BAC Information

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BAC

Clone NameB6Ng01-036A12
ChromosomeX (Build37)
Map Location 91,679,479 - 91,852,646
singlet/doubletdoublet
Overlap geneMaged1, LOC668150
Upstream genePola1, EG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik, EG668148
Downstream geneEG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331, EG631319, Zxda, Gm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036A12.bB6Ng01-036A12.g
ACCDH864337DH864338
length1,044950
definitionDH864337|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A12, 5' end.DH864338|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,679,479 - 91,680,557)(91,851,691 - 91,852,646)
sequence
gaattcctgagtactacaccaccatggcctgcttatgtgtcttttagcat
acagttgtttgtatttattcatgtatttgctgtaatcatagtctgttata
gaagagtaggtgagcagcaattgatcacaggtcagccaatcctgagtgag
ggacaggagatgccttcttctccctagccatattgaaagggaaacaggtt
cagatccctaaagctggagttggggagatggtaactaggaagcctctagt
gcttcatccgaccgatgatagaggagtatgtgggaattctgaagtggata
cactcagacagagagggactgtgccttagaaagcattgcatttctagcag
catccacttagcattcgttagcccttggagattcagggaccacactcgtg
ccaggccacactcatatgtactatagttctctgaagtgaccagcctctgg
catgtttgaaaatggaagaaaccaagaagagtagatattcttaatggttt
ttgaaatgaccctgaacataatgctgccacacttatactttgatatatac
ctctatgtgcctaattatttgatcactataggatggacttttttttatag
tattaatcacattaatccacaggctctttcatcttctggtgtctaatttc
ttcactgctttaaagtttttattttataggtctttcatttccttggcata
ttagtttatttttctgtggctgtgataaaagactatgcccaaaggaactt
tatggaagaaataatttattttagattttatggtttcctaagggattaaa
agtccatcattgcaggagcataacagcagcaccagcatagcagcacaggc
atagcagcacaggcatagcagcacaggcatagcagcacagacaagcagca
cagcatagcagcacagactagcagctgatcagcagctgaagctcacattc
tcagcatcagcatagtacaagataatgacatatgccaggctttaattttc
atgctcacagtgatatactctctacaaggactactcttctcgac
gaattcaatcttccaaactcaaagtgtaaaaagcccaggacctagagatg
gctcagtggttaggaacactggctgcaccaggtggtggtggtgcggagaa
tgcaggcagagcagttgtggttctgtttacattgatggtcggttgagggc
attgctgaagagggctcagccttctgaggcagctaccaacttatcctctc
tgtgaggatcctcgggcagcttgcttctgtggggctaccctttgccacca
tgcttcaatttcaggcaaggaatttttgcactgggacaacctagatcttg
atctgactcttcctgaactcgctgtctcttgggagtcccgctgggtgctg
gcatctcttgcgcagcctttgcaggtgtgggaagctgagcatcttcatag
acatggtagcctccagtcaggcagtatgtctctccatgccaggctgcctg
ggcttgcgcaagccctttgtagaggacgtggtagtatccaggagaaggag
gagctgtgggaggcacgggcacttcacctacagcccaccgtggtgagcac
agtgcctggcctgggtggcctgtcggatgtgtgccgagggaatggtgtga
ggccctttgtcagcatgggcctgacaaaagcgaagataaactgggggagg
ctggactcctcgcaggtcccctcacacttctagaaaagtagccgggccca
gtcttcctctgttcagtgttgattgaggagttgctgaatctctgggatga
gcaaaagctttagtttctttcgaggaagcctgcttaagggtctgaaacat
cgagccaatgttcgagtcctcatcctcctttattgttggattgggttgga
ggactctaggcggggaccttgaagctggagtccataacagagtcacagtg
acagtgattgtgtctaagtgacgctggtatttttgtttggcttatgaagt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_91679479_91680557
seq2: B6Ng01-036A12.b_47_1090

seq1  GAATTCCTGAGTACTACACCACCATGGCCTGCTTATGTGTCTTTTAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGTACTACACCACCATGGCCTGCTTATGTGTCTTTTAGCAT  50

seq1  ACAGTTGTTTGTATTTATTCATGTATTTGCTGTAATCATAGTCTGTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTTTGTATTTATTCATGTATTTGCTGTAATCATAGTCTGTTATA  100

seq1  GAAGAGTAGGTGAGCAGCAATTGATCACAGGTCAGCCAATCCTGAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTAGGTGAGCAGCAATTGATCACAGGTCAGCCAATCCTGAGTGAG  150

seq1  GGACAGGAGATGCCTTCTTCTCCCTAGCCATATTGAAAGGGAAACAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGAGATGCCTTCTTCTCCCTAGCCATATTGAAAGGGAAACAGGTT  200

seq1  CAGATCCCTAAAGCTGGAGTTGGGGAGATGGTAACTAGGAAGCCTCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCTAAAGCTGGAGTTGGGGAGATGGTAACTAGGAAGCCTCTAGT  250

seq1  GCTTCATCCGACCGATGATAGAGGAGTATGTGGGAATTCTGAAGTGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATCCGACCGATGATAGAGGAGTATGTGGGAATTCTGAAGTGGATA  300

seq1  CACTCAGACAGAGAGGGACTGTGCCTTAGAAAGCATTGCATTTCTAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGACAGAGAGGGACTGTGCCTTAGAAAGCATTGCATTTCTAGCAG  350

seq1  CATCCACTTAGCATTCGTTAGCCCTTGGAGATTCAGGGACCACACTCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTTAGCATTCGTTAGCCCTTGGAGATTCAGGGACCACACTCGTG  400

seq1  CCAGGCCACACTCATATGTACTATAGTTCTCTGAAGTGACCAGCCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCACACTCATATGTACTATAGTTCTCTGAAGTGACCAGCCTCTGG  450

seq1  CATGTTTGAAAATGGAAGAAACCAAGAAGAGTAGATATTCTTAATGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGAAAATGGAAGAAACCAAGAAGAGTAGATATTCTTAATGGTTT  500

seq1  TTGAAATGACCCTGAACATAATGCTGCCACACTTATACTTTGATATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGACCCTGAACATAATGCTGCCACACTTATACTTTGATATATAC  550

seq1  CTCTATGTGCCTAATTATTTGATCACTATAGGATGGACTTTTTTTTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGTGCCTAATTATTTGATCACTATAGGATGGACTTTTTTTTATAG  600

seq1  TATTAATCACATTAATCCACAGGCTC-TTCATCTTCTGGTGTCTAATTTC  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATTAATCACATTAATCCACAGGCTCTTTCATCTTCTGGTGTCTAATTTC  650

seq1  TTCACTGCTTTAAAGTTTTTATTTTATAGGTCTTTCATTTCCTTGGCATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCTTTAAAGTTTTTATTTTATAGGTCTTTCATTTCCTTGGCATA  700

seq1  TTAG-TTATTTTTCTGTGGCTGTGATAAAAGACTATGCCCAAAGGAACTT  748
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTATTTTTCTGTGGCTGTGATAAAAGACTATGCCCAAAGGAACTT  750

seq1  TATGGAAGAAATAATTTATTTTAGA-TTTATGG-TTCCTAAGGGATTAAA  796
      ||||||||||||||||||||||||| ||||||| ||||||||||||| ||
seq2  TATGGAAGAAATAATTTATTTTAGATTTTATGGTTTCCTAAGGGATT-AA  799

seq1  AAGTCCATCATGGCAGGGAGGCATAACAAGCAGCACCAGGCATAGCAGCA  846
      ||||||||||| |||||   ||||||| |||||||||| |||||||||||
seq2  AAGTCCATCATTGCAGG--AGCATAAC-AGCAGCACCA-GCATAGCAGCA  845

seq1  CCAGGCATAGCAGCACCAGGCATAGCAGCACCAGGCATAGCAGCACCAGA  896
       |||||||||||||| |||||||||||||| |||||||||||||| ||||
seq2  -CAGGCATAGCAGCA-CAGGCATAGCAGCA-CAGGCATAGCAGCA-CAGA  891

seq1  CATAGCAGCACCAGGCATAGCAGCACCAGACATAGCAGCTGGATCAGCAA  946
      || ||||||||   ||||||||||| ||||| |||||||| ||||||| |
seq2  CA-AGCAGCAC--AGCATAGCAGCA-CAGAC-TAGCAGCT-GATCAGC-A  934

seq1  GCTGAGAGCTCACATCCTCAGCCATCAGCAATAAGTAC-AGAGAATAAAT  995
      ||||| ||||||||| ||||| ||||||||   ||||| ||| |||    
seq2  GCTGA-AGCTCACATTCTCAG-CATCAGCA--TAGTACAAGATAAT----  976

seq1  TGGACATAGGGCAAGGCTTTAAATTTTCAATGCCTTCCCACAGTGATATA  1045
        ||||||  || ||||||| ||||||||     | | ||||||||||||
seq2  --GACATA-TGCCAGGCTTT-AATTTTCA-----TGCTCACAGTGATATA  1017

seq1  CTTCCTCCTACAAGGACATACTTCCTTCTTCGAC  1079
      ||  || |||||||||| ||||  |||| |||||
seq2  CT--CT-CTACAAGGAC-TACT--CTTC-TCGAC  1044

seq1: chrX_91851691_91852646
seq2: B6Ng01-036A12.g_67_1016 (reverse)

seq1  ACTTCATAAGCCAAACAAAAAATACAGCCGTTCACTTAGGAACACATTCA  50
      |||||||||||||||||||||   ||||   ||||||||  ||||| |||
seq2  ACTTCATAAGCCAAACAAAAATACCAGC--GTCACTTAG--ACACAATCA  46

seq1  CTGTCACTGTGAACTCTGTTATGGGCTCCAGCTTCAGGTTCCCCGCCTAG  100
      ||||||||||| |||||||||||| ||||||||||| | |||||||||||
seq2  CTGTCACTGTG-ACTCTGTTATGGACTCCAGCTTCAAGGTCCCCGCCTAG  95

seq1  AGTCCTTCCAACCCAAATCCCAACAATAAAGGAGGATGAGGACTCGAACA  150
      ||||| ||||||||||   |||||||||||||||||||||||||||||||
seq2  AGTCC-TCCAACCCAA--TCCAACAATAAAGGAGGATGAGGACTCGAACA  142

seq1  CTTGGCTCGATGTTTCAGACCC-TAAGCAGGCTTCCTCGAAAGACACCTA  199
       ||||||||||||||||||||| ||||||||||||||||||||| | |||
seq2  -TTGGCTCGATGTTTCAGACCCTTAAGCAGGCTTCCTCGAAAGA-AACTA  190

seq1  AAGCTCTTGCTCATCCCAGAGATTCAGCAACTCCTCAATCAACACTGGAA  249
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGCTTTTGCTCATCCCAGAGATTCAGCAACTCCTCAATCAACACT-GAA  239

seq1  CAGAGGAAGACTGGGCCCGGCTAC-TTTCTAGAAGTGTGA-GGGACCTGC  297
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  CAGAGGAAGACTGGGCCCGGCTACTTTTCTAGAAGTGTGAGGGGACCTGC  289

seq1  GAGGAGTCCAGCCT-CCCCAGTTTATCTTCGCTTTTGTCAGGCCCATGCT  346
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGGAGTCCAGCCTCCCCCAGTTTATCTTCGCTTTTGTCAGGCCCATGCT  339

seq1  GAC-AAGGGCCTCACACCATTCCCTCGGCACACATCCGACAGGCCACCCA  395
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGGCCTCACACCATTCCCTCGGCACACATCCGACAGGCCACCCA  389

seq1  GGCCAGGCACTGTGCTCACCACGGTGGGCTGTAGGTGAAGTGCCCGTGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCACTGTGCTCACCACGGTGGGCTGTAGGTGAAGTGCCCGTGCC  439

seq1  TCCCACAGCTCCTCCTTCTCCTGGATACTACCACGTCCTCTACAAAGGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGCTCCTCCTTCTCCTGGATACTACCACGTCCTCTACAAAGGGC  489

seq1  TTGCGCAAGCCCAGGCAGCCTGGCATGGAGAGACATACTGCCTGACTGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCAAGCCCAGGCAGCCTGGCATGGAGAGACATACTGCCTGACTGGA  539

seq1  GGCTACCATGTCTATGAAGATGCTCAGCTTCCCACACCTGCAAAGGCTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCATGTCTATGAAGATGCTCAGCTTCCCACACCTGCAAAGGCTGC  589

seq1  GCAAGAGATGCCAGCACCCAGCGGGACTCCCAAGAGACAGCGAGTTCAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGATGCCAGCACCCAGCGGGACTCCCAAGAGACAGCGAGTTCAGG  639

seq1  AAGAGTCAGATCAAGATCTAGGTTGTCCCAGTGCAAAAATTCCTTGCCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAGATCAAGATCTAGGTTGTCCCAGTGCAAAAATTCCTTGCCTG  689

seq1  AAATTGAAGCATGGTGGCAAAGGGTAGCCCCACAGAAGCAAGCTGCCCGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAGCATGGTGGCAAAGGGTAGCCCCACAGAAGCAAGCTGCCCGA  739

seq1  GGATCCTCACAGAGAGGATAAGTTGGTAGCTGCCTCAGAAGGCTGAGCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCACAGAGAGGATAAGTTGGTAGCTGCCTCAGAAGGCTGAGCCC  789

seq1  TCTTCAGCAATGCCCTCAACCGACCATCAATGTAAACAGAACCACAACTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCAATGCCCTCAACCGACCATCAATGTAAACAGAACCACAACTG  839

seq1  CTCTGCCTGCATTCTCCGCACCACCACCACCTGGTGCAGCCAGTGTTCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTGCATTCTCCGCACCACCACCACCTGGTGCAGCCAGTGTTCCT  889

seq1  AACCACTGAGCCATCTCTAGGTCCTGGGCTTTTTACACTTTGAGTTTGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGAGCCATCTCTAGGTCCTGGGCTTTTTACACTTTGAGTTTGGA  939

seq1  AGATTGAATTC  956
      |||||||||||
seq2  AGATTGAATTC  950