BAC Information

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BAC

Clone NameB6Ng01-038A07
ChromosomeX (Build37)
Map Location 149,501,584 - 149,654,803
singlet/doubletdoublet
Overlap geneEG385454, EG436240, Rragb
Upstream geneIqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412, LOC635396, EG667130, Shroom2, Gpr143, LOC100039874, LOC667147, EG624124, Usp51, LOC635253, Mageh1
Downstream geneKlf8, LOC100039932, EG635136, Ubqln2, Cypt3, LOC100039998, LOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2, 4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038A07.bB6Ng01-038A07.g
ACCDH865713DH865714
length7591,097
definitionDH865713|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A07, 5' end.DH865714|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,654,044 - 149,654,803)(149,501,584 - 149,502,689)
sequence
gaattccaccttaaagcctgcattatcttcagcatttcttcctgactaaa
gggaggggtagtcctattgtgtctcctttaaacatttggaaataggttca
gaaaggttaaaaaaaaacttgctccaaatggcagaagtaaaaatgtcctg
tgcggcaaacatggctaccaagctctccatccgtctattagcctgatgtt
gctattacacacttgcccgcgatctcactccatccatggtttccattagc
attgctctatgtgtttattgtcatgtctgaatttccttgacttgaacctt
ttttcctgagcatcagatctctatctgggccttccatttactcacctgcc
taaacccgtgttctcttttcctctcccacatctgagtaagtcacgctgac
tttacttctaatattttaaaataaaatgtatcattattattcttttttta
aagatttatttattattatatgtaagtacactgtagctgtcttcagacac
accagaagagggagtcagatcttgttacggatggttatgagcagccatgt
ggttgctgggatttgaactctggatcttcggaagagcagtcgggtgctct
tacccactgagccatctcttcagcccccattattattcttgatgcgcgcg
cacgtgtgtatgtgtgtgtgtgctcattccatggtgtgccccatggaggc
cagaggagatctttgtgtaattggttttacctagcctccgtttatgtaag
ttttggata
gaattctctcaaaccagcaccacttaaatgtgaatatcagacatttaaca
cagcaggtttctgaaatgaccatagatctagggcctaagagggagagtgg
ctagcctggtccttggatcctcttcctcccctggaaacctacttccatct
cttgaaaccagagataaaagagagataaattacagctgtcaacatttttc
tttatgtctggtatcccatctaagtcaaatgaaaggaaatagaacagttt
gcaggagaggtggaaacaatttgacaggagtatgtgtatacaaaaaattt
gtttcatttgaaattctctaagcttggtacattttaagatgtttcagttg
ttcaggtttgtctcttggagcagaaaccacataagatataattctttctg
gtatgaaatggattacatgaggcatgaaatacaaaaaaaaaaaattgttg
ctttcaaatgtttccttaaggaagattgaatctgctatgaacattagttt
cacatagactgaaataaacctctaaggtttgatcaacctaaagtgtgaca
tacaaaagcaaaagtgtcagccattgaacaagggtttaatttctttcata
gctgggatgtagtatgcagctgtgggtgagtaagcacgatttaaaagctg
ttgtgaacacaagccaacaagtaaagttgaaccactgactacagccaagt
gttatcccactagtgttccctctgggcagaggttgcctagttataaatta
tgtagaatccaacacatagaaagacatttaacctctacttaggtcataac
ttcctcatgtgattggtataaatggatacatagctgcctgtgacagcctt
atttggaatttgagatttcaaaagattgttgttctgccagttcgaagttc
ttggaactgagttggtgagttagtatgcaagtatcccttctccctctctg
ctgtcatttgtatgtttgggagaatccttgggattgaagtctgatttaca
aattatttaacttgaagttgttttttcatgccaacccatatatgtcatct
tggtacaagaacagggatcaaccttctttggaagtctacttacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_149654044_149654803
seq2: B6Ng01-038A07.b_48_806 (reverse)

seq1  TATCCAAAACTTACATAAACGGAGGCTAGGTAAGAACCAATTACACAAAG  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATCCAAAACTTACATAAACGGAGGCTAGGTAA-AACCAATTACACAAAG  49

seq1  ATCTCCTCTGGCCTCCATGGGGCACACCATGGAATGAGCACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCTGGCCTCCATGGGGCACACCATGGAATGAGCACACACACACA  99

seq1  TACACACGTGCGCGCGCATCAAGAATAATAATGGGGGCTGAAGAGATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACGTGCGCGCGCATCAAGAATAATAATGGGGGCTGAAGAGATGGC  149

seq1  TCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGATCCAGAGTTCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGATCCAGAGTTCAAAT  199

seq1  CCCAGCAACCACATGGCTGCTCATAACCATCCGTAACAAGATCTGACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCACATGGCTGCTCATAACCATCCGTAACAAGATCTGACTCC  249

seq1  CTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAATA  299

seq1  AATAAATCTTTAAAAAAAGAATAATAATGATACATTTTATTTTAAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTTAAAAAAAGAATAATAATGATACATTTTATTTTAAAATAT  349

seq1  TAGAAGTAAAGTCAGCGTGACTTACTCAGATGTGGGAGAGGAAAAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAAAGTCAGCGTGACTTACTCAGATGTGGGAGAGGAAAAGAGAA  399

seq1  CACGGGTTTAGGCAGGTGAGTAAATGGAAGGCCCAGATAGAGATCTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGTTTAGGCAGGTGAGTAAATGGAAGGCCCAGATAGAGATCTGATG  449

seq1  CTCAGGAAAAAAGGTTCAAGTCAAGGAAATTCAGACATGACAATAAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAAAAAGGTTCAAGTCAAGGAAATTCAGACATGACAATAAACAC  499

seq1  ATAGAGCAATGCTAATGGAAACCATGGATGGAGTGAGATCGCGGGCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCAATGCTAATGGAAACCATGGATGGAGTGAGATCGCGGGCAAGT  549

seq1  GTGTAATAGCAACATCAGGCTAATAGACGGATGGAGAGCTTGGTAGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATAGCAACATCAGGCTAATAGACGGATGGAGAGCTTGGTAGCCAT  599

seq1  GTTTGCCGCACAGGACATTTTTACTTCTGCCATTTGGAGCAAGTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCGCACAGGACATTTTTACTTCTGCCATTTGGAGCAAGTTTTTTT  649

seq1  TTAACCTTTCTGAACCTATTTCCAAATGTTTAAAGGAGACACAATAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTTTCTGAACCTATTTCCAAATGTTTAAAGGAGACACAATAGGAC  699

seq1  TACCCCTCCCTTTAGTCAGGAAGAAATGCTGAAGATAATGCAGGCTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTCCCTTTAGTCAGGAAGAAATGCTGAAGATAATGCAGGCTTTAA  749

seq1  GGTGGAATTC  760
      ||||||||||
seq2  GGTGGAATTC  759

seq1: chrX_149501584_149502689
seq2: B6Ng01-038A07.g_67_1163

seq1  GAATTCTCTCAAACCAGCACCACTTAAATGTGAATATCAGACATTTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAACCAGCACCACTTAAATGTGAATATCAGACATTTAACA  50

seq1  CAGCAGGTTTCTGAAATGACCATAGATCTAGGGCCTAAGAGGGAGAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGTTTCTGAAATGACCATAGATCTAGGGCCTAAGAGGGAGAGTGG  100

seq1  CTAGCCTGGTCCTTGGATCCTCTTCCTCCCCTGGAAACCTACTTCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGGTCCTTGGATCCTCTTCCTCCCCTGGAAACCTACTTCCATCT  150

seq1  CTTGAAACCAGAGATAAAAGAGAGATAAATTACAGCTGTCAACATTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAACCAGAGATAAAAGAGAGATAAATTACAGCTGTCAACATTTTTC  200

seq1  TTTATGTCTGGTATCCCATCTAAGTCAAATGAAAGGAAATAGAACAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCTGGTATCCCATCTAAGTCAAATGAAAGGAAATAGAACAGTTT  250

seq1  GCAGGAGAGGTGGAAACAATTTGACAGGAGTATGTGTATACAAAAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAGGTGGAAACAATTTGACAGGAGTATGTGTATACAAAAAATTT  300

seq1  GTTTCATTTGAAATTCTCTAAGCTTGGTACATTTTAAGATGTTTCAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTGAAATTCTCTAAGCTTGGTACATTTTAAGATGTTTCAGTTG  350

seq1  TTCAGGTTTGTCTCTTGGAGCAGAAACCACATAAGATATAATTCTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTTGTCTCTTGGAGCAGAAACCACATAAGATATAATTCTTTCTG  400

seq1  GTATGAAATGGATTACATGAGGCATGAAATACAAAAAAAAAAAATTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAATGGATTACATGAGGCATGAAATACAAAAAAAAAAAATTGTTG  450

seq1  CTTTCAAATGTTTCCTTAAGGAAGATTGAATCTGCTATGAACATTAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATGTTTCCTTAAGGAAGATTGAATCTGCTATGAACATTAGTTT  500

seq1  CACATAGACTGAAATAAACCTCTAAGGTTTGATCAACCTAAAGTGTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGACTGAAATAAACCTCTAAGGTTTGATCAACCTAAAGTGTGACA  550

seq1  TACAAAAGCAAAAGTGTCAGCCATTGAACAAGGGTTTAATTTCTTTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGCAAAAGTGTCAGCCATTGAACAAGGGTTTAATTTCTTTCATA  600

seq1  GCTGGGATGTAGTATGCAGCTGTGGGTGAGTAAGCACGATTTAAAAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATGTAGTATGCAGCTGTGGGTGAGTAAGCACGATTTAAAAGCTG  650

seq1  TTGTGAACACAAGCCAACAAGTAAAGTTGAACCACTGACTACAGCCAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACACAAGCCAACAAGTAAAGTTGAACCACTGACTACAGCCAAGT  700

seq1  GTTATCCCACTAGTGTTCCCTCTGGGCAGAGGTTGCCTAGTTATAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCACTAGTGTTCCCTCTGGGCAGAGGTTGCCTAGTTATAAATTA  750

seq1  TGTAGAATCCAACACATAGAAAGACATTTAACCTCTACTTAGGTCATAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATCCAACACATAGAAAGACATTTAACCTCTACTTAGGTCATAAC  800

seq1  TTCCTCATGTGATTGGTATAAATGGATACATAGCTGCCTGTGACAGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATGTGATTGGTATAAATGGATACATAGCTGCCTGTGACAGCCTT  850

seq1  ATTTGGAAATTTGAGATTTCAAAAGATTGTTGTTCTGCCAGTTCGAAGGT  900
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTTGG-AATTTGAGATTTCAAAAGATTGTTGTTCTGCCAGTTCGAA-GT  898

seq1  TCTTGGAACTGAGTTGGTGAGTTAGTATGCAAGTATCCCTTCTCCCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAACTGAGTTGGTGAGTTAGTATGCAAGTATCCCTTCTCCCTCTC  948

seq1  TGCTGTCATTTGTAATGTTTGGGAGAATCCTTGGGATTGAAGTTCTGA-T  999
      ||||||||||||| |||||||||||||||||||||||||||| ||||| |
seq2  TGCTGTCATTTGT-ATGTTTGGGAGAATCCTTGGGATTGAAG-TCTGATT  996

seq1  TACAAATTATTTAACTTGGAAGTTTGTTTTTTCATTGCAAACCCATATAT  1049
      ||||||||||||||||| |||| ||||||||||| ||| |||||||||||
seq2  TACAAATTATTTAACTT-GAAG-TTGTTTTTTCA-TGCCAACCCATATAT  1043

seq1  GTCATCTTGGTACCAAGACCAGGGATCACACTCCTATTGGAAGTCATACT  1099
      |||||||||||| ||||| |||||||||  || || ||||||||| ||||
seq2  GTCATCTTGGTA-CAAGAACAGGGATCAACCTTCT-TTGGAAGTC-TACT  1090

seq1  TACATTT  1106
      |||||||
seq2  TACATTT  1097