BAC Information

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BAC

Clone NameB6Ng01-031F09
ChromosomeX (Build37)
Map Location 99,747,183 - 99,913,705
singlet/doubletdoublet
Overlap genePhka1, LOC668331, LOC100042516, EG668339, Dmrtc1b
Upstream geneTaf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8
Downstream geneEG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031F09.bB6Ng01-031F09.g
ACCDH860985DH860986
length883939
definitionDH860985|Mus musculus domesticus DNA, BAC clone: B6Ng01-031F09, 5' end.DH860986|Mus musculus domesticus DNA, BAC clone: B6Ng01-031F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,747,183 - 99,748,069)(99,913,096 - 99,913,705)
sequence
gaattctagcaagtagtgactgggtatgcaaagaattttggctcaagttc
tgtcccccagaagagcataaggcaagggaactctcaaagggagcagggag
ttggggacataggatgatatccctcagcagccttggaggagatctgactg
gctatttctgagagaaaaaattcatggctcacaccttagttattgctaac
aagtaaggtgggggggtgtataaagaccaggacagcccaacatgactgaa
aatatgacttttgggggttatttttattttattttattttttactgttta
tttgacatggggtctggctatattgctcaggctggcttttaacttgaaat
attcctgcctcaacctcctaagtgctgcgattagaggtaaatgccaaagt
acctggttagtaattcttttgatttgcaactagcttaatatgggactatt
actgtcttaagtacaacttcatgactttaggatgcatggcttttaaatca
tatcttgacttgtcaaagtcagtctttataacagtcagatttgcttaaca
gttgttgaagcttagcaatgggaaaatgtaagagccaaggcctcaggggg
cagctccacatagatgatttgccttgcatgaacaagtcctcagtttgatc
ctgagcactgtaaaaacagcatgtgaagtttcagataataggaatatctt
tgtgttttttactttctcattaaataatgttaggtaaaaaaaatgcttct
catctgatctatttccctagctgtgtgaccttgactaaattgatccacct
ttccaaactgatttctcatttatataatgtaggtactgaatttctcattt
taataatccctcttttttgttttttgttttttt
gaattcaactaacctgagataaaaattcactgaccaccccccaaccccta
aattgggcttgggcagtgacctaggctgtagcagtatggatttgagggtg
actagatttaaggggcctacagagaacagcagagagtcatctatgcctga
gagagcctttctgtgtttgtttccctgtatctttcactccccaccctgcc
tcccccatctccaaacagggacatagacaactcggatctttttacactca
gcttctccctgtgaataaataattgggagacaagggtacaaaggactccg
gaccaggtaattcatttctataaagagagaaatataaccatttgatactt
gaagaaggtataaagatatagtgttctaacaagtctctcgggatagtcat
attctgtctaacatgggctccacagattttgggtttaaatcctggtttga
caagctgcctcttataagtaggtgtagtacctaaacatgggaaattttac
ctgccgttcagaaccagatagggaatattagtagagagagcagtgataat
cacctgctataaacaggtattaagtaatagaagtctgtggctccaggtag
agagcataacagatataataatgggtattaattaaataaatgtctatggc
tcaaggtacagagtgccctaataagtcttacaggatactcatatttctgt
ctaacgtgggctccacaggaaatttgggttaaatcctggtttgacaagct
gcttcttataagcaggtaggaaagggaaaagaaagggaaagaaggaaagg
gaaagaatggaaacggaagggaaacggacacagagtgtggattatgtttt
aaagatgatataataaagtctgcaggagagtttattctgtctacatgggt
cacaaaatttggggtttaattcctgacatgacaattaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_99747183_99748069
seq2: B6Ng01-031F09.b_36_918

seq1  GAATTCTAGCAAGTAGTGACTGGGTATGCAAAGAATTTTGGCTCAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCAAGTAGTGACTGGGTATGCAAAGAATTTTGGCTCAAGTTC  50

seq1  TGTCCCCCAGAAGAGCATAAGGCAAGGGAACTCTCAAAGGGAGCAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCCAGAAGAGCATAAGGCAAGGGAACTCTCAAAGGGAGCAGGGAG  100

seq1  TTGGGGACATAGGATGATATCCCTCAGCAGCCTTGGAGGAGATCTGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGACATAGGATGATATCCCTCAGCAGCCTTGGAGGAGATCTGACTG  150

seq1  GCTATTTCTGAGAGAAAAAATTCATGGCTCACACCTTAGTTATTGCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCTGAGAGAAAAAATTCATGGCTCACACCTTAGTTATTGCTAAC  200

seq1  AAGTAAGGTGGGGGGGTGTATAAAGACCAGGACAGCCCAACATGACTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGTGGGGGGGTGTATAAAGACCAGGACAGCCCAACATGACTGAA  250

seq1  AATATGACTTTTGGGGGTTATTTTTATTTTATTTTATTTTTTACTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGACTTTTGGGGGTTATTTTTATTTTATTTTATTTTTTACTGTTTA  300

seq1  TTTGACATGGGGTCTGGCTATATTGCTCAGGCTGGCTTTTAACTTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATGGGGTCTGGCTATATTGCTCAGGCTGGCTTTTAACTTGAAAT  350

seq1  ATTCCTGCCTCAACCTCCTAAGTGCTGCGATTAGAGGTAAATGCCAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGCCTCAACCTCCTAAGTGCTGCGATTAGAGGTAAATGCCAAAGT  400

seq1  ACCTGGTTAGTAATTCTTTTGATTTGCAACTAGCTTAATATGGGACTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTTAGTAATTCTTTTGATTTGCAACTAGCTTAATATGGGACTATT  450

seq1  ACTGTCTTAAGTACAACTTCATGACTTTAGGATGCATGGCTTTTAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTAAGTACAACTTCATGACTTTAGGATGCATGGCTTTTAAATCA  500

seq1  TATCTTGACTTGTCAAAGTCAGTCTTTATAACAGTCAGATTTGCTTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGACTTGTCAAAGTCAGTCTTTATAACAGTCAGATTTGCTTAACA  550

seq1  GTTGTTGAAGCTTAGCAATGGGAAAATGTAAGAGCCAAGGCCTCAGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGAAGCTTAGCAATGGGAAAATGTAAGAGCCAAGGCCTCAGGGGG  600

seq1  CAGCTCCACATAGATGATTTGCCTTGCATGAACAAGTCCTCAGTTTGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCACATAGATGATTTGCCTTGCATGAACAAGTCCTCAGTTTGATC  650

seq1  CTGAGCACTGTAAAAACAGCATGTGAAGTTTCAGATAATAGGAATATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACTGTAAAAACAGCATGTGAAGTTTCAGATAATAGGAATATCTT  700

seq1  TGTG-TTTTTACTTTCTCATTAAATAATGTTAGGTAAAAAAAATGCTTCT  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTTACTTTCTCATTAAATAATGTTAGGTAAAAAAAATGCTTCT  750

seq1  CATCTGATCTATTTCCCTAGCTGTGTGACCTTGACTAAATTGATCCACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATCTATTTCCCTAGCTGTGTGACCTTGACTAAATTGATCCACCT  800

seq1  TTCCAAACTGATTTCTACATTTATAATAAATGTAGGTACTGAATTTCTCA  849
      |||||||||||||||| ||||||||   ||||||||||||||||||||||
seq2  TTCCAAACTGATTTCT-CATTTATA--TAATGTAGGTACTGAATTTCTCA  847

seq1  TTTTAATAAGTCCCTCTTTTTTTGTTTTTTGTTTTTTT  887
      ||||||||| |||||| |||||||||||||||||||||
seq2  TTTTAATAA-TCCCTC-TTTTTTGTTTTTTGTTTTTTT  883

seq1: chrX_99913096_99913705
seq2: B6Ng01-031F09.g_68_677 (reverse)

seq1  GTTATGCTCTCTACCTGGAGCCACAGACTTCTATTACTTAATACCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTCTCTACCTGGAGCCACAGACTTCTATTACTTAATACCTGTTT  50

seq1  ATAGCAGGTGATTATCACTGCTCTCTCTACTAATATTCCCTATCTGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGGTGATTATCACTGCTCTCTCTACTAATATTCCCTATCTGGTTC  100

seq1  TGAACGGCAGGTAAAATTTCCCATGTTTAGGTACTACACCTACTTATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGGCAGGTAAAATTTCCCATGTTTAGGTACTACACCTACTTATAAG  150

seq1  AGGCAGCTTGTCAAACCAGGATTTAAACCCAAAATCTGTGGAGCCCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTTGTCAAACCAGGATTTAAACCCAAAATCTGTGGAGCCCATGT  200

seq1  TAGACAGAATATGACTATCCCGAGAGACTTGTTAGAACACTATATCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGAATATGACTATCCCGAGAGACTTGTTAGAACACTATATCTTTA  250

seq1  TACCTTCTTCAAGTATCAAATGGTTATATTTCTCTCTTTATAGAAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTTCAAGTATCAAATGGTTATATTTCTCTCTTTATAGAAATGAA  300

seq1  TTACCTGGTCCGGAGTCCTTTGTACCCTTGTCTCCCAATTATTTATTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGGTCCGGAGTCCTTTGTACCCTTGTCTCCCAATTATTTATTCAC  350

seq1  AGGGAGAAGCTGAGTGTAAAAAGATCCGAGTTGTCTATGTCCCTGTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGCTGAGTGTAAAAAGATCCGAGTTGTCTATGTCCCTGTTTGG  400

seq1  AGATGGGGGAGGCAGGGTGGGGAGTGAAAGATACAGGGAAACAAACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGGAGGCAGGGTGGGGAGTGAAAGATACAGGGAAACAAACACAG  450

seq1  AAAGGCTCTCTCAGGCATAGATGACTCTCTGCTGTTCTCTGTAGGCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCTCTCAGGCATAGATGACTCTCTGCTGTTCTCTGTAGGCCCCT  500

seq1  TAAATCTAGTCACCCTCAAATCCATACTGCTACAGCCTAGGTCACTGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAGTCACCCTCAAATCCATACTGCTACAGCCTAGGTCACTGCCC  550

seq1  AAGCCCAATTTAGGGGTTGGGGGGTGGTCAGTGAATTTTTATCTCAGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAATTTAGGGGTTGGGGGGTGGTCAGTGAATTTTTATCTCAGGTT  600

seq1  AGTTGAATTC  610
      ||||||||||
seq2  AGTTGAATTC  610