BAC Information

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BAC

Clone NameB6Ng01-037P09
ChromosomeX (Build37)
Map Location 84,597,075 - 84,697,908
singlet/doubletdoublet
Overlap geneIl1rapl1
Upstream geneEG629374, EG637027
Downstream geneLOC667876, EG667883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037P09.bB6Ng01-037P09.g
ACCDH865669DH865670
length1,1621,189
definitionDH865669|Mus musculus domesticus DNA, BAC clone: B6Ng01-037P09, 5' end.DH865670|Mus musculus domesticus DNA, BAC clone: B6Ng01-037P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,597,075 - 84,598,255)(84,696,684 - 84,697,908)
sequence
gaattcacctaattaaatttcaaaagccttatcacaagactatctgctat
ttgtcacctatgttcttgagtatctggtaccatgtaaagattccataaat
acaaatgaagttttccaattgatcatgatattttttcactgagtatatgt
cctttttgatcttaagctgatattctggcaaaaatgtgacaaggatagat
tttctgtataaatatcaccatgacaggaccaacatgtcattgtgcatttc
ctcctgacagtccatatcagggtttaatatacctgaagaaataactcata
aatattatctctatggtgtaagaagatacatcatgttacaaatcaaccat
gtgcataaaactagtattttatgaatgtattttttcaacttgtcatcata
catttccttctgtcagtccatactcagagtgtagtattcttgaagaaaat
agttcccataaaaattgaattttgggcccaagaatatacatcatatttac
aaatgagtatgtccacacctaattcaacaaatacataccacctaattctc
taatccagtggttcacacccttcctaataatgcaacatgttagcacactt
ctttttttttgcgggggggggttcgaacagggtttctctgtattgccctg
gctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaat
ccgcctgcctctgccaccccaagtgctggaattaaaggcatgagccacca
tgcctggctcattagcacacttcttaatgtagtgccgtccaaccataaaa
ttattttcattactactttataactataatttttgttactattttgaatc
acagtgtaaaatatctgagatgcaggatatttgacaggcaacctctgtga
aaggattattgggccttctaaaggggtcatgaaccacagttgagatttct
gctaatccattcagcatcactttctggttagaaacattcaatatttaaac
atattgtggtcatcttatctaacaaccacaacagttatctagatgtccca
cagtatgtggacaggatttgattttctgttataaattcgccatgaagacc
aaaggttcaaatgtgcattcctcctgaaatccatatcaggttaattcgag
aatactcataaa
gaattctaatcctggaaacatttattttggataataaatagaaaaatagt
agaaaatcatccattttctggaatgattaaaagtctaggccaaaaaaaat
gaaatgaaatttaaattactataggataggaagtaggcaaaattaaattg
tgttatataatccctgtattgcaatacagtatgatgttcactgacatgta
gaaagataaagcacagatttatttatatttttgaatatgcactgttttgt
cccataagaatatatagtggtatataatttgttcagatttagtattgatt
ttttcattgatcttgtatttatattcagcatagaatcataaatgtgtcct
aagttgaattgagtgttctaggcactcctaacaaagtacatcaaaacaaa
ccagaaaacatgaaattccattatatatattatatttcaatataaaaata
tgtagagaattctaaggaacaaaagaaaaacatagacaatgtatgtggag
ataaatcaggagcacacgcacacacacatacacatacacacacacacaca
tatatatatatatacatatataatatttcatttaaagagccatacatgta
tatgacgtagatgatggcatcatatcatagaatgctaaaaataagactgc
ctccagattgattattttggaaaaatttagacaagatgaaggcaaaatcc
agatagccacatagagaaaaaaaattataggtcaaacaaaggaaatacaa
aaaaacaaggtaaaaagcttgtgtttcaggaacaacaaaggctcatattc
gttgggagaaatgctaaatataaacagggagaggcatgatgagtttgcca
aagctaaagtaggacattgatgagcagaatatttgagcatggattttcat
caatagcatatatacaatgtaatgtaatgagtgcattagatatcagagca
atgaaaaaatatggagcagaaaaaaagatgcatgcagattgtacccacac
tgcaccacacactgctgtggcttcttatgtacaaaggatattatgcatcc
aaaccaaattttaattttatcactttaaccctgaattagccacctctcat
ctcttccagaatcagtgcctgcacataagtgtcgtgaactagtggtgctc
atggagatcgaagtcctgtgaagtcctcattccctctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_84597075_84598255
seq2: B6Ng01-037P09.b_49_1210

seq1  GAATTCACCTAATTAAATTTCAAAAGCCTTATCACAAGACTATCTGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAATTAAATTTCAAAAGCCTTATCACAAGACTATCTGCTAT  50

seq1  TTGTCACCTATGTTCTTGAGTATCTGGTACCATGTAAAGATTCCATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACCTATGTTCTTGAGTATCTGGTACCATGTAAAGATTCCATAAAT  100

seq1  ACAAATGAAGTTTTCCAATTGATCATGATATTTTTTCACTGAGTATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAAGTTTTCCAATTGATCATGATATTTTTTCACTGAGTATATGT  150

seq1  CCTTTTTGATCTTAAGCTGATATTCTGGCAAAAATGTGACAAGGATAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGATCTTAAGCTGATATTCTGGCAAAAATGTGACAAGGATAGAT  200

seq1  TTTCTGTATAAATATCACCATGACAGGACCAACATGTCATTGTGCATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTATAAATATCACCATGACAGGACCAACATGTCATTGTGCATTTC  250

seq1  CTCCTGACAGTCCATATCAGGGTTTAATATACCTGAAGAAATAACTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACAGTCCATATCAGGGTTTAATATACCTGAAGAAATAACTCATA  300

seq1  AATATTATCTCTATGGTGTAAGAAGATACATCATGTTACAAATCAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATCTCTATGGTGTAAGAAGATACATCATGTTACAAATCAACCAT  350

seq1  GTGCATAAAACTAGTATTTTATGAATGTATTTTTTCAACTTGTCATCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAAAACTAGTATTTTATGAATGTATTTTTTCAACTTGTCATCATA  400

seq1  CATTTCCTTCTGTCAGTCCATACTCAGAGTGTAGTATTCTTGAAGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTTCTGTCAGTCCATACTCAGAGTGTAGTATTCTTGAAGAAAAT  450

seq1  AGTTCCCATAAAAATTGAATTTTGGGCCCAAGAATATACATCATATTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCATAAAAATTGAATTTTGGGCCCAAGAATATACATCATATTTAC  500

seq1  AAATGAGTATGTCCACACCTAATTCAACAAATACATACCACCTAATTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTATGTCCACACCTAATTCAACAAATACATACCACCTAATTCTC  550

seq1  TAATCCAGTGGTTCACACCCTTCCTAATAATGCAACATGTTAGCACACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGTGGTTCACACCCTTCCTAATAATGCAACATGTTAGCACACTT  600

seq1  CTTTTTTTTTGCGGGGGGGGGTTCGAACAGGGTTTCTCTGTATTGCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTGCGGGGGGGGGTTCGAACAGGGTTTCTCTGTATTGCCCTG  650

seq1  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  700

seq1  CCGCCTGCCTCTGCCACCCCAAGTGCTGGAATTAAAGGCATGAGCCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGCCTCTGCCACCCCAAGTGCTGGAATTAAAGGCATGAGCCACCA  750

seq1  TGCCTGGCTCATTAGCACACTTCTTAATGTAGTGCCGTCCAACCATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCTCATTAGCACACTTCTTAATGTAGTGCCGTCCAACCATAAAA  800

seq1  TTATTTTCATTACTACTTTATAACTATAA-TTTTGTTACTATTTTGAATC  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTATTTTCATTACTACTTTATAACTATAATTTTTGTTACTATTTTGAATC  850

seq1  ACAGTGT-AAATATCTGAGATGCAGGATATTTGACAGGCAACCTCTGTGA  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTAAAATATCTGAGATGCAGGATATTTGACAGGCAACCTCTGTGA  900

seq1  AAGGATTATT-GGCCTTCTAAAGGGGTCATGAACCACAGGTTGAGAATTT  947
      |||||||||| ||||||||||||||||||||||||||| |||||| ||||
seq2  AAGGATTATTGGGCCTTCTAAAGGGGTCATGAACCACA-GTTGAG-ATTT  948

seq1  CTGCTAATCCATTCAGCATCACTTTCTGGTTAAGAAACATTCAAATATAT  997
      ||||||||||||||||||||||||||||||| |||||||||| ||||| |
seq2  CTGCTAATCCATTCAGCATCACTTTCTGGTT-AGAAACATTC-AATATTT  996

seq1  AAACATATTGTGGTCATTCTTATCTAAACAACCACAACAAGTTTATCTAG  1047
      |||||||||||||||| |||||||| |||||||||||||   ||||||||
seq2  AAACATATTGTGGTCA-TCTTATCT-AACAACCACAACA--GTTATCTAG  1042

seq1  ATGGTTCCACAGTAATTGTGACAAGAATTGATTTTCTG-TATAAATATCG  1096
      || || ||||||||  || |||| || ||||||||||| ||||||| |||
seq2  AT-GTCCCACAGTATGTG-GACAGGATTTGATTTTCTGTTATAAAT-TCG  1089

seq1  CCATGACAGGACCAAAGTGTC-AATGTGCATTTCCTCCTGAAAATCCATA  1145
      |||||  | ||||||||  || |||||||| ||||||||| |||||||||
seq2  CCATG--AAGACCAAAGGTTCAAATGTGCA-TTCCTCCTG-AAATCCATA  1135

seq1  TCAGGGTTTAATATACCTGAAGAAATAACTCATAAA  1181
      |||||  |||||     |  ||||   |||||||||
seq2  TCAGG--TTAAT-----TCGAGAA--TACTCATAAA  1162

seq1: chrX_84696684_84697908
seq2: B6Ng01-037P09.g_71_1259 (reverse)

seq1  TCAGAGGGAATGGAGGACATCACAAGGCCTTCTGAATCTACCACAGAGCA  50
      ||||||||||| |||||| |||| ||| ||||   |||| |||  |||||
seq2  TCAGAGGGAAT-GAGGACTTCAC-AGGACTTC--GATCT-CCA-TGAGCA  44

seq1  ACACACATGAGTTCACAGACACTAAAGTAGCAAGCACAGGGCCTACTGGG  100
       |||     ||||||| |||||| | || ||| |||| |   ||    ||
seq2  CCAC----TAGTTCAC-GACACTTATGT-GCAGGCACTGATTCT----GG  84

seq1  AAGAGATGAAGAAGGTGGGCTATAATCAGGGTGTAAAGTGAATTAAAAAA  150
      |||||||||   |||| ||||| | ||||||| ||||||||  |||||  
seq2  AAGAGATGA--GAGGT-GGCTA-ATTCAGGGT-TAAAGTGA--TAAAA--  125

seq1  TTTAAAAATTTTGTGTTGGGATGCATTTATATCCTTTTGTACATA--GAG  198
       ||||||  |||| ||| ||||||| | |||||| ||||||||||   ||
seq2  -TTAAAA--TTTG-GTTTGGATGCA-TAATATCC-TTTGTACATAAGAAG  169

seq1  CCACAAGCAGTGTGTGGGTTGCAGGTTGGTGGGTAC-ATCTGCATGCATC  247
      |||| ||||||||||||  |||||    |||||||| |||||||||||||
seq2  CCAC-AGCAGTGTGTGG--TGCAG---TGTGGGTACAATCTGCATGCATC  213

seq1  -TTTTTTCTGCTCCATTATTTTTTCATTGCTCTGATTATCTAATGCACTC  296
       |||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  TTTTTTTCTGCTCCA-TATTTTTTCATTGCTCTGA-TATCTAATGCACTC  261

seq1  ATTACATTACATTGTATATATGCTATTTGATGAAAATCCATGCTCAAATA  346
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTACATTACATTGTATATATGCTA-TTGATGAAAATCCATGCTCAAATA  310

seq1  TTCTGCTCATCAATGTCCTACTTTAGCTTTGGCAAACTCATCATGCCTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCATCAATGTCCTACTTTAGCTTTGGCAAACTCATCATGCCTCT  360

seq1  CCCTGTTTATATTTAGCATTTCTCCCAACGAATATGAGCCTTTGTTGTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTATATTTAGCATTTCTCCCAACGAATATGAGCCTTTGTTGTTC  410

seq1  CTGAAACACAAGCTTTTTACCTTGTTTTTTTGTATTTCCTTTGTTTGACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACACAAGCTTTTTACCTTGTTTTTTTGTATTTCCTTTGTTTGACC  460

seq1  TATAATTTTTTTTCTCTATGTGGCTATCTGGATTTTGCCTTCATCTTGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTTTTTCTCTATGTGGCTATCTGGATTTTGCCTTCATCTTGTC  510

seq1  TAAATTTTTCCAAAATAATCAATCTGGAGGCAGTCTTATTTTTAGCATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTCCAAAATAATCAATCTGGAGGCAGTCTTATTTTTAGCATTC  560

seq1  TATGATATGATGCCATCATCTACGTCATATACATGTATGGCTCTTTAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATGATGCCATCATCTACGTCATATACATGTATGGCTCTTTAAAT  610

seq1  GAAATATTATATATGTATATATATATATATGTGTGTGTGTGTGTATGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTATATATGTATATATATATATATGTGTGTGTGTGTGTATGTGT  660

seq1  ATGTGTGTGTGCGTGTGCTCCTGATTTATCTCCACATACATTGTCTATGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGCGTGTGCTCCTGATTTATCTCCACATACATTGTCTATGT  710

seq1  TTTTCTTTTGTTCCTTAGAATTCTCTACATATTTTTATATTGAAATATAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTGTTCCTTAGAATTCTCTACATATTTTTATATTGAAATATAA  760

seq1  TATATATAATGGAATTTCATGTTTTCTGGTTTGTTTTGATGTACTTTGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAATGGAATTTCATGTTTTCTGGTTTGTTTTGATGTACTTTGTT  810

seq1  AGGAGTGCCTAGAACACTCAATTCAACTTAGGACACATTTATGATTCTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGCCTAGAACACTCAATTCAACTTAGGACACATTTATGATTCTAT  860

seq1  GCTGAATATAAATACAAGATCAATGAAAAAATCAATACTAAATCTGAACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATATAAATACAAGATCAATGAAAAAATCAATACTAAATCTGAACA  910

seq1  AATTATATACCACTATATATTCTTATGGGACAAAACAGTGCATATTCAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATACCACTATATATTCTTATGGGACAAAACAGTGCATATTCAAA  960

seq1  AATATAAATATATCTGTGCTTTATCTTTCTACATGTCAGTGAACATCATA  1046
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATAAATCTGTGCTTTATCTTTCTACATGTCAGTGAACATCATA  1010

seq1  CTGTATTGCAATACAGGGATTATATAACACAATTTAATTTTGCCTACTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGCAATACAGGGATTATATAACACAATTTAATTTTGCCTACTTC  1060

seq1  CTATCCTATAGTAATTTAAATTTCATTTCATTTTTTTTGGCCTAGACTTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTATAGTAATTTAAATTTCATTTCATTTTTTTTGGCCTAGACTTT  1110

seq1  TAATCATTCCAGAAAATGGATGATTTTCTACTATTTTTCTATTTATTATC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTCCAGAAAATGGATGATTTTCTACTATTTTTCTATTTATTATC  1160

seq1  CAAAATAAATGTTTCCAGGATTAGAATTC  1225
      |||||||||||||||||||||||||||||
seq2  CAAAATAAATGTTTCCAGGATTAGAATTC  1189