BAC Information

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BAC

Clone NameB6Ng01-034G11
ChromosomeX (Build37)
Map Location 36,331,374 - 36,331,921
singlet/doubletsinglet
Overlap geneLOC670539
Upstream gene4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171
Downstream geneLOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034G11.bB6Ng01-034G11.g
ACCDH863168DH863169
length639654
definitionDH863168|Mus musculus domesticus DNA, BAC clone: B6Ng01-034G11, 5' end.DH863169|Mus musculus domesticus DNA, BAC clone: B6Ng01-034G11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgggaaccctgtgttcagtcaatggttggctgagagcatcta
cctctgtatttgtcaggcactggcaaagcctctcaggagacagctatatc
aggctcctgttagcaagttctttttggaacctgcaacagtgtctgggttt
gggaactgtatgtgggatgatccccaggtgggacagtcactggatgacct
ttcctacactttttgttccaaatttagtctctgtatcttcttccatgggt
attttgattccccttctaagaaggaccgaagtatccaccctgtggtcttc
cttcttcttgagcttcatgtgctctacaaattgaatcttgggtattctga
acttctgggctgatatcaacttatcagtgagtgcataccattttttttgt
gtgtgtgattgggttacttcactcaggatgatgaattatagttcaaacca
tttgtctaagaacttcataaattcaaagtttttaatagctgagtaggact
ccattgtgtcaatgtaccaagatttctgtatccattcctctgttgagggg
catctgggttctttccagtttctggctgttataaataaggctgctatgaa
catagtggagcatgtgtccttattaccagttggaacatc
gaattcttgagatctttccaagacttttatcatgaatgggtgttggatta
ggtcaaatgctttctcagcatctaacaagatgatcatgtggtttttgtct
ttgagtttgtttatatagtggattacattgatggatttccatatattaag
cattcccatatccttggcatgaagcctactcggtcatgatggatgatcat
attgatgtgttttagatttggtttgcaaggattttattgagtatttttgc
atcgatattcataagggaaattggtatgaagttctctatctttgttggga
atttgtgtggtttagatatcatagtaattgtggcttcatagaatgaattg
ggtagagtaccttctgtttctattttgtggaatagttttgaggagagttg
gaattaggtcttctttgaaggtttgatagaactctgcactaaacccatct
ggtcctgggcttatttggttgggagattattgatgactgcttttattact
ttaggggatataggactgtttagatggttaatctgatcctgatttaactt
ttggtacctggtatctgtctagggaagttgtccatttcatccaggttttc
tagttttgttgagtatagccttttggagtaggatctgatgatgtttttgg
attt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_36331374_36331921
seq2: B6Ng01-034G11.g_174_722 (reverse)

seq1  AAATCC-AAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAA  49
      |||||| |||||| ||||||||||| || |||||||||||||||||||||
seq2  AAATCCAAAAACATCATCAGATCCTACTCCAAAAGGCTATACTCAACAAA  50

seq1  ACTGGAAAACCTGGATGAAATGGACAAGTT-TCTAGACAGATACCAGGTA  98
      ||| ||||||||||||||||||||||| ||  ||||||||||||||||||
seq2  ACTAGAAAACCTGGATGAAATGGACAACTTCCCTAGACAGATACCAGGTA  100

seq1  CC-AAAGCTAAATCAAGATCAGGTTAATGATCTCAACAGTCCTATATCCC  147
      || |||| ||||||| |||||| ||||  |||| ||||||||||||||||
seq2  CCAAAAGTTAAATCAGGATCAGATTAACCATCTAAACAGTCCTATATCCC  150

seq1  CTCAAGAAATAGAAGCAGTAATTAATAGTCTCCCAGCGAAAAAAAGCCCA  197
      || ||| |||| ||||||| || |||| ||||||| |  ||| |||||||
seq2  CTAAAGTAATAAAAGCAGTCATCAATAATCTCCCAAC-CAAATAAGCCCA  199

seq1  GGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGACCT  247
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  GGACCAGATGGGTTTAGTGCAGAGTTCTATCAAACCTTCAAAGAAGACCT  249

seq1  AATTCCAGTTCTGCAC-AAACTATTCCACAAAATAGAAACGGAAGGTACT  296
      |||||||  ||| | | ||||||||||||||||||||||| |||||||||
seq2  AATTCCAACTCTCCTCAAAACTATTCCACAAAATAGAAACAGAAGGTACT  299

seq1  CTACCCAACTCATTCTATGAAGCCACAATTACTCTGACACCTAAACCAAA  346
      |||||||| |||||||||||||||||||||||| ||| | |||||||| |
seq2  CTACCCAATTCATTCTATGAAGCCACAATTACTATGATATCTAAACCACA  349

seq1  AAAAGACCCAACAAAGATAGAGAACTTCAGACCAAATTCCCTTATGAATA  396
       |||  ||||||||||||||||||||||| ||||| ||||||||||||||
seq2  CAAATTCCCAACAAAGATAGAGAACTTCATACCAATTTCCCTTATGAATA  399

seq1  TCGATGCAAAAATCCTCAATAAAGTTCTTGCTAACCGAATCCAAGTACGC  446
      ||||||||||||| ||||||||| | ||||| |||| |||| ||  || |
seq2  TCGATGCAAAAATACTCAATAAAATCCTTGCAAACCAAATCTAA-AACAC  448

seq1  ATCAAAACAATCATCCATCCTGACCAAGTAGGTTTCATCCCAGGGATGCA  496
      ||||| |  |||||||||| ||||| |||||| ||||| ||| ||||   
seq2  ATCAATATGATCATCCATCATGACCGAGTAGGCTTCATGCCAAGGATATG  498

seq1  GGGATGGTTCAATATACGGAAATCCATCAATGTAATCCAGTATATAAACA  546
      || ||| || |||||| |||||||||||||||||||||| ||||||||||
seq2  GGAATGCTT-AATATATGGAAATCCATCAATGTAATCCACTATATAAACA  547

seq1  AA  548
      ||
seq2  AA  549