BAC Information

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BAC

Clone NameB6Ng01-040H08
ChromosomeX (Build37)
Map Location 30,563,418 - 30,743,103
singlet/doubletdoublet
Overlap geneLOC100040482, LOC629997, 1700017G21Rik
Upstream geneLOC664982, LOC100039212, EG664989, LOC664996, LOC100039467, LOC100039481, LOC100039224, LOC100039500, LOC100040448, LOC100040458, LOC100040467, EG546176
Downstream geneLOC665014, EG546205, LOC100040533, LOC100039328, LOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419, LOC100039429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040H08.bB6Ng01-040H08.g
ACCDH867420DH867421
length974429
definitionDH867420|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H08, 5' end.DH867421|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,563,418 - 30,564,299)(30,742,669 - 30,743,103)
sequence
gaattcctatagacgtttaggtatttctagccatttttactatattgatc
ctgttaatccatgagcatgggagatctttccaacttctgagatcttcttt
gatttccttcttcagagacttgaagttcttatcatacagatctttcactt
ccttagttagagtcacaccaatgtattttatattatttgtaactattgtg
aagggtgttgtttccctaatttctttctcagcctctttatcctttgtgta
gagaaaggccattgatttgtttgagttaattttatatccagctacttcac
tgaagttgtttatcagttttaggagttctctggtgaaacttttagtatca
cttatatatactattatgcatatgatagtatatatatactatgaatttat
gaaattcttaggctaatggatggatctgggagatataatcctgagtgagg
taacacaatcacaaaagaactcacctgatgtgcactcactcatacgtgga
tattagcccagaagctcagaatatccaagatacaatttgcaaaacacatc
aaactcaagaagaaggaagaccaaagtgtagacactttggtccttcttag
aaggggaaacaaaatgccaatggaagcagttacagagacaaagtgtgaag
cagggactgaaggaatgatcatccagagactgccctacctggggatccat
ccccaaaacaaacaccaaaactagacactattgtggatgccaacaagagc
ttgctgacaggagcctgatatagctgtctcctgagaggctctgccagtgc
ctgactaatacagaagtggatgctcacagtcatccattagaaggagcaca
ggatccccatttaaggagctaaagaaatttcccaagaagctgaaaggatt
tgcattcccctaggaggaacaacaatatgaatgaaccaccacccctaagc
tccctgggactaaacaaccaatca
acaggtttttatatttctgcactcagtttagggatgaaagctaagtcatt
ttattcctttctggaaaagcactacttaaatggcattcgtctttgtcata
taccctctaaatatcagggaacattggaggcacttcttttctattttttg
gtgtccaccctattatcagttttccattgcatgttcattgaggttagcca
gctcttttcttcctgatgcttcccactgagtatgaaataatgcaaggtag
tatgtttgtttgcttgcttgtatgtcactgtcaggacaagtttaatgtgt
cctatgccctatgtttgcacgtttatagaatttaacgtgttgagaggagg
agaaatgtaagcacacctttaccctcatgaaagagatgcacctagtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_30563418_30564299
seq2: B6Ng01-040H08.b_40_923

seq1  GAATTCCTATAAACGTTTAGGTATTTTTAGCCATTTTTACTATATTGATC  50
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  GAATTCCTATAGACGTTTAGGTATTTCTAGCCATTTTTACTATATTGATC  50

seq1  CTGTTAATCCATGAGCATGGGAGATCTTTCCAACTTCTGAGATCTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAATCCATGAGCATGGGAGATCTTTCCAACTTCTGAGATCTTCTTT  100

seq1  GATTTCTTTCTTCAGAGACTTGAAGTTCTTATCATACAGATCTTTCACTT  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTTCTTCAGAGACTTGAAGTTCTTATCATACAGATCTTTCACTT  150

seq1  CCTTAGTTAGAGTCACACCAATGTATTTTATATTATTTGTAACTATTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTTAGAGTCACACCAATGTATTTTATATTATTTGTAACTATTGTG  200

seq1  AAGGGTGTTGTTTCCCTAATTTCTTTCTCAGCCTCTTTATCCTTTGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTTGTTTCCCTAATTTCTTTCTCAGCCTCTTTATCCTTTGTGTA  250

seq1  GAGAAAGGCCATTGATTTGTTTGAGTTAATTTTATATCCAGCTACTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGCCATTGATTTGTTTGAGTTAATTTTATATCCAGCTACTTCAC  300

seq1  TGAAGTTGTTTATCAGCTTTAGGAGTTCTCTGGTGAAACTTTTAGTATCA  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGAAGTTGTTTATCAGTTTTAGGAGTTCTCTGGTGAAACTTTTAGTATCA  350

seq1  CTTATATATACTATTATGCATATGATAG--TATATATACTATGAATTTAT  398
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CTTATATATACTATTATGCATATGATAGTATATATATACTATGAATTTAT  400

seq1  GAAATTCTTAGGCTAATGGATGGATCTGTGAGATATAATCCTGAGTGAGG  448
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAATTCTTAGGCTAATGGATGGATCTGGGAGATATAATCCTGAGTGAGG  450

seq1  TAACACAATCACAAAAGAACTCACCTGATGTGCACTCACTCATACGTGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAATCACAAAAGAACTCACCTGATGTGCACTCACTCATACGTGGA  500

seq1  TATTAGCCCAGAAGCTCAGAATATCCAAGATACAATTTGCAAAACACATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCCAGAAGCTCAGAATATCCAAGATACAATTTGCAAAACACATC  550

seq1  AAACTCAAGAAGAAGGAAGACCAAAGTGTAGACACTTTGGTCCTTCTTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAGAAGAAGGAAGACCAAAGTGTAGACACTTTGGTCCTTCTTAG  600

seq1  AAGGGGAAACAAAATGCCAATGGAAGCAGTTACAGAGACAAAGTGTGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAACAAAATGCCAATGGAAGCAGTTACAGAGACAAAGTGTGAAG  650

seq1  CAGGGACTGAAGGAATGATCATCCAGAGACTGCCCTACCTGGGGATCCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTGAAGGAATGATCATCCAGAGACTGCCCTACCTGGGGATCCAT  700

seq1  CCCCAAAACAAACACCAAAACTAGACACTATTGTGGATGCCAACAAGAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAACAAACACCAAAACTAGACACTATTGTGGATGCCAACAAGAGC  750

seq1  TTGCTGACAGGAGCCTGATATAGGTGTCTCCTGAGAGGCTCTGCCAGTGC  798
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGTGC  800

seq1  CTGACTAATACAGAAGTAGATGCTCACAGTCATCCATTAGAAGGAGCACA  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGACTAATACAGAAGTGGATGCTCACAGTCATCCATTAGAAGGAGCACA  850

seq1  GGATCCCCATTGAAGGAGCTAAAGAAAGTTCCCA  882
      ||||||||||| ||||||||||||||| ||||||
seq2  GGATCCCCATTTAAGGAGCTAAAGAAATTTCCCA  884

seq1: chrX_30742669_30743103
seq2: B6Ng01-040H08.g_70_504 (reverse)

seq1  CACACACACACACACACACACACACACACACACACTAGGTGCATCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACACACACACACACACACACACACACACACACACTAGGTGCATCTCTTT  50

seq1  CATGAGGGTAAAGGTGTGCTTACATTTCTCCTCCTCTCAACACGTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGGTAAAGGTGTGCTTACATTTCTCCTCCTCTCAACACGTTAAAT  100

seq1  TCTATAAACGTGCAAACATAGGGCATAGGACACATTAAACTTGTTCTGAC  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTATAAACGTGCAAACATAGGGCATAGGACACATTAAACTTGTCCTGAC  150

seq1  AGTGACATACAAGCAAGCAAACAAACATACTACCTTGCATTATTTCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATACAAGCAAGCAAACAAACATACTACCTTGCATTATTTCATAC  200

seq1  TCAGTGGGAAGCATCAGGAAGAAAAGAGCTGGCTAATCTCAATGAACATG  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAGTGGGAAGCATCAGGAAGAAAAGAGCTGGCTAACCTCAATGAACATG  250

seq1  CAATGGAAAACTGATAATAGGGTGGACACCAAAAAATAGAAAAGAAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAATGGAAAACTGATAATAGGGTGGACACCAAAAAATAGAAAAGAAGTGC  300

seq1  CTCCAATGTTCCCTGATATTTAGAGGGTATATGACAAAGACGAATGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATGTTCCCTGATATTTAGAGGGTATATGACAAAGACGAATGCCAT  350

seq1  TTAAATAGTGCTTTTCCAGAAAGGAAGAAAATGACTTAGCTTTCATCCCT  400
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAAGTAGTGCTTTTCCAGAAAGGAATAAAATGACTTAGCTTTCATCCCT  400

seq1  AAACTGAGTGAAGAAATATAAAAACCTGTGAATTC  435
      |||||||||| ||||||||||||||||||||||||
seq2  AAACTGAGTGCAGAAATATAAAAACCTGTGAATTC  435