BAC Information

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BAC

Clone NameB6Ng01-034O10
ChromosomeX (Build37)
Map Location 16,645,886 - 16,781,303
singlet/doubletdoublet
Overlap geneLOC100043063, Efhc2
Upstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph
Downstream geneFundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951, Utx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034O10.bB6Ng01-034O10.g
ACCDH863517DH863518
length964997
definitionDH863517|Mus musculus domesticus DNA, BAC clone: B6Ng01-034O10, 5' end.DH863518|Mus musculus domesticus DNA, BAC clone: B6Ng01-034O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,780,327 - 16,781,303)(16,645,886 - 16,646,895)
sequence
gaattcattgtcctttggcccctctcttttgggtattgaagttactggcc
aggtttttgctttgtttgtttgtttgttttgtttgttttctttttgtttt
tataacttaaagcactataatggaaaagttatatatatgttgttcaacaa
aaagaccatgtgtaaaaaaaatctcagtttttaaatgtagacttaataaa
ttctatgcacttggaaactattgctttgtaatttaggatttttttatttt
aaggttcattagataattatgtactatttatacacacatagtacacactt
atctcatttataaagaaaatgcacaaggttgatttgctaggtgtcaaaac
agagttaaagccacaattaggggagcgagctctgtgggatgaaaggagaa
ggatcatgaaaacaccaggaatggctgatacctactgagtgcagtgcagg
tcaggtctgatccatgtgaaatgagaagacaaggaaggagggcaagctag
ggaaaactttaagtagttagcacagtctagagaaaatctgagccagaccg
atatggttccctgaacagcctacttctcagagaagttcagagtcatgcag
aagttgacagtcgaaggctggtggttcagtgctcttctccatgtcactgt
tggattcagcatctttccagagtatctatactacctatttgtttattgtt
ttagaaatctgggttatttctaatactgcaaacctataatatatgatggc
tttggactcaaacaagaaatacagtgattaagcagttagatttccagaga
ccaccaggcctgggttggaaactgagctccaccctaatacatgacagggt
ttagtatgtatcatctctgaacttagtctgcttgcttaaatagagtaaca
cagtgatctttgatatgtactgtggagttatattgatattgggtgagtga
ctgagttcataggg
gaattctcaatgcaagtccggagaaggagtgaggagccacttgttaacac
aagggaagaagaaaatgaaggcctggtctcagtagataatctgaatattg
atttatcacacagcatgggattaaatcaatcctgggtgaatccagttgtt
tcagtcatcatatatgtcatatagaattgtcctggactggacaatgaagc
acttcttaaaggcaaacgagcacaagaatccccaaggattctgctaaaac
acagattttgacccagcaggtctcagatgaagcccctatttctacatctt
taacattcaggtaatacctaagctttttttggcccatggattacactgga
gctcacaagtgccttctagcagaagcactttgtggtagcagccaggtgag
tgggaggacttttgttctcctccaatccctattttctctggctgtgagct
tacatggagagaggggaatcaagaacccttcccagtaataaatccatgga
agtcaatattctatgaggcattctaagaagctccctcctatttattctgg
ttttaaaacactgctctagacagtgttatgaggagatttatagtttttaa
tcttcttatacagcacaactgctaaatacagcataatatatgtgacagga
attagtccagaatttatttaagacttttcctcctcagttcatatgtccaa
agattgccatttccaattatttattagaagtgtgatgtttttcaaggtgg
atgcattactcttgttatctgctttcaattagctgagaatttgctattct
tagccaaatgtccattcatcagcaaattctacattcctggcagtctgatt
aacttctcaggctcttcctttatacttaaaataaatgagctatctatgtt
tcgtgttgcttgctatgggagaacaaatagcttggggtagggaagaaaaa
agatggtggtagtgaagaagaaaggaatgagatggaaggaagtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_16780327_16781303
seq2: B6Ng01-034O10.b_48_1011 (reverse)

seq1  CCCTATAGAACTCAGTCACTCACACAAATTATCACATATAACCTCCACAG  50
      |||||| |||||||||||||||| |||  ||||| |||||| ||||||||
seq2  CCCTAT-GAACTCAGTCACTCACCCAA--TATCA-ATATAA-CTCCACAG  45

seq1  TAACATTATCAAAGGATCACTGTTGTTACTCTTATTTTAAAGGCAAGCAG  100
      | ||| ||||||| |||||||| |||||||| |||||   | ||||||||
seq2  T-ACA-TATCAAA-GATCACTG-TGTTACTC-TATTT---AAGCAAGCAG  87

seq1  ACTAAAGTTCAGAGATGATACATAACTAAACCCTGTCATGTATTAGGGTG  150
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACT-AAGTTCAGAGATGATACAT-ACTAAACCCTGTCATGTATTAGGGTG  135

seq1  GAGCTCAGTTTCCAACCCAGGCCTGGTGGTCTCTGGAAATCTAACTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGTTTCCAACCCAGGCCTGGTGGTCTCTGGAAATCTAACTGCTT  185

seq1  AATCACTGTATTTCTTGTTTGAGTCCAAAGCCATCATATATTATAGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGTATTTCTTGTTTGAGTCCAAAGCCATCATATATTATAGGTTT  235

seq1  GCAGTATTAG-AATAACCCAGATTTCTAAAACAATAAACAAATAGGTAGT  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATTAGAAATAACCCAGATTTCTAAAACAATAAACAAATAGGTAGT  285

seq1  ATAGATACTCTGG-AAGATGCTGAATCCAACAGTGACATGGAGAAGAGCA  348
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATAGATACTCTGGAAAGATGCTGAATCCAACAGTGACATGGAGAAGAGCA  335

seq1  CTGAACCACCAGCCTTCGACTGTCAACTTCTGCATGACTCTGAACTTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCACCAGCCTTCGACTGTCAACTTCTGCATGACTCTGAACTTCTC  385

seq1  TGAGAAGTAGGCTGTTCAGGGAACCATATCGGTCTGGCTCAGATTTTCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTAGGCTGTTCAGGGAACCATATCGGTCTGGCTCAGATTTTCTC  435

seq1  TAGACTGTGCTAACTACTTAAAGTTTTCCCTAGCTTGCCCTCCTTCCTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTGCTAACTACTTAAAGTTTTCCCTAGCTTGCCCTCCTTCCTTG  485

seq1  TCTTCTCATTTCACATGGATCAGACCTGACCTGCACTGCACTCAGTAGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCATTTCACATGGATCAGACCTGACCTGCACTGCACTCAGTAGGT  535

seq1  ATCAGCCATTCCTGGTGTTTTCATGATCCTTCTCCTTTCATCCCACAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCATTCCTGGTGTTTTCATGATCCTTCTCCTTTCATCCCACAGAG  585

seq1  CTCGCTCCCCTAATTGTGGCTTTAACTCTGTTTTGACACCTAGCAAATCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTCCCCTAATTGTGGCTTTAACTCTGTTTTGACACCTAGCAAATCA  635

seq1  ACCTTGTGCATTTTCTTTATAAATGAGATAAGTGTGTACTATGTGTGTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGCATTTTCTTTATAAATGAGATAAGTGTGTACTATGTGTGTAT  685

seq1  AAATAGTACATAATTATCTAATGAACCTTAAAATAAAAAAATCCTAAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTACATAATTATCTAATGAACCTTAAAATAAAAAAATCCTAAATT  735

seq1  ACAAAGCAATAGTTTCCAAGTGCATAGAATTTATTAAGTCTACATTTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCAATAGTTTCCAAGTGCATAGAATTTATTAAGTCTACATTTAAA  785

seq1  AACTGAGATTTTTTTTACACATGGTCTTTTTGTTGAACAACATATATATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGATTTTTTTTACACATGGTCTTTTTGTTGAACAACATATATATA  835

seq1  ACTTTTCCATTATAGTGCTTTAAGTTATAAAAACAAAAAGAAAACAAACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCATTATAGTGCTTTAAGTTATAAAAACAAAAAGAAAACAAACA  885

seq1  AAACAAACAAACAAACAAAGCAAAAACCTGGCCAGTAACTTCAATACCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAAGCAAAAACCTGGCCAGTAACTTCAATACCCA  935

seq1  AAAGAGAGGGGCCAAAGGACAATGAATTC  977
      |||||||||||||||||||||||||||||
seq2  AAAGAGAGGGGCCAAAGGACAATGAATTC  964

seq1: chrX_16645886_16646895
seq2: B6Ng01-034O10.g_69_1064

seq1  GAATTCTCAATGCAAGTCCGGAGAAGGAGTGAGGAGCCACTTGTTAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATGCAAGTCCGGAGAAGGAGTGAGGAGCCACTTGTTAACAC  50

seq1  AAGGGAAGAAGAAAATGAAGGCCTGGTCTCAGTAGATAATCTGAATATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGAAGAAAATGAAGGCCTGGTCTCAGTAGATAATCTGAATATTG  100

seq1  ATTTATCACACAGCATGGGATTAAATCAATCCTGGGTGAATCCAGTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCACACAGCATGGGATTAAATCAATCCTGGGTGAATCCAGTTGTT  150

seq1  TCAGTCATCATATATGTCATATAGAATTGTCCTGGACTGGACAATGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATCATATATGTCATATAGAATTGTCCTGGACTGGACAATGAAGC  200

seq1  ACTTCTTAAAGGCAAACGAGCACAAGAATCCCCAAGGATTCTGCTAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTAAAGGCAAACGAGCACAAGAATCCCCAAGGATTCTGCTAAAAC  250

seq1  ACAGATTTTGACCCAGCAGGTCTCAGATGAAGCCCCTATTTCTACATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTTGACCCAGCAGGTCTCAGATGAAGCCCCTATTTCTACATCTT  300

seq1  TAACATTCAGGTAATACCTAAGCTTTTTTTGGCCCATGGATTACACTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCAGGTAATACCTAAGCTTTTTTTGGCCCATGGATTACACTGGA  350

seq1  GCTCACAAGTGCCTTCTAGCAGAAGCACTTTGTGGTAGCAGCCAGGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAAGTGCCTTCTAGCAGAAGCACTTTGTGGTAGCAGCCAGGTGAG  400

seq1  TGGGAGGACTTTTGTTCTCCTCCAATCCCTATTTTCTCTGGCTGTGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGACTTTTGTTCTCCTCCAATCCCTATTTTCTCTGGCTGTGAGCT  450

seq1  TACATGGAGAGAGGGGAATCAAGAACCCTTCCCAGTAATAAATCCATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGAGAGAGGGGAATCAAGAACCCTTCCCAGTAATAAATCCATGGA  500

seq1  AGTCAATATTCTATGAGGCATTCTAAGAAGCTCCCTCCTATTTATTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATATTCTATGAGGCATTCTAAGAAGCTCCCTCCTATTTATTCTGG  550

seq1  TTTTAAAACACTGCTCTAGACAGTGTTATGAGGAGATTTATAGTTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACACTGCTCTAGACAGTGTTATGAGGAGATTTATAGTTTTTAA  600

seq1  TCTTCTTATACAGCACAACTGCTAAATACAGCATAATATATGTGACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTATACAGCACAACTGCTAAATACAGCATAATATATGTGACAGGA  650

seq1  ATTAGTCCAGAATTTATTTAAGACTTTTCCTCCTCAGTTCATATGTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCCAGAATTTATTTAAGACTTTTCCTCCTCAGTTCATATGTCCAA  700

seq1  AGATTGCCATTTCCAATTATTTATTAGAAGTGTGATGTTTTTCAAGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCCATTTCCAATTATTTATTAGAAGTGTGATGTTTTTCAAGGTGG  750

seq1  ATGCATTACTCTTGTTATCTGCTTTCAATTAGCTGAGAATTTGCTATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTACTCTTGTTATCTGCTTTCAATTAGCTGAGAATTTGCTATTCT  800

seq1  TAGCCAAATGTCCATTCATCAGCAAATTCTACATTCCTGGCAGTCTGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAATGTCCATTCATCAGCAAATTCTACATTCCTGGCAGTCTGATT  850

seq1  AACTTCTCAGGGCTCTTCCTTTATACTTAAAATAAATGAGGCTATCTATG  900
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  AACTTCTCA-GGCTCTTCCTTTATACTTAAAATAAATGA-GCTATCTATG  898

seq1  TTTCGTGTTTGCTTGCTTATGGGAGGAAACAAAATAGGCTTGGGGTAGGG  950
      ||||||| |||||||| ||||||||  ||| ||||| |||||||||||||
seq2  TTTCGTG-TTGCTTGC-TATGGGAG--AAC-AAATA-GCTTGGGGTAGGG  942

seq1  AAGAAAAAAGAATGGTGGTAGTGAAAGAAGGAAAGGAATGAGAAGGGGAA  1000
      |||||||||| |||||||||||| ||||| |||||||||||||   ||||
seq2  AAGAAAAAAG-ATGGTGGTAGTG-AAGAA-GAAAGGAATGAGA--TGGAA  987

seq1  GGAAAGTGGG  1010
      || |||||||
seq2  GG-AAGTGGG  996