BAC Information

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BAC

Clone NameB6Ng01-029P05
ChromosomeX (Build37)
Map Location 157,779,369 - 157,972,162
singlet/doubletdoublet
Overlap genePrkaca-ps1
Upstream geneGpr64, Phka2, Ppef1, Rs1, Gja6, Scml2, LOC414364
Downstream geneRai2, Gm47, Nhs, Reps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029P05.bB6Ng01-029P05.g
ACCDH860000DH860001
length6341,056
definitionDH860000|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P05, 5' end.DH860001|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,971,527 - 157,972,162)(157,779,369 - 157,780,435)
sequence
gaattctttaaattacttgaaaagtgtctgacaggttatatcctgatttg
cattgggaccacctaaatgagaatgaaattttcgaactttggtttcggga
gcttgaaacattacaatgatgctataaacaggtaaatatcatttatttta
aagacactcatataacacctcatccccttccagatagccttacaaaagga
ggtcaatttgtagccaagaacaggtgattagacttctctacaaagaaatt
cctgccaaaaccattgggaaaatcagtggagaagatcataacataacaaa
ctacttgagcaacaatgaaagtggggatgaaaacaagaaggtatgtatgt
ttgttaaagagaaggggtacacacatacacacagatacatacacacatag
agattctaaatataaaaatttcaaaaggcactagaaatttacttaaaata
attaataccaacagagacctgaattcttttgtgtgtgtatggggggagat
atttagtgtttatattttaggagtccagaaatgagatgttgaaatagaaa
ttcccatatttaaattccctgcctgggaccttgagtttgttattgtcatt
atggatttgaaattaagatgctttgtttctaact
gaattctcccaagtcactccattcattagattttctttttcttttctttt
tttttttttaacaactgagtaccattccatattatagttcaagctccatt
ctcttgttctttctctctccaaactacctctatccatcccctgcccctct
ccctctcttaattgaagactatttggagctattatattagaaataaataa
cgtgactgagatggttcagtgagtaaagggattgctgcacaaagcatgag
ggctagggctggaatcaaatcctcaccactcctataaatggcagatgggc
atggtagcttgcctgtattcccagaactcaagaggtagagatggtggaac
ccaaatcacagagctatggattcaagtgagagatttttgcctccttctct
cactaagatggagggcaacaaggatgacagtcaatgtcaacctctggcct
ccatatgcatgtgcagatacatatatccataaccatgcccccccacacat
aatgcactcagactacaaaaaggaagtaaagttgctatgaatgctaatat
tggattttatgcaaacataagttgtcttttattagaattactgcacaaga
atccaattgcaggttcctatgataattttatatttcaatttataaaatac
taacaagccatcttggtgtctgaagaactgagtgtaggccattctgtaag
ggtaagtcatctagtgcaaattttcagtttttcttttttgagaatgatct
tttcctccttcattcatcaaggatggtacagttaatacaaaatagtgaat
gagattctttttcagaatttgacaatgttttacctattaaaatattccaa
acaggagccacacaagaaataatacctctggttgtgagtttcccagctcc
cgaggagcatgttactgggaatgctatgatttagtgcacattattgacac
gtaatgatttttttgcaatatcagtgcagtcaaatccacagtattttttg
aacaaggtatgatttatatcttcctccattgtttgattagggggctggtt
aggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_157971527_157972162
seq2: B6Ng01-029P05.b_45_678 (reverse)

seq1  AGTTGAGAAACAAAGCATCTTAATTTCAAATCCATAATGCCAATAACAAA  50
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTT-AGAAACAAAGCATCTTAATTTCAAATCCATAATGACAATAACAAA  49

seq1  CTCAAGGTCCCAGGCACGGAATTTAAATATGGGAATTTCTTATTTTAACA  100
      |||||||||||||||| |||||||||||||||||||||| ||||| ||||
seq2  CTCAAGGTCCCAGGCAGGGAATTTAAATATGGGAATTTC-TATTTCAACA  98

seq1  TTTCATTTTTGGAGTCCTAAAATATAAACACTAAATATCTCCCCCCATAC  150
      | |||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCTGGACTCCTAAAATATAAACACTAAATATCTCCCCCCATAC  148

seq1  ACACACAAAAGAATTCAGGTCTCTGTTGGTATTAATTATTTTAAGTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAAAGAATTCAGGTCTCTGTTGGTATTAATTATTTTAAGTAAAT  198

seq1  TTCTAGTGCCTTTTGAAATTTTTATATTTAGAATCTCTATGTGTGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGCCTTTTGAAATTTTTATATTTAGAATCTCTATGTGTGTATGT  248

seq1  ATCTGTGTGTATGTGTGTACCCCTTCTCTTTAACAAACATACATACCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTGTATGTGTGTACCCCTTCTCTTTAACAAACATACATACCTTC  298

seq1  TTGTTTTCATCCCCACTTTCATTGTTGCTCAAGTAGTTTGTTATGTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCATCCCCACTTTCATTGTTGCTCAAGTAGTTTGTTATGTTATG  348

seq1  ATCTTCTCCACTGATTTTCCCAATGGTTTTGGCAGGAATTTCTTTGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCCACTGATTTTCCCAATGGTTTTGGCAGGAATTTCTTTGTAGA  398

seq1  GAAGTCTAATCACCTGTTCTTGGCTACAAATTGACCTCCTTTTGTAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTAATCACCTGTTCTTGGCTACAAATTGACCTCCTTTTGTAAGGC  448

seq1  TATCTGGAAGGGGATGAGGTGTTATATGAGTGTCTTTAAAATAAATGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGAAGGGGATGAGGTGTTATATGAGTGTCTTTAAAATAAATGATA  498

seq1  TTTACCTGTTTATAGCATCATTGTAATGTTTCAAGCTCCCGAAACCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGTTTATAGCATCATTGTAATGTTTCAAGCTCCCGAAACCAAAG  548

seq1  TTCGAAAATTTCATTCTCATTTAGGTGGTCCCAATGCAAATCAGGATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAAATTTCATTCTCATTTAGGTGGTCCCAATGCAAATCAGGATATA  598

seq1  ACCTGTCAGACACTTTTCAAGTAATTTAAAGAATTC  636
      ||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCAGACACTTTTCAAGTAATTTAAAGAATTC  634

seq1: chrX_157779369_157780435
seq2: B6Ng01-029P05.g_65_1120

seq1  GAATTCTCCCAAGTCACTCCATTCATTAGATTTTCTTTTTCTTTTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAAGTCACTCCATTCATTAGATTTTCTTTTTCTTTTCTTTT  50

seq1  TTTTTTTTTAACAACTGAGTACCATTCCATATTATAGTTCAAGCTCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAACAACTGAGTACCATTCCATATTATAGTTCAAGCTCCATT  100

seq1  CTCTTGTTCTTTCTCTCTCCAAACTACCTCTATCCATCCCCTGCCCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTCTTTCTCTCTCCAAACTACCTCTATCCATCCCCTGCCCCTCT  150

seq1  CCCTCTCTTAATTGAAGACTATTTGGAGCTATTATATTAGAAATAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTTAATTGAAGACTATTTGGAGCTATTATATTAGAAATAAATAA  200

seq1  CGTGACTGAGATGGTTCAGTGAGTAAAGGGATTGCTGCACAAAGCATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTGAGATGGTTCAGTGAGTAAAGGGATTGCTGCACAAAGCATGAG  250

seq1  GGCTAGGGCTGGAATCAAATCCTCACCACTCCTATAAATGGCAGATGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGGCTGGAATCAAATCCTCACCACTCCTATAAATGGCAGATGGGC  300

seq1  ATGGTAGCTTGCCTGTATTCCCAGAACTCAAGAGGTAGAGATGGTGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGCTTGCCTGTATTCCCAGAACTCAAGAGGTAGAGATGGTGGAAC  350

seq1  CCAAATCACAGAGCTATGGATTCAAGTGAGAGATTTTTGCCTCCTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCACAGAGCTATGGATTCAAGTGAGAGATTTTTGCCTCCTTCTCT  400

seq1  CACTAAGATGGAGGGCAACAAGGATGACAGTCAATGTCAACCTCTGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGATGGAGGGCAACAAGGATGACAGTCAATGTCAACCTCTGGCCT  450

seq1  CCATATGCATGTGCAGATACATATATCCATAACCATGCCCCCCCACACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCATGTGCAGATACATATATCCATAACCATGCCCCCCCACACAT  500

seq1  AATGCACTCAGACTACAAAAAGGAAGTAAAGTTGCTATGAATGCTAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTCAGACTACAAAAAGGAAGTAAAGTTGCTATGAATGCTAATAT  550

seq1  TGGATTTTATGCAAACATAAGTTGTCTTTTATTAGAATTACTGCACAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTATGCAAACATAAGTTGTCTTTTATTAGAATTACTGCACAAGA  600

seq1  ATCCAATTGCAGGTTCCTATGATAATTTTATATTTCAATTTATAAAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTGCAGGTTCCTATGATAATTTTATATTTCAATTTATAAAATAC  650

seq1  TAACAAGCCATCTTGGTGTCTGAAGAACTGAGTGTAGGCCATTCTGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGCCATCTTGGTGTCTGAAGAACTGAGTGTAGGCCATTCTGTAAG  700

seq1  GGTAAGTCATCTAGTGCAAATTTTCAGTTTTTCTTTTTTGAGAATGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTCATCTAGTGCAAATTTTCAGTTTTTCTTTTTTGAGAATGATCT  750

seq1  TTTCCTCCTTCATTCATCAAGGATGGTACAGTTAATACAAAATAGTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTTCATTCATCAAGGATGGTACAGTTAATACAAAATAGTGAAT  800

seq1  GAGATTCTTTTTCAGAATTTGACAATGTTTTACCTATTAAAATATTCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTTTTTCAGAATTTGACAATGTTTTACCTATTAAAATATTCCAA  850

seq1  ACAGGAGCCACACAAGAAATAATACCTCTGGTTGTGAGTTTCCCAGCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGCCACACAAGAAATAATACCTCTGGTTGTGAGTTTCCCAGCTCC  900

seq1  CGAGGAGCATGTTACTGGGAATGCTAATGATTTAGTGCACATTATTGACC  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  CGAGGAGCATGTTACTGGGAATGCT-ATGATTTAGTGCACATTATTGAC-  948

seq1  AAGGTAATGATTTTTTTGCAATATCAGTGCAGTCATATCCAACAAGTATT  1000
       | |||||||||||||||||||||||||||||||| |||||   ||||||
seq2  -ACGTAATGATTTTTTTGCAATATCAGTGCAGTCAAATCCA--CAGTATT  995

seq1  TTTTGAACAAGGTAATGATTTAATATCTTCCTCCATTGTTCTGATTTAGT  1050
      ||||||||||||| ||||||| |||||||||||||||||| ||| |||| 
seq2  TTTTGAACAAGGT-ATGATTT-ATATCTTCCTCCATTGTT-TGA-TTAGG  1041

seq1  GGGCTGGTTTTAGGTGA  1067
      |||||||  ||||||||
seq2  GGGCTGG--TTAGGTGA  1056