcttccttttgtagaaactagtaatcctctcttcatctttcagca
aatgtctgcctcttgaaaatttataatctggtctaccagaaaatacctag
tggttttcattgatatagtatgtgatcatacttctctgctttacaattca
gtaggactagaacagaaccaaggatagatagataatgaaacttaatttag
tttcatgtgcccaacacaaggctagtttctccattcctacttgatactta
gttatactaggttaattataaagttagttatgatactaaccactgatttt
tcttgttcttcattgaatttctgtatatccatatcaaacttctgctcaca
caatttgttgttgatcttctttctgtaaagcacagtaataaagcagtcac
atttcataccaatatgaaaagacactcaaacaaattaaattgaccatttc
atactataaagaaaacagcagtaaatattatccattggaaatcattatag
tttttttccctgaagattatcagagagtcttcttttatgtttagctttca
aaatcgagtttaatacatatgt
gaattcagtctgttctcatgcagcaaaacagatcattgacatcaataggg
tcttccaaggaatagaaactatggataccatcatgtttcctgtgttcagc
atatagcagtgacagcaacataggttcaggttataagtaacatcagaggc
ttgaaacaagtttccattaggaaaacacactactaacctcattgggatct
tgggcagaagttctgaccatgcatttcataattgatgcttttgtccacag
tgatcatagacattaccaagatcttcagagtcagcacatgtggttacaaa
tggtaaaatgggagagtaaaatcaacatatttatcttagcaaataggaca
attggtatcacaatctggtccaaagtgtcagtaggtatcattaacatcct
ggttgcctctggcatcaaagttcttggatataccatggcgtctattgcca
ggaagaatcagaacatcgtgattgtttcagagagcagggagaaccatgaa
cagaaatcacatctatagtgtcagaatggagcattgacttcaaaattatc
acagctaagagtatatatatctcataaaggacattcccacaggtgagaga
agcatgcatcactgacatcagtatagattccaatgacagttggaatcatt
catattaatgtggccctaaatgggagaaaggatcaatgacaacattgttg
cttgtggtatcaaagagtatagacagatcgatttgtcttccaaagatgta
tatattagtgaacgcatggtccagagcaggggctacatgcatacatcagg
gatatcaacagaattttctgtggccaataggatctcagatatcaatgtga
tctccagtgcacctcagatcctgtacctcaatatgataacagtgtcagta
tggaccataaaatatgggaataaccttaaacagcagcagagatcatcctt
atgatcagggtttcatcaatttcagtaatagaaacatggaatccatcatg
attgctggtcaaacattcattaccaaatcaaatagtttcaggtttcagta
catccaggtgtcaaagtatcttcagtagcagcaacagcacttacttcatt
atgactttaggcagcaatagttgatcatgaccttacaatagaatcttttg
actagactgacagacgaattcaattcggacctctcagccggcatctggaa
ctcagggttaccgaggtctttacaagagaagtcaatacttttaactgtgg
cat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_24788711_24789478
seq2: B6Ng01-029A18.b_417_1164

seq1  CAGGGCTGTTGAGAAAGGTTGTTTCCATCCACTGTTGTTACTAAATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGTTGAGAAAGGTTGTTTCCATCCACTGTTGTTACTAAATTTGT  50

seq1  ACTACGTTTAGGATTGTAAGAACTGATTTGCCAGTTTGAGTTGGCTTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGTTTAGGATTGTAAGAACTGATTTGCCAGTTTGAGTTGGCTTTCG  100

seq1  AATATTAACAAGAGAGTCCAGATGACACCAGTAAGTAAGCTTTCTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAACAAGAGAGTCCAGATGACACCAGTAAGTAAGCTTTCTCTCTC  150

seq1  CTTTCAACTGTACCTGAGGCTGACATAGTGTGCTTCCTTTTGTAGAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAACTGTACCTGAGGCTGACATAGTGTGCTTCCTTTTGTAGAAACT  200

seq1  AGTAATCCTCTCTTCATCTTTCAGCAAATGTCTGCCTCTTGAAAATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCCTCTCTTCATCTTTCAGCAAATGTCTGCCTCTTGAAAATTTAT  250

seq1  AATCTGGTCTACCAGAAAATACCTAGTGGTTTTCATTGATATAGTATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGTCTACCAGAAAATACCTAGTGGTTTTCATTGATATAGTATGTG  300

seq1  ATCATACTTCTCTGCTTTACAATTCAGTAGGACTAGAACAGAACCAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTTCTCTGCTTTACAATTCAGTAGGACTAGAACAGAACCAAGGA  350

seq1  TAGATAGATAATGAAACTTAATTTAGTTTCATGTGCCCAACACAAGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAATGAAACTTAATTTAGTTTCATGTGCCCAACACAAGGCTA  400

seq1  GTTTCTCCATTCCTACTTGATACTTAGTTATACTAGGTTAATTATAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCATTCCTACTTGATACTTAGTTATACTAGGTTAATTATAAAGT  450

seq1  TAGTTATGATACTAACCACTGATTTTTCTTGTTCTTCATTGAATTTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGATACTAACCACTGATTTTTCTTGTTCTTCATTGAATTTCTGT  500

seq1  ATATCCATATCAAACTTCTGCTCACACAATTTGTTGTTGATCTTCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATATCAAACTTCTGCTCACACAATTTGTTGTTGATCTTCTTTCT  550

seq1  GTAAAGCACAGTAATAAAAGCAGTCACATTTCATACCAATATGAAAAAGA  600
      ||||||||||||||| |||||||||||||||||||||||||||||||   
seq2  GTAAAGCACAGTAAT-AAAGCAGTCACATTTCATACCAATATGAAAA--G  597

seq1  ACACTCAAAACAAATTAAATTGACCATTTCATACTATAAAAAGAAAAACA  650
      |||||| |||||||||||||||||||||||||||||||||    ||||||
seq2  ACACTC-AAACAAATTAAATTGACCATTTCATACTATAAA---GAAAACA  643

seq1  GCAGTAAAATATTATCCAATTGGAAATCATTATAGTTTTTTTTCCCTGAA  700
      ||||| ||||||||||| ||||||||||||||||| |||||||||||| |
seq2  GCAGT-AAATATTATCC-ATTGGAAATCATTATAG-TTTTTTTCCCTG-A  689

seq1  AGATTATCAGAGAAGTCTTCTTTTATGTTTTAGCTTTTCAAAAATTAAAG  750
      |||||||||||| |||||||||||||| |||||| ||||||||  |  ||
seq2  AGATTATCAGAG-AGTCTTCTTTTATG-TTTAGC-TTTCAAAA--TCGAG  734

seq1  AAGTTTTAATACATATGT  768
          ||||||||||||||
seq2  ----TTTAATACATATGT  748

seq1: chrX_24836276_24837559
seq2: B6Ng01-029A18.g_65_1317 (reverse)

seq1  ATGCCA-AGTTAAAAGTATTGACATTACTTATCGATAAAGCATCT-GGTA  48
      |||||| |||||||||||||||| |  |||     ||||| | || ||||
seq2  ATGCCACAGTTAAAAGTATTGACTTCTCTT----GTAAAG-ACCTCGGTA  45

seq1  AACATGTTGAGATTCATAGATAGTCTTGACTTTGAAGAGTCTGAATTTGA  98
      | |    |||| | |  |||| | |  | |  |||   ||| ||| ||||
seq2  ACC---CTGAGTTCC--AGAT-GCC--GGC--TGAGAGGTCCGAA-TTGA  84

seq1  ATTCTGTCCTGTCTATGATCCTTTAGTC-AAAGAGTCTATTGTAAAGTTC  147
      ||||      |||| | |   | ||||| ||||| |||||||| ||| ||
seq2  ATTC------GTCTGTCA--GTCTAGTCAAAAGATTCTATTGT-AAGGTC  125

seq1  ATGATC-ACTATTGCTGCCTAATGTCATAATGAGTTAAGTGCTGTGTGCT  196
      |||||| ||||||||||||||| ||||||||||  |||||||||| ||||
seq2  ATGATCAACTATTGCTGCCTAAAGTCATAATGAAGTAAGTGCTGT-TGCT  174

seq1  GCTACTGGAGATACTTTTGACACCTGGGATGGTACTTGAAACCTGAAACT  246
      ||||||| |||||| |||||||||| |||| |||| ||||||||||||||
seq2  GCTACTGAAGATAC-TTTGACACCT-GGAT-GTAC-TGAAACCTGAAACT  220

seq1  ATGTTGATGTGGGTAATGAATGTTTTGACCAGCAATCATGATGGATTCCA  296
      || ||||| | ||||||||||| |||||||||||||||||||||||||||
seq2  AT-TTGAT-TTGGTAATGAATG-TTTGACCAGCAATCATGATGGATTCCA  267

seq1  TTGTTTCTATTACTGAAATTGATGGAAACCCTGATCATAAGGATGATCTC  346
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  -TGTTTCTATTACTGAAATTGAT-GAAACCCTGATCATAAGGATGATCTC  315

seq1  TGCTGCTGTTTAAGGTAATT-CCATATTTTATGGTCCATACTGACACTGG  395
      |||||||||||||||| ||| ||||||||||||||||||||||||||| |
seq2  TGCTGCTGTTTAAGGTTATTCCCATATTTTATGGTCCATACTGACACT-G  364

seq1  TTATCATATTGAGGTACAGGATCTGAGGTGCACTGGAGATCACATTGATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATATTGAGGTACAGGATCTGAGGTGCACTGGAGATCACATTGATA  414

seq1  TCTGAGATCCTATTGGCCACAGAAAATTCTGTTGATATCCCTGATGTATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATCCTATTGGCCACAGAAAATTCTGTTGATATCCCTGATGTATG  464

seq1  CATGTAGCCCCTGCTCTGGACCATGCGTTCACTAATATATACATCTTTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCCCCTGCTCTGGACCATGCGTTCACTAATATATACATCTTTGG  514

seq1  AAGACAAATCGATCTGTCTATACTCTTTGATACCACAAGCAACAATGTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAATCGATCTGTCTATACTCTTTGATACCACAAGCAACAATGTTG  564

seq1  TCATTGATCCTTTCTCCCATTTAGGGCCACATTAATATGAATGATTCCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATCCTTTCTCCCATTTAGGGCCACATTAATATGAATGATTCCAA  614

seq1  CTGTCATTGGAATCTATACTGATGTCAGTGATGCATGCTTCTCTCACCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTGGAATCTATACTGATGTCAGTGATGCATGCTTCTCTCACCTG  664

seq1  TGGGAATGTCCTTTATGAGATATATATACTCTTAGCTGTGATAATTTTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGTCCTTTATGAGATATATATACTCTTAGCTGTGATAATTTTGA  714

seq1  AGTCAATGCTCCATTCTGACACTATAGATGTGATTTCTGTTCATGGTTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGCTCCATTCTGACACTATAGATGTGATTTCTGTTCATGGTTCT  764

seq1  CCCTGCTCTCTGAAACAATCACGATGTTCTGATTCTTCCTGGCAATAGAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCTCTGAAACAATCACGATGTTCTGATTCTTCCTGGCAATAGAC  814

seq1  GCCATGGTATATCCAAGAACTTTGATGCCAGAGGCAACCAGGATGTTAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTATATCCAAGAACTTTGATGCCAGAGGCAACCAGGATGTTAAT  864

seq1  GATACCTACTGACACTTTGGACCAGATTGTGATACCAATTGTCCTATTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTACTGACACTTTGGACCAGATTGTGATACCAATTGTCCTATTTG  914

seq1  CTAAGATAAATATGTTGATTTTACTCTCCCATTTTACCATTTGTAACCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATAAATATGTTGATTTTACTCTCCCATTTTACCATTTGTAACCAC  964

seq1  ATGTGCTGACTCTGAAGATCTTGGTAATGTCTATGATCACTGTGGACAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGACTCTGAAGATCTTGGTAATGTCTATGATCACTGTGGACAAA  1014

seq1  AGCATCAATTATGAAATGCATGGTCAGAACTTCTGCCCAAGATCCCAATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAATTATGAAATGCATGGTCAGAACTTCTGCCCAAGATCCCAATG  1064

seq1  AGGTTAGTAGTGTGTTTTCCTAATGGAAACTTGTTTCAAGCCTCTGATGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGTAGTGTGTTTTCCTAATGGAAACTTGTTTCAAGCCTCTGATGT  1114

seq1  TACTTATAACCTGAACCTATGTTGCTGTCACTGCTATATGCTGAACACAG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATAACCTGAACCTATGTTGCTGTCACTGCTATATGCTGAACACAG  1164

seq1  GAAACATGATGGTATCCATAGTTTCTATTCCTTGGAAGACCCTATTGATG  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGATGGTATCCATAGTTTCTATTCCTTGGAAGACCCTATTGATG  1214

seq1  TCAATGATCTGTTTTGCTGCATGAGAACAGACTGAATTC  1284
      |||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATCTGTTTTGCTGCATGAGAACAGACTGAATTC  1253