BAC Information

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BAC

Clone NameB6Ng01-031H15
ChromosomeX (Build37)
Map Location 49,657,224 - 49,798,519
singlet/doubletdoublet
Overlap geneGpc3
Upstream geneHs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4
Downstream geneKis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031H15.bB6Ng01-031H15.g
ACCDH861077DH861078
length1,048735
definitionDH861077|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H15, 5' end.DH861078|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,657,224 - 49,658,278)(49,797,783 - 49,798,519)
sequence
gaattctctggtaaaatctgtgccactcttaaggagccatttgcttagaa
aaaatagttatagaaaattgtaattggggacatgtgctcaaatacaaata
accagagattctgttctccattcttctttcattcttctaggttgaaaagc
tattttgttctaccatcattttcttttgctctacttacgtccaaccatgc
cacgtcagagcttttcaatgtcttggaaatggagatgactgaggtattag
tccacactcactttatgcccattagacgaatctttcaaatatattttgtt
taatgaacactgcccacactcccctacagtcaggagctgactatttccta
atgcaagtcattcattccactgaggaattgccgaaagggtaggaaagccc
atcctcccatcagctttgcttctggttctactcttatctcccatgtatca
gaccgctaaaccatagacatgcgcacatcttccaaatcctcatctcatgt
agaccgaacactgacacttaattgcactgtcttaccattgtcacctctca
aattcttccttgtacttcctcccctcctcttgatgctctttgcttacaga
tgctcattgagtgcctgtcctgcctgacttgcctgcttgactgagtcacc
tttgaggactaggacaggaatctcttattccagtcctcataggtccagct
gtgggaccctagaggggccttggaaggaggagtcagttcataagtcagtc
agagtgggggcactttgctaccctgccaaatatggggagaaagtaagcaa
atattacacacagggttcggaatgtggctcagtggcaaggtgcttacttg
gcagcatgaagtcctcagtactgttaaaaaatcataccagcactgcacat
ggataattaaaatatctgttactttgtgatactggggataaaacccaggg
cttcccacatagtagtaagcattctaccagtgagcttctgccccagtcct
gaatgtttcttaatgacatctactaagcctcgatgtgtgtgtatgtgg
gaattccatagcattgcatctaagttcctgcccagcctggccccagcctc
cttttccatatggtctccatagccattttatttcatccacccatatggca
tttatagagagacaccatgtggaagacattgctaggtgtattgtgatcta
acaccacattactcccttttggtaggggctttattagttccccatggccc
tacttgggccccattaaaaaaattatgaggtgctgagtgtctggcaatga
ttgtagaaatggcctgggggaaaattggacacggatatggtgggagaagg
aagaaagacattgaacagcaaaattgataggtacaaaccactctgtatat
ttcagtgaatttccaactcccacaaacttagtgaaaaccatgcaaactga
aattgggtaagcagtgtgtgatatattaacataataaaacatcacattac
atggaaatgtgtatgtgaaataatgttagtagtaacagttaattaacatt
gatgaaatgcttattagatgctgagcattgttgtatatatggatatgatg
tatatgtgtatgtatgtgttttacaaatgtaactatcacatccgaactta
gcctttaatttggcccagtgtttcaggtagacataacaaacatcagaatg
gttaagagccaaggccacatatttaacactaatagagtcacaattgagat
gatatatgttcaacgtcttgtgctctttgtataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_49657224_49658278
seq2: B6Ng01-031H15.b_45_1092

seq1  GAATTCTCTGGTAAAATCTGTGCCACTCTTAAGGAGCCATTTGCTTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTAAAATCTGTGCCACTCTTAAGGAGCCATTTGCTTAGAA  50

seq1  AAAATAGTTATAGAAAATTGTAATTGGGGACATGTGCTCAAATACAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTATAGAAAATTGTAATTGGGGACATGTGCTCAAATACAAATA  100

seq1  ACCAGAGATTCTGTTCTCCATTCTTCTTTCATTCTTCTAGGTTGAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGATTCTGTTCTCCATTCTTCTTTCATTCTTCTAGGTTGAAAAGC  150

seq1  TATTTTGTTCTACCATCATTTTCTTTTGCTCTACTTACGTCCAACCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTCTACCATCATTTTCTTTTGCTCTACTTACGTCCAACCATGC  200

seq1  CACGTCAGAGCTTTTCAATGTCTTGGAAATGGAGATGACTGAGGTATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCAGAGCTTTTCAATGTCTTGGAAATGGAGATGACTGAGGTATTAG  250

seq1  TCCACACTCACTTTATGCCCATTAGACGAATCTTTCAAATATATTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTCACTTTATGCCCATTAGACGAATCTTTCAAATATATTTTGTT  300

seq1  TAATGAACACTGCCCACACTCCCCTACAGTCAGGAGCTGACTATTTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACACTGCCCACACTCCCCTACAGTCAGGAGCTGACTATTTCCTA  350

seq1  ATGCAAGTCATTCATTCCACTGAGGAATTGCCGAAAGGGTAGGAAAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGTCATTCATTCCACTGAGGAATTGCCGAAAGGGTAGGAAAGCCC  400

seq1  ATCCTCCCATCAGCTTTGCTTCTGGTTCTACTCTTATCTCCCATGTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCCATCAGCTTTGCTTCTGGTTCTACTCTTATCTCCCATGTATCA  450

seq1  GACCGCTAAACCATAGACATGCGCACATCTTCCAAATCCTCATCTCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGCTAAACCATAGACATGCGCACATCTTCCAAATCCTCATCTCATGT  500

seq1  AGACCGAACACTGACACTTAATTGCACTGTCTTACCATTGTCACCTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGAACACTGACACTTAATTGCACTGTCTTACCATTGTCACCTCTCA  550

seq1  AATTCTTCCTTGTACTTCCTCCCCTCCTCTTGATGCTCTTTGCTTACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCCTTGTACTTCCTCCCCTCCTCTTGATGCTCTTTGCTTACAGA  600

seq1  TGCTCATTGAGTGCCTGTCCTGCCTGACTTGCCTGCTTGACTGAGTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTGAGTGCCTGTCCTGCCTGACTTGCCTGCTTGACTGAGTCACC  650

seq1  TTTGAGGACTAGGACAGGAATCTCTTATTCCAGTCCTCATAGGTCCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGACTAGGACAGGAATCTCTTATTCCAGTCCTCATAGGTCCAGCT  700

seq1  GTGGGACCCTAGAGGGGCCTTGGAAGGAGGAGTCAGTTCATAAGTCAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACCCTAGAGGGGCCTTGGAAGGAGGAGTCAGTTCATAAGTCAGTC  750

seq1  AGAGTGGGGGCACTTTGCTACCCTGCCAAATATGGGGAGAAAGTAAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGGGCACTTTGCTACCCTGCCAAATATGGGGAGAAAGTAAGCAA  800

seq1  ATATTACACACAGGGTTCGGAATGTGGCTCAGTGGCAAGGTGCTTACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACACACAGGGTTCGGAATGTGGCTCAGTGGCAAGGTGCTTACTTG  850

seq1  GCAAGCATGAAGTCCTCAGTACTGTTAAAAAAATCATACCAGCACTGCAC  900
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GC-AGCATGAAGTCCTCAGTACTGTT-AAAAAATCATACCAGCACTGCAC  898

seq1  ATGGATAATTAAAATATCTGTTTACTTTGTGATACTGGGGATAAAACCCA  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGGATAATTAAAATATCTG-TTACTTTGTGATACTGGGGATAAAACCCA  947

seq1  GGGCTTCCCACATAGTAGGTAAGCATTCTACCAGTGAGCTTTCTGCCCCA  1000
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  GGGCTTCCCACATAGTA-GTAAGCATTCTACCAGTGAGC-TTCTGCCCCA  995

seq1  GTCCTGAAATGTTTCTTAAATGACATCTACTAAG-CTCGTATGTGTGTGT  1049
      |||||| |||||||||| |||||||||||||||| |||| ||||||||||
seq2  GTCCTG-AATGTTTCTT-AATGACATCTACTAAGCCTCG-ATGTGTGTGT  1042

seq1  ATGTGG  1055
      ||||||
seq2  ATGTGG  1048

seq1: chrX_49797783_49798519
seq2: B6Ng01-031H15.g_65_799 (reverse)

seq1  TGTATACTAAAGAGCAC-AGACGCTGGAACATATATCATCTCAAATTGTG  49
      ||||||| ||||||||| ||||| | |||||||||||||||| |||||||
seq2  TGTATAC-AAAGAGCACAAGACG-TTGAACATATATCATCTC-AATTGTG  47

seq1  ACTCTATTATGTGTTAAATATGTGACCTTGGCTCTTAACCATTCTGATGT  99
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  ACTCTATTA-GTGTTAAATATGTGGCCTTGGCTCTTAACCATTCTGATGT  96

seq1  TTGTTATGTCTACCTGTAACACTGGGCCAAATTAATGGCTAAGTTCGGAT  149
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  TTGTTATGTCTACCTGAAACACTGGGCCAAATTAAAGGCTAAGTTCGGAT  146

seq1  GTGATAGTTACATTTGT-AAACACATACATACACATATACATCATATCCA  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGATAGTTACATTTGTAAAACACATACATACACATATACATCATATCCA  196

seq1  TATATACAACAATGCTCAGCATCTAATAAGCATTTCATCAATGTTAATTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACAACAATGCTCAGCATCTAATAAGCATTTCATCAATGTTAATTA  246

seq1  ACTGTTACTACTAACATTATTTCACATACACATTTCCATGTAATGTGATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTACTACTAACATTATTTCACATACACATTTCCATGTAATGTGATG  296

seq1  TTTTATTATGTTAATATATCACACACTGCTTACCCAATTTCAGTTTGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATGTTAATATATCACACACTGCTTACCCAATTTCAGTTTGCAT  346

seq1  GGTTTTCACTAAGTTTGTGGGAGTTGGAAATTCACTGAAATATACAGAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCACTAAGTTTGTGGGAGTTGGAAATTCACTGAAATATACAGAGT  396

seq1  GGTTTGTACCTATCAATTTTGCTGTTCAATGTCTTTCTTCCTTCTCCCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTACCTATCAATTTTGCTGTTCAATGTCTTTCTTCCTTCTCCCAC  446

seq1  CATATCCGTGTCCAATTTTCCCCCAGGCCATTTCTACAATCATTGCCAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCGTGTCCAATTTTCCCCCAGGCCATTTCTACAATCATTGCCAGA  496

seq1  CACTCAGCACCTCATAATTTTTTTAATGGGGCCCAAGTAGGGCCATGGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCACCTCATAATTTTTTTAATGGGGCCCAAGTAGGGCCATGGGG  546

seq1  AACTAATAAAGCCCCTACCAAAAGGGAGTAATGTGGTGTTAGATCACAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATAAAGCCCCTACCAAAAGGGAGTAATGTGGTGTTAGATCACAAT  596

seq1  ACACCTAGCAATGTCTTCCACATGGTGTCTCTCTATAAATGCCATATGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAGCAATGTCTTCCACATGGTGTCTCTCTATAAATGCCATATGGG  646

seq1  TGGATGAAATAAAATGGCTATGGAGACCATATGGAAAAGGAGGCTGGGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAAATAAAATGGCTATGGAGACCATATGGAAAAGGAGGCTGGGGC  696

seq1  CAGGCTGGGCAGGAACTTAGATGCAATGCTATGGAATTC  737
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGGCAGGAACTTAGATGCAATGCTATGGAATTC  735