BAC Information

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BAC

Clone NameB6Ng01-036D12
ChromosomeX (Build37)
Map Location 130,857,498 - 130,968,981
singlet/doubletdoublet
Overlap geneCenpi, Drp2
Upstream geneLOC100040794, Pcdh19, LOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35
Downstream geneTaf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941, Armcx1, LOC100040933, LOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987, Nxf2, B930008K04Rik, EG621246, LOC100040635, Tceal6, EG621322, Pramel3, EG621352, EG331529, EG621380, EG666040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036D12.bB6Ng01-036D12.g
ACCDH864465DH864466
length876934
definitionDH864465|Mus musculus domesticus DNA, BAC clone: B6Ng01-036D12, 5' end.DH864466|Mus musculus domesticus DNA, BAC clone: B6Ng01-036D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,968,098 - 130,968,981)(130,857,498 - 130,858,446)
sequence
gaattcttctttgaatagctagaacaccggaacccaagtgccacagcaga
cagagtagggaagaggacacgttactcagtcaccggaactctcccctttc
catgtacagggttagtctcaacaacacttcttagctacttagccatttgt
gcaataaactaagccatgtgcggccactggttttatccttttcttctatt
catttcagaaaagcatagaaagaggaaacagtaagaccgaaaagactata
aacaaactagcccccaatccaacccataactaaaagatgctcagctgagg
cccagaccagcaactaagtctcggcagaaagaacactggcactgtgaaag
gacatcaggtctcagtcagggtaggatccttaccttgatggcttggatat
gctctgggagggaatcaataaagagatctcctatgggctcccacgtggct
cggactccctctgcttgggtcaaagtactgctcaattcctccattgcccc
ttggatctccaatagatgttccagagtatgctcaatgtggcgatgctgat
ctacacagcgggctgtcagcttctcccacagctcactggccactgttgcc
tgcttccatacaaagcgactaaggttttgaatccgctgtctgggggaggt
atctgtgaggccaaccaggaagacaagacaagctaactcagcagaggcaa
ctcagagaaagaccaaggcatactcctcctctttatacatgcttgcttgt
ggatttgggatatggtgtgtgtttgtttacatagattcatacttacatat
acatttcatggttgcactcttttggacattcaaggattaaattccaatac
atttgtttttgcatttatacctactc
gaattctgtctattccatggaaaatgaggcatcactgaaaatgatctttt
aaatagtataaaatagaataaaatgctttaaagtgggaaaccaggacaaa
agtttcaaaaatgtacttatgtgtatttgtgtgcacctgagtgtatatct
tcgcaccttctgcagacaggaacccaagaaagtcagagtgggcattaggt
ctcttggaactagagttacagatgattttgagccactttgttgtgtgctg
gaaatcaaactggaatcctttggaagaacaagtgcttgtagcctctgagc
catcactctagccccaaggataaaagttttaattttgtatcttagtgtct
taggtagggtttctattgtgtgaagagacaccatgaccaaggcaactctt
tttttcatagcattttatatatttaaacaacaatttatatggctatataa
ttccttagtatttttctacactattacttaagtttctctatttttgaagc
aacattaaaaatatttttaatgtactttttacatgtaaattttgttttca
attaccagaatactctttgtttcttttttttttttttatttttttttttt
taaagattttttttttattaatttgtaagacattggagctgtcttcaaac
ccaccaaaaaagggagtcagaactcgttacggatggtggtgagcccccat
ggggttcctgggatttgaaatccggaccttcggaaaaacagtcggggtgt
tcaaacccatgagccattcaccagcccccttggttcttatataaaacttc
cattttattttttattggtttacctattcccttacacccctcctggcccc
cgccccttttgggcacccccccataattttccccggtcccttcccctccc
cttgagggaaggggccccctgaagcctcaccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_130968098_130968981
seq2: B6Ng01-036D12.b_44_919 (reverse)

seq1  GAGTATGTATAAATGCATAAACAAATGTAATGGAATTTTAAATCCCTGAA  50
      ||||| ||||||||||| ||||||||||| ||||||||  ||||| ||||
seq2  GAGTAGGTATAAATGCAAAAACAAATGTATTGGAATTT--AATCCTTGAA  48

seq1  TGTGCAAAAAGGAGTGCAACCATGGAAATGTATATGTAAGTATGAATCTA  100
      ||| |||||  |||||||||||| ||||||||||||||||||||||||||
seq2  TGTCCAAAA--GAGTGCAACCAT-GAAATGTATATGTAAGTATGAATCTA  95

seq1  TGTATACAAACACACACCAATATCCCCAAATCCACAAGCAAGCATTGTAT  150
      |||| ||||||||||||| |||| |||||||||||||||||||| |||||
seq2  TGTAAACAAACACACACC-ATAT-CCCAAATCCACAAGCAAGCA-TGTAT  142

seq1  AAAGAGGAGGAGTATGCCTTGGTCTTTCTCTGAGTTGCCTCTGCTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAGGAGTATGCCTTGGTCTTTCTCTGAGTTGCCTCTGCTGAGTT  192

seq1  AGCTTGTCTTGTCTTCCTGGTTGGCCTCACAGATACCTCCCCCAGACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTCTTGTCTTCCTGGTTGGCCTCACAGATACCTCCCCCAGACAGC  242

seq1  GGATTCAAAACCTTAGTCGCTTTGTATGGAAGCAGGCAACAGTGGCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAAAACCTTAGTCGCTTTGTATGGAAGCAGGCAACAGTGGCCAGT  292

seq1  GAGCTGTGGGAGAAGCTGACAGCCCGCTGTGTAGATCAGCATCGCCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGGGAGAAGCTGACAGCCCGCTGTGTAGATCAGCATCGCCACAT  342

seq1  TGAGCATACTCTGGAACATCTATTGGAGATCCAAGGGGCAATGGAGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATACTCTGGAACATCTATTGGAGATCCAAGGGGCAATGGAGGAAT  392

seq1  TGAGCAGTACTTTGACCCAAGCAGAGGGAGTCCGAGCCACGTGGGAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTACTTTGACCCAAGCAGAGGGAGTCCGAGCCACGTGGGAGCCC  442

seq1  ATAGGAGATCTCTTTATTGATTCCCTCCCAGAGCATATCCAAGCCATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGATCTCTTTATTGATTCCCTCCCAGAGCATATCCAAGCCATCAA  492

seq1  GGTAAGGATCCTACCCTGACTGAGACCTGATGTCCTTTCACAGTGCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGATCCTACCCTGACTGAGACCTGATGTCCTTTCACAGTGCCAGT  542

seq1  GTTCTTTCTGCCGAGACTTAGTTGCTGGTCTGGGCCTCAGCTGAGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCTGCCGAGACTTAGTTGCTGGTCTGGGCCTCAGCTGAGCATCT  592

seq1  TTTAGTTATGGGTTGGATTGGGGGCTAGTTTGTTTATAGTCTTTTCGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTATGGGTTGGATTGGGGGCTAGTTTGTTTATAGTCTTTTCGGTC  642

seq1  TTACTGTTTCCTCTTTCTATGCTTTTCTGAAATGAATAGAAGAAAAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTTCCTCTTTCTATGCTTTTCTGAAATGAATAGAAGAAAAGGAT  692

seq1  AAAACCAGTGGCCGCACATGGCTTAGTTTATTGCACAAATGGCTAAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGTGGCCGCACATGGCTTAGTTTATTGCACAAATGGCTAAGTAG  742

seq1  CTAAGAAGTGTTGTTGAGACTAACCCTGTACATGGAAAGGGGAGAGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGTGTTGTTGAGACTAACCCTGTACATGGAAAGGGGAGAGTTCC  792

seq1  GGTGACTGAGTAACGTGTCCTCTTCCCTACTCTGTCTGCTGTGGCACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTGAGTAACGTGTCCTCTTCCCTACTCTGTCTGCTGTGGCACTTG  842

seq1  GGTTCCGGTGTTCTAGCTATTCAAAGAAGAATTC  884
      ||||||||||||||||||||||||||||||||||
seq2  GGTTCCGGTGTTCTAGCTATTCAAAGAAGAATTC  876

seq1: chrX_130857498_130858446
seq2: B6Ng01-036D12.g_71_1004

seq1  GAATTCTGTCTATTCCATGGAAAATGAGGCATCACTGAAAATGATCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTATTCCATGGAAAATGAGGCATCACTGAAAATGATCTTTT  50

seq1  AAATAGTATAAAATAGAATAAAATGCTTTAAAGTGGGAAACCAGGACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTATAAAATAGAATAAAATGCTTTAAAGTGGGAAACCAGGACAAA  100

seq1  AGTTTCAAAAATGTACTTATGTGTATTTGTGTGCACCTGAGTGTATATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAAAATGTACTTATGTGTATTTGTGTGCACCTGAGTGTATATCT  150

seq1  TCGCACCTTCTGCAGACAGGAACCCAAGAAAGTCAGAGTGGGCATTAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACCTTCTGCAGACAGGAACCCAAGAAAGTCAGAGTGGGCATTAGGT  200

seq1  CTCTTGGAACTAGAGTTACAGATGATTTTGAGCCACTTTGTTGTGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGAACTAGAGTTACAGATGATTTTGAGCCACTTTGTTGTGTGCTG  250

seq1  GAAATCAAACTGGAATCCTTTGGAAGAACAAGTGCTTGTAGCCTCTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAACTGGAATCCTTTGGAAGAACAAGTGCTTGTAGCCTCTGAGC  300

seq1  CATCACTCTAGCCCCAAGGATAAAAGTTTTAATTTTGTATCTTAGTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTCTAGCCCCAAGGATAAAAGTTTTAATTTTGTATCTTAGTGTCT  350

seq1  TAGGTAGGGTTTCTATTGTGTGAAGAGACACCATGACCAAGGCAACTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGGGTTTCTATTGTGTGAAGAGACACCATGACCAAGGCAACTCTT  400

seq1  TTTTTCATAGCATTTTATATATTTAAACAACAATTTATATGGCTATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATAGCATTTTATATATTTAAACAACAATTTATATGGCTATATAA  450

seq1  TTCCTTAGTATTTTTCTACACTATTACTTAAGTTTCTCTATTTTTGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGTATTTTTCTACACTATTACTTAAGTTTCTCTATTTTTGAAGC  500

seq1  AACATT-AAAATA-TTTTAATGTAC-TTTTACATGT-AACTTTGTTTTCA  546
      |||||| |||||| ||||||||||| |||||||||| || ||||||||||
seq2  AACATTAAAAATATTTTTAATGTACTTTTTACATGTAAATTTTGTTTTCA  550

seq1  ATTACCAGAATACTCTTTGTTTC-TTTTTTTTTTTTTATTTTTTTTTTTT  595
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTACCAGAATACTCTTTGTTTCTTTTTTTTTTTTTTATTTTTTTTTTTT  600

seq1  TAAAGATTTATTTATTTATT-ATATGTAAGTACATTGTAGCTGTCTTCAG  644
      ||||||||| ||| |||||| || |||||| |||||| ||||||||||| 
seq2  TAAAGATTT-TTTTTTTATTAATTTGTAAG-ACATTGGAGCTGTCTTCAA  648

seq1  ACACACCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACC  694
      || ||||| || ||||||||||| ||||||||||||||| ||||||| ||
seq2  ACCCACCAAAAAAGGGAGTCAGAACTCGTTACGGATGGTGGTGAGCCCCC  698

seq1  ATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTC-GGGT  743
      ||| |||| |||||||||||| || |||||||||||| | ||||| ||||
seq2  ATGGGGTTCCTGGGATTTGAAATCCGGACCTTCGGAAAAACAGTCGGGGT  748

seq1  GCTCTAACCCACTGAGCCATCTCACCAGCCCTCTTTGTTTCTTATATATA  793
      | || |||||| |||||||| |||||||||| | ||| |||||||||| |
seq2  GTTCAAACCCA-TGAGCCAT-TCACCAGCCC-CCTTGGTTCTTATATAAA  795

seq1  ACTTCCATTTTATTTTATTATTGTTTTACCTATTCACTTTACATCCCACT  843
      |||||||||||||||| |||||| ||||||||||| | ||||| ||| | 
seq2  ACTTCCATTTTATTTT-TTATTGGTTTACCTATTC-CCTTACACCCCTC-  842

seq1  CACTGCCCCCCGCCCCTTCTGGTCATCCCCTCCTACAATCTTTCCTCCTG  893
        ||| |||||||||||| ||| ||  ||| || | ||| ||||| || |
seq2  --CTGGCCCCCGCCCCTTTTGGGCA--CCCCCCCATAAT-TTTCC-CCGG  886

seq1  TCCCCTTCCCCTTCTCCTCTGAGTGGATGGGGCCCCCTGAGTAGCCTCCA  943
      | ||||||||| || ||| |||| ||| ||||||||||||  ||||||  
seq2  T-CCCTTCCCC-TCCCCT-TGAG-GGAAGGGGCCCCCTGA--AGCCTC--  928

seq1  ACCTTG  949
      ||||||
seq2  ACCTTG  934