BAC Information

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BAC

Clone NameB6Ng01-039D20
ChromosomeX (Build37)
Map Location 87,537,991 - 87,637,783
singlet/doubletdoublet
Overlap genenone
Upstream genePet2, EG629419, 4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370
Downstream geneLOC194615, LOC629471, LOC100041815, Gm44, LOC670074, LOC667972, LOC667976, Mageb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039D20.bB6Ng01-039D20.g
ACCDH866563DH866564
length1,2151,016
definitionDH866563|Mus musculus domesticus DNA, BAC clone: B6Ng01-039D20, 5' end.DH866564|Mus musculus domesticus DNA, BAC clone: B6Ng01-039D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,636,545 - 87,637,783)(87,537,991 - 87,538,797)
sequence
gaattcaaattgtctcatagagacagatgtgacagaacagccaggcaaca
gttgggcatgttctaacttcatcctcattttcctttattttctaccttta
tctctattttctgaaatttctaaaaacttggatcatattaacatattcct
atgatatcagtgtgagccacactaacacctataatcatctctaaatgtgt
tttgttatgtgaaccgcaatgtataaagtatttctcaggcttggtttaca
gcatatgtgatgtgaacatttaatcaaattgtgaatagataaaaatcaag
agaaagccagagagagagagagagagactggtaccttctaaaatgatgag
attgaatgcatctgtttagaattaatataagccccaaacctttccttata
ctagtgaggaaaagaaagtaatttatttgtgtttcaggctcaggaaacag
tataggttatctcctttacaaatttcatcccagagcttctgctgtcctga
tattggactgttgtatgttccatattccttacaatgtgttatcatctgtc
atctctgattttatggttttattttcacctttaaatgtgcccaaataaga
ttgagttatccctaaagaacctagcacttttatgtattttgcttaatata
agtacattgtcagaagtctgtatgattcatgtgtgtttttttttctatgc
caacacgtagagtacatgaattagcagctgtgatatgaaccaatttgatt
gaaataagaatgagagttaggctatcatcatcagcattgacactttaagg
aatcaagaccaacaaatatataaaatactttgtacaataaataacacata
aattttatcattagtgtgatttctagacttctcctctctctctctctttc
tcaggagtggtggtggagaattatgttagtaaaaaaaatagttgtcttca
cattcacattattttatgaaaaatgagagataggaaatcatggatatgtc
caatatactaatgatgaaaatacatttttattttaggctattctaaattt
attagtataaggtagccaaaattccatatttccttctaaggtgtataaaa
gatgaggttaatcgcaagtattggaattgcttctgggtgatggtcactta
cacgcattcttgaccagttctggcactaggacctgagccaatccggattt
tgcactgctagctct
gaattcttaaattaggaggtcttttttgttgttgtttgtttgtttgtttg
ttttttgtttgttttgaagtttctttgacagttatgccaatctcttctac
tgtatcttttacacctgagattctctcttctatctcttgtattctggtgg
taacacttatatctataattcttgacctctttcctaggttttccatttcc
aggtttgcctccatgtttgttttctttattgtttctacttctatttttag
gtcttggagcactttattcaattctttcacctgtttgcctgtgtttttct
ctatttctttcagtgaggtattgatatcctccttaaaggacactattatg
tatgttcatcatataggatttcaggacatattcctgattttcatgtgtgt
tggtgtattcagggcttgctgttgtgggagaactgggatgtggtgatgcc
catttgtttttactcctgttgcttatggtcatgcacttgcatttcaccat
ctgaatattcctggtatttgttgatgtgggttgctttaggtctcctggta
ggcttacagccctggctgtatcacaccacctgtggggccttccaactgga
ggctcttcacaggggcaaagaagctgctgatctattattgccctgactac
agtagatatcctgggaggctttcagactgttttgtcttccatggagccat
caagctgttgtccaattgcgctgagtgctgttgttcctcaactgctctga
aagcaacagatactcaactgctctgagttgcagagagtcttcaacttctt
aacttctctgagtacacagtttttcctaaaacctctctaatatattagaa
ttgagataatatgttgttattttgtcaaatacacaggtaggaggtataga
ggagggcaatcagaccaatcagaccttataaaggaggaatattggacatg
tagaagagaaataatattggtaaatgaaataatccactttaaacatattg
agatccccacttacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_87636545_87637783
seq2: B6Ng01-039D20.b_44_1258 (reverse)

seq1  AGAGCTAGCAATGCAAAAATATCCGCTTATTGCCTCAGGTGC-ATTGACT  49
      |||||||||| ||||||   |||||   |||| ||||||| | | ||   
seq2  AGAGCTAGCAGTGCAAA---ATCCG--GATTGGCTCAGGTCCTAGTG---  42

seq1  CAAGAACTGGGTCAGAGAATGCTGTTAAAGTAGCAATCAACAAAGAAGCA  99
      | |||||| ||||| ||||||| ||  ||||  | ||| ||  |||||||
seq2  CCAGAACT-GGTCA-AGAATGC-GTGTAAGTGACCATC-ACCCAGAAGCA  88

seq1  ATTCTCAATTACCTTGCGATTAACTGTCATCTTTTTTATACACCTTTAGG  149
      |||| ||||   ||||||||||||  |||||  |||||||||||||   |
seq2  ATTC-CAAT--ACTTGCGATTAAC-CTCATC--TTTTATACACCTT--AG  130

seq1  AAAGAAATATGGAATTTTGGCTACCTTAATACTTATTAAATTTAGAATTA  199
      || |||||||||||||||||||||||| |||| || ||||||||||| ||
seq2  AAGGAAATATGGAATTTTGGCTACCTT-ATAC-TAATAAATTTAGAA-TA  177

seq1  GCTTAATAT-AAAATGTAATTTTCATCATTAGTATATTTGACATATCCAT  248
      || ||| || ||||||| |||||||||||||||||||| |||||||||||
seq2  GCCTAAAATAAAAATGT-ATTTTCATCATTAGTATATTGGACATATCCAT  226

seq1  GATTTTCCTATCTCTCATTTTTCATAAATTAATGTGAATGTGAAGACAAC  298
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GA-TTTCCTATCTCTCATTTTTCATAAAATAATGTGAATGTGAAGACAAC  275

seq1  TATTTTTTTTACTAACATAAATTCTCCACCACCACTCCTGAGAAAGAGAG  348
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATTTTTTTTACTAACAT-AATTCTCCACCACCACTCCTGAGAAAGAGAG  324

seq1  AGAGAGAGGAGAAGTCTAGAAATCACACTAATGATAAAATTTATGTGTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGAGAAGTCTAGAAATCACACTAATGATAAAATTTATGTGTTA  374

seq1  TTTATTGTACAAAGTATTTTATATATTTGTTGGTCTTGATTCCTTAAAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTACAAAGTATTTTATATATTTGTTGGTCTTGATTCCTTAAAGT  424

seq1  GTCAATGCTGATGATGATAGCCTAACTCTCATTCTTATTTCAATCAAATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGCTGATGATGATAGCCTAACTCTCATTCTTATTTCAATCAAATT  474

seq1  GGTTCATATCACAGCTGCTAATTCATGTACTCTACGTGTTGGCATAGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATATCACAGCTGCTAATTCATGTACTCTACGTGTTGGCATAGAAA  524

seq1  AAAAAACACACATGAATCATACAGACTTCTGACAATGTACTTATATTAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACACATGAATCATACAGACTTCTGACAATGTACTTATATTAAG  574

seq1  CAAAATACATAAAAGTGCTAGGTTCTTTAGGGATAACTCAATCTTATTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACATAAAAGTGCTAGGTTCTTTAGGGATAACTCAATCTTATTTG  624

seq1  GGCACATTTAAAGGTGAAAATAAAACCATAAAATCAGAGATGACAGATGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTTAAAGGTGAAAATAAAACCATAAAATCAGAGATGACAGATGA  674

seq1  TAACACATTGTAAGGAATATGGAACATACAACAGTCCAATATCAGGACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATTGTAAGGAATATGGAACATACAACAGTCCAATATCAGGACAG  724

seq1  CAGAAGCTCTGGGATGAAATTTGTAAAGGAGATAACCTATACTGTTTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTCTGGGATGAAATTTGTAAAGGAGATAACCTATACTGTTTCCT  774

seq1  GAGCCTGAAACACAAATAAATTACTTTCTTTTCCTCACTAGTATAAGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGAAACACAAATAAATTACTTTCTTTTCCTCACTAGTATAAGGAA  824

seq1  AGGTTTGGGGCTTATATTAATTCTAAACAGATGCATTCAATCTCATCATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGGGCTTATATTAATTCTAAACAGATGCATTCAATCTCATCATT  874

seq1  TTAGAAGGTACCAGTCTCTCTCTCTCTCTCTCTGGCTTTCTCTTGATTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGTACCAGTCTCTCTCTCTCTCTCTCTGGCTTTCTCTTGATTTT  924

seq1  TATCTATTCACAATTTGATTAAATGTTCACATCACATATGCTGTAAACCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTCACAATTTGATTAAATGTTCACATCACATATGCTGTAAACCA  974

seq1  AGCCTGAGAAATACTTTATACATTGCGGTTCACATAACAAAACACATTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGAAATACTTTATACATTGCGGTTCACATAACAAAACACATTTA  1024

seq1  GAGATGATTATAGGTGTTAGTGTGGCTCACACTGATATCATAGGAATATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATTATAGGTGTTAGTGTGGCTCACACTGATATCATAGGAATATG  1074

seq1  TTAATATGATCCAAGTTTTTAGAAATTTCAGAAAATAGAGATAAAGGTAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGATCCAAGTTTTTAGAAATTTCAGAAAATAGAGATAAAGGTAG  1124

seq1  AAAATAAAGGAAAATGAGGATGAAGTTAGAACATGCCCAACTGTTGCCTG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGGAAAATGAGGATGAAGTTAGAACATGCCCAACTGTTGCCTG  1174

seq1  GCTGTTCTGTCACATCTGTCTCTATGAGACAATTTGAATTC  1239
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTGTCACATCTGTCTCTATGAGACAATTTGAATTC  1215

seq1: chrX_87537991_87538797
seq2: B6Ng01-039D20.g_281_1081

seq1  TTTGTTTTCTTTATTGTTTCTACTTCTATTTTTAGGTCTTGGAGCACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCTTTATTGTTTCTACTTCTATTTTTAGGTCTTGGAGCACTTT  50

seq1  ATTCAATTCTTTCACCTGTTTGCCTGTGTTTTTCTCTATTTCTTTCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTCTTTCACCTGTTTGCCTGTGTTTTTCTCTATTTCTTTCAGTG  100

seq1  AGGTATTGATATCCTCCTTAAAGGACACTATTATGTATGTTCATCATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTGATATCCTCCTTAAAGGACACTATTATGTATGTTCATCATATA  150

seq1  GGATTTCAGGACATATTCCTGATTTTCATGTGTGTTGGTGTATTCAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCAGGACATATTCCTGATTTTCATGTGTGTTGGTGTATTCAGGGC  200

seq1  TTGCTGTTGTGGGAGAACTGGGATGTGGTGATGCCCATTTGTTTTTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTGTGGGAGAACTGGGATGTGGTGATGCCCATTTGTTTTTACTC  250

seq1  CTGTTGCTTATGGTCATGCACTTGCATTTCACCATCTGAATATTCCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTTATGGTCATGCACTTGCATTTCACCATCTGAATATTCCTGGT  300

seq1  ATTTGTTGATGTGGGTTGCTTTAGGTCTCCTGGTAGGCTTACAGCCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGATGTGGGTTGCTTTAGGTCTCCTGGTAGGCTTACAGCCCTGG  350

seq1  CTGTATCACACCACCTGTGGGGCCTTCCAACTGGAGGCTCTTCACAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCACACCACCTGTGGGGCCTTCCAACTGGAGGCTCTTCACAGGGG  400

seq1  CAAAGAAGCTGCTGATCTATTATTGCCCTGACTACAGTAGATATCCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGCTGCTGATCTATTATTGCCCTGACTACAGTAGATATCCTGGG  450

seq1  AGGCTTTCAGACTGTTTTGTCTTCCATGGAGCCATCAAGCTGTTGTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTCAGACTGTTTTGTCTTCCATGGAGCCATCAAGCTGTTGTCCAA  500

seq1  TTGCGCTGAGTGCTGTTGTTCCTCAACTGCTCTGAAAGCAACAGATACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCTGAGTGCTGTTGTTCCTCAACTGCTCTGAAAGCAACAGATACTC  550

seq1  AACTGCTCTGAGTTGCAGAGAGTCTTCAACTTCTTAACTTCTCTGAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCTGAGTTGCAGAGAGTCTTCAACTTCTTAACTTCTCTGAGTAC  600

seq1  ACAGTTTTTCCTAAAACCTCTCTAATATATTAGAATTGAGATAATATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTTCCTAAAACCTCTCTAATATATTAGAATTGAGATAATATGTT  650

seq1  GTTATTTTGTCAAAATACACAGGTAGGAGGTATAGAGGAGGGCAATCAGA  700
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTGTC-AAATACACAGGTAGGAGGTATAGAGGAGGGCAATCAGA  699

seq1  CCAATCAGACCTTAATAAAGGAGGAAATATTGAACATGTAGAAGAGAAAA  750
      ||||||||||||| |||||||||| ||||||| ||||||||||||| |||
seq2  CCAATCAGACCTT-ATAAAGGAGG-AATATTGGACATGTAGAAGAG-AAA  746

seq1  TAATATTGGTAAATGAAAATAATTCACTTTAGACATATTGAGATCCCCCA  800
      ||||||||||||||| ||||||| ||||||| |||||||||||| |||||
seq2  TAATATTGGTAAATG-AAATAATCCACTTTAAACATATTGAGAT-CCCCA  794

seq1  CTTACAC  807
      |||||||
seq2  CTTACAC  801