MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-043I05
Chromosome	X (Build37)
Map Location	24,789,587 - 24,790,729
singlet/doublet	singlet
Overlap gene	LOC100038968
Upstream gene	LOC100043957, LOC100043206, LOC669000, LOC629204, EG546272, LOC100043216, EG546282, LOC100040417, LOC100040428, LOC100040433, Xmr
Downstream gene	LOC100038977, LOC100038997, LOC664810, EG382275, LOC100039030, LOC100039065
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100043957 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043957
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	LOC100043206 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043206
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	LOC669000 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669000
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC629204 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629204
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, 5 Proteins pseudo : _no_value

name	EG546272 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546272 MGI:3643862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 11 ESTs, 5 Proteins

name	LOC100043216 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 7 ESTs, 5 Proteins

name	EG546282 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546282 MGI:3646322
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040417 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 5 Proteins pseudo : _no_value

name	LOC100040428 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040428
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 66 ESTs

name	LOC100040433 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040433
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins pseudo : _no_value

name	Xmr (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:382277
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038968 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 5 Proteins pseudo : _no_value

name	LOC100038977 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 3 ESTs, 5 Proteins

name	LOC100038997 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins

name	LOC664810 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664810
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins pseudo : _no_value

name	EG382275 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382275 MGI:3703318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039030 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 9 ESTs, 5 Proteins

name	LOC100039065 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 13 ESTs, 5 Proteins

name	LOC100043957 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271064 GeneID:100043957
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : similar to XMR transcript_id : XM_001481261.1

name	LOC100043206 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271013 GeneID:100043206
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100043206 transcript_id : XM_001478415.1

name	EG546272 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94406980 GeneID:546272 MGI:3643862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 5 Proteins product : predicted gene, EG546272, transcript variant 2 transcript_id : XM_620960.3

name	EG546272 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271016 GeneID:546272 MGI:3643862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 5 Proteins product : predicted gene, EG546272, transcript variant 1 transcript_id : XM_001478430.1

name	LOC100043216 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271020 GeneID:100043216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 6 ESTs, 5 Proteins product : hypothetical protein LOC100043216, transcript variant 2 transcript_id : XM_001478456.1

name	LOC100043216 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271018 GeneID:100043216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 6 ESTs, 5 Proteins product : hypothetical protein LOC100043216, transcript variant 1 transcript_id : XM_001478447.1

name	EG546282 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126090645 GeneID:546282 MGI:3646322
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG546282 transcript_id : NM_001081657.1

name	LOC100040428 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271221 GeneID:100040428
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 66 ESTs product : hypothetical protein LOC100040428 transcript_id : XM_001474898.1

name	Xmr (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:100816606 GeneID:382277
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Xmr protein transcript_id : NM_001040669.1

name	LOC100038977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271231 GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 3 ESTs, 5 Proteins product : hypothetical protein LOC100038977, transcript variant 2 transcript_id : XM_001472083.1

name	LOC100038977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271229 GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 5 Proteins product : hypothetical protein LOC100038977, transcript variant 1 transcript_id : XM_001472060.1

name	LOC100038997 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271233 GeneID:100038997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins product : similar to XMR transcript_id : XM_001472117.1

name	EG382275 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801953 GeneID:382275 MGI:3703318
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG382275 transcript_id : NM_001025607.2

name	LOC100039030 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271240 GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 9 ESTs, 5 Proteins product : similar to Xmr protein, transcript variant 2 transcript_id : XM_001472195.1

name	LOC100039030 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271238 GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs, 5 Proteins product : similar to Xmr protein, transcript variant 1 transcript_id : XM_001472174.1

name	LOC100039065 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271246 GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 12 ESTs, 5 Proteins product : similar to Sycp3 like X-linked, transcript variant 2 transcript_id : XM_001472332.1

name	LOC100039065 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271244 GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 5 Proteins product : similar to Sycp3 like X-linked, transcript variant 1 transcript_id : XM_001472304.1

name	LOC100043957 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271065 GeneID:100043957
definition	codon_start : 1 product : similar to XMR protein_id : XP_001481311.1

name	LOC100043206 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271014 GeneID:100043206
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478465.1

name	EG546272 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271017 GeneID:546272 MGI:3643862
definition	codon_start : 1 product : similar to XMR isoform 1 protein_id : XP_001478480.1

name	EG546272 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83000007 GeneID:546272 MGI:3643862
definition	codon_start : 1 product : similar to XMR isoform 2 protein_id : XP_620960.2

name	LOC100043216 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271019 GeneID:100043216
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001478497.1

name	LOC100043216 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271021 GeneID:100043216
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001478506.1

name	EG546282 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126090646 GeneID:546282 MGI:3646322
definition	codon_start : 1 note : novel protein similar to Xlr-related, meiosis regulated (Xmr) product : hypothetical protein LOC546282 protein_id : NP_001075126.1

name	LOC100040428 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271222 GeneID:100040428
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474948.1

name	Xmr (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:100816607 GeneID:382277
definition	codon_start : 1 product : Xmr protein protein_id : NP_001035759.1

name	LOC100038977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271230 GeneID:100038977
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001472110.1

name	LOC100038977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271232 GeneID:100038977
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001472133.1

name	LOC100038997 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271234 GeneID:100038997
definition	codon_start : 1 product : similar to XMR protein_id : XP_001472167.1

name	EG382275 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71037366 GeneID:382275 MGI:3703318
definition	codon_start : 1 note : novel protein similar to Xlr-related, meiosis regulated (Xmr) product : similar to XMR protein_id : NP_001020778.1

name	LOC100039030 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271239 GeneID:100039030
definition	codon_start : 1 product : similar to Xmr protein isoform 1 protein_id : XP_001472224.1

name	LOC100039030 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271241 GeneID:100039030
definition	codon_start : 1 product : similar to Xmr protein isoform 2 protein_id : XP_001472245.1

name	LOC100039065 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271245 GeneID:100039065
definition	codon_start : 1 product : similar to Sycp3 like X-linked isoform 1 protein_id : XP_001472354.1

name	LOC100039065 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271247 GeneID:100039065
definition	codon_start : 1 product : similar to Sycp3 like X-linked isoform 2 protein_id : XP_001472382.1

name	LOC669000 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669000
definition	number : 1 pseudo : _no_value

name	LOC669000 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669000
definition	number : 2 pseudo : _no_value

name	LOC669000 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669000
definition	number : 3 pseudo : _no_value

name	LOC669000 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669000
definition	number : 4 pseudo : _no_value

name	LOC669000 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669000
definition	number : 5 pseudo : _no_value

name	LOC669000 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669000
definition	number : 6 pseudo : _no_value

name	LOC669000 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669000
definition	number : 7 pseudo : _no_value

name	LOC669000 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669000
definition	number : 8 pseudo : _no_value

name	LOC629204 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271015 GeneID:629204
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, 5 Proteins product : hypothetical LOC629204 pseudo : _no_value transcript_id : XR_035701.1

name	LOC100040417 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271220 GeneID:100040417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 5 Proteins product : similar to XMR pseudo : _no_value transcript_id : XR_031969.1

name	LOC100040433 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271223 GeneID:100040433
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins product : similar to Xlr-like pseudo : _no_value transcript_id : XR_031984.1

name	LOC100038968 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271228 GeneID:100038968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 5 Proteins product : similar to Sycp3 like X-linked pseudo : _no_value transcript_id : XR_030540.1

name	LOC664810 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271237 GeneID:664810
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins product : hypothetical LOC664810 pseudo : _no_value transcript_id : XR_001649.2

clone name	MSMg01-304I16
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-221E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105E11
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-043I05.b	B6Ng01-043I05.g
ACC	DH869553	DH869554
length	1,130	980
definition	DH869553\|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I05, 5' end.	DH869554\|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I05, 3' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattctttaatataacccttattacttattttttttaaattttatttta tgggtatgtttgttttgcttgattgtgtgtatgtacacagcttgtatgtc ttgtacctgaggaggccagatgtagacattgaattccctggaactggagt tataggttgtgagcaaccttgtggatgctgggaatccattctcagatctc tggaagggaaccagtgctcttaactgatgaatcatctcaccaatcccctc actgatttttataaaatgaattatgtaactgaaagtgaaagacaaattta ctaaccagtgagggaatgaaactcagatcccaaagaatctattttaaatt atatgtaattgaatgttgcatgagctttcttagaggacaataatttgtct ttgatatatagtctcactatgtatgtcaggctgggtggaattttcctatg taacctatgttgtcctttacactggaaatctcctgctaagcttcctagac taggatcatagacccaaaacgtcttacatggcttaagaaacaatgctctt aatacctatttttcagacatatttgtgtattagtgttttgcttacaggta tatatgtgcaccacatatgtgcctgttgcccatagatataagatgattat ttcagaaaccttggacctggagtcacataaagagaaaacacatggaaact tatatcaaagattctttcaaaaaaaaaagcaaccagacattagaatgact ttggcaaacgaacaaatgggagaggtagagttgttagtttggtagggtca catttgtatgatttaaaaattatatgtggctgaagtttaaaaaaaaatcc attactgagcttttagtaaaatgtgtgtctttgattttgtctaagcagtt aaccctataacttcatgccttcaaggaaactaaatctaattcttagaatc tgtgaaaatttttatttctactttaagtaccttgttaatgagattttaaa tttgatttacattcattgtgaaacaagaagtcttgccacaaaatcttaga aattaattgtttgttattatgtttaacaatatgggaaatcaattacattt gcgacatttgtattttaatgactaatgttt	gaattctttgtttagctctgagccccatttttaatgcggttatttgatgg atacttcaatgcatcttagaagttgggaacaaaagagcgatggaagtagt tacagagacaaaatgtggaatggagactgaagaaatgaccatcaagagac tgatttacctggggattcatctgtgatggtttgtatattcttggaccagg gagtggcaccatttggaagtgtggccttgtttgaataggtgtgacatggt tggagtaggtgtgtcactgtggttttgggcataagatcctcaccttagtt tcctggaagtcagtcttccactagtagcctttggatgaagatgtagaact ctcagctcctcctgcaccatgcctgcctgaatgctgccatgctcccacct ttatggtaatgaattgaacctctgaatctataagccagccccaattaaat gttggtttttgataagacttgccttggtcatggtttatgttcacagccat aaaaccctaactactataccatctcatatacaatcaccaaacccagacac tgttgtggatgccaacaactgcttactgacaggagcctgatatagctctc tcctgacaggctctgccagaacctgacaaatacataagtggatcctcaca gccatgcacatagggtccccatttaagaagctagagaaaggacctaagga gctgaagagtttgatgacccataagaggaacaacaaaatgaactagccag tacccccagagctcccaggcactaaaccatcaaccaaagagcacatatgg tgagactcgtggttccagctgcatatacagaacagaatggcctagataga catcaatgtggggagaggcactttgtcctatgaatgttctatgactcaat gtggggggaatgccagggccaggaagctggagtggctgggttgataagca aggggagggaggaataagggggtggggttt
quality values	Open. Hide. 57 34 31 30 61 61 42 61 61 53 52 61 61 61 61 61 61 61 61 61 61 61 55 55 61 61 61 61 31 35 29 28 33 43 61 61 61 61 61 55 61 61 61 61 61 61 61 61 59 61 59 61 61 61 61 61 59 59 61 55 55 61 61 61 61 61 59 61 61 61 61 61 61 61 59 59 61 61 59 55 59 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 59 61 61 59 61 59 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 55 44 59 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 52 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 59 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 44 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 47 52 61 53 61 61 61 61 61 61 61 61 61 61 47 39 40 47 61 61 61 47 61 61 61 61 47 61 61 52 61 53 61 61 61 61 53 61 61 53 61 61 61 61 61 61 61 53 53 57 57 57 53 57 57 53 57 53 57 53 57 45 57 57 42 57 53 45 57 53 53 53 45 53 53 47 57 39 57 45 53 42 24 53 53 50 57 57 53 33 29 57 41 47 47 53 53 57 57 52 47 28 57 52 57 57 53 34 53 53 38 53 45 57 52 57 57 53 53 50 53 57 57 53 53 28 57 42 57 57 57 52 46 39 52 53 52 50 52 45 52 53 45 37 35 38 41 20 53 53 39 57 53 42 27 57 57 57 57 57 57 57 57 52 25 48 32 41 46 53 42 39 41 42 30 53 45 50 27 57 53 38 50 33 39 45 57 52 38 40 36 30 57 37 38 30 40 36 37 23 57 24 38 57 57 57 41 28 53 38 53 22 50 35 50 28 32 50 29 14 25 40 40 40 57 11 25 18 21 48 29 57 57 28 48 28 39 24 43 53 29 37 20 28 25 37 31 12 41 31 29 57 57 57 57 35 48 34 37 30 16 16 23 40 40 24 41 28 18 33 20 28 57 53 31 53 53 53 53 53 45 45 32 32 23 32 14 31 38 28 26 29 30 31 23 27 35 48 51 27 39 26 32 38 47 46 45 31 30 19 28 29 14 7 31 44 46 23 25 31 14 24 20 22 22 14 29 33 48 20 10 37 29 12 7 39 15 29 15 46 12 14 14 23 24 22 20 10 14 29 26 29 38 19 33 20 24 29 24 23 17 20 25 51 21 24 28 19 51 28 35 33 33 33 30 36 28 29 27 26 29 24 39 39 20 28 23 12 5 9 26 43 46 26 32 46 43 46 26 18 21 51 36 25 15 17 28 23 51 31 27 23 22 31 23 28 29 7 9 33 20 25 34 26 14 27 30 12 14 21 51 51 6 36 51 38 9 51 39 12 23 31 51 30 12 21 12 26 17 35 7 10 22 29 20 38 28 34 23 5 4 4 5 19 24 13 26 26 19 27 8 6 7 4 11 23 25 19 15 23 21 5 7 5 11 22 39 4 4 4 7 11 34 30 31 11 23 9 13 31 31 10 30 20 12 7 24 13 34 13 15 7 6 10 6 5 5 12 17 25 7 21 30 23 11 20 9 18 17 31 9 17 6 5 4 6 9 4 3 11 5 6 1 4 3 2 7 7 7 7 30 13 7 3 17 9 10 8 26 6 7 11 8 5 20 24	Open. Hide. 61 61 49 49 61 61 61 43 43 43 19 26 24 18 11 19 37 59 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 59 59 61 59 55 59 52 52 59 61 61 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 59 61 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 59 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 61 61 61 59 61 59 59 61 59 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 50 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 61 61 61 61 61 61 61 61 61 47 61 61 61 61 61 61 46 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 57 57 57 47 57 57 47 50 57 53 53 57 57 57 57 57 57 53 53 57 57 57 57 53 52 53 57 57 52 57 57 53 57 57 53 53 53 57 53 57 57 57 57 53 53 47 47 53 53 57 50 43 37 57 53 57 57 57 53 53 57 52 45 57 39 47 57 57 57 57 45 47 57 50 53 50 53 39 52 50 57 45 52 57 52 45 33 53 57 53 53 45 53 53 50 41 41 38 53 53 52 34 50 42 53 52 43 57 52 37 43 28 33 46 45 57 53 53 38 57 34 46 46 26 50 53 50 40 57 36 53 57 37 37 46 37 23 53 50 52 52 38 52 50 33 39 53 50 57 50 30 53 30 37 53 52 40 42 33 40 42 37 33 46 33 40 38 57 30 43 13 42 37 33 37 14 52 33 14 57 57 31 42 44 36 40 37 37 33 36 53 53 33 44 42 31 31 53 46 46 41 34 29 46 24 37 40 21 57 37 33 27 57 33 29 33 41 32 53 29 19 35 32 37 37 25 40 40 32 23 57 40 37 53 21 30 32 30 32 40 29 32 32 44 22 31 31 23 32 23 31 36 29 32 47 32 27 29 36 30 15 30 39 39 32 30 24 30 28 29 28 36 28 20 31 45 26 29 23 33 24 28 31 32 23 29 29 24 23 29 20 29 30 29 29 24 37 31 29 20 28 41 26 43 46 43 39 41 14 29 13 36 14 22 29 29 51 43 30 27 23 17 19 29 29 27 34 29 29 31 16 33 31 31 28 27 29 27 22 29 31 22 25 27 31 21 29 43 46 41 41 43 23 33 26 28 21 35 28 18 46 29 24 26 25 24 26 31 31 19 26 12 21 19 29 14 29 29 28 22 28 25 44 29 21 16 16 23 7 14 29 23 29 24 29 29 46 41 23 20 11 36 6 27 5 14 17 12 9 15 8 5 16 14 22 9 14 23 26 26 8 6 8 5

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_24789587_24790729
seq2: B6Ng01-043I05.b_45_1174 (reverse)

seq1  AAACATAAGTCAATTAAAATATACAAATTGTCTGCATATGTAATTGATTT  50
      |||||| |||| ||||||  ||||||| |||| ||| |||||||||| ||
seq2  AAACATTAGTC-ATTAAA--ATACAAA-TGTC-GCAAATGTAATTGA-TT  44

seq1  TTCCATATTGTTAAACATAATAAACAACAAATTACATTTCTAAGATTTTG  100
      | ||||||||||||||||||| |||||  ||||| |||||||||||||||
seq2  TCCCATATTGTTAAACATAAT-AACAAACAATTA-ATTTCTAAGATTTTG  92

seq1  T-GCAAGACTTCTGTGTTTCCACAATGAATGTAAATCAAATTTTAAAATC  149
      | ||||||||||| ||||| |||||||||||||||||||| |||||||||
seq2  TGGCAAGACTTCT-TGTTT-CACAATGAATGTAAATCAAA-TTTAAAATC  139

seq1  TCATTAAC-AGGTACTTAAAGTAGAAAATAAAAATTTTCACAGATTTCTA  198
      |||||||| ||||||||||||||| ||||||||||||||||||| |||||
seq2  TCATTAACAAGGTACTTAAAGTAG-AAATAAAAATTTTCACAGA-TTCTA  187

seq1  AGAATTAGATTTAGTTTCCTTGAAGGCATGAAGTTATAGGGTTAACTGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGATTTAGTTTCCTTGAAGGCATGAAGTTATAGGGTTAACTGCT  237

seq1  TAGACAAAATCAAAGACACACATTTTTACTAAAAGCTCAGTAATGGATTT  298
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAGACAAAATCAAAGACACACA-TTTTACTAAAAGCTCAGTAATGGATTT  286

seq1  TTTTTTAAACTTCAGCCACATATAATTTTTTAAATCATACAAATGTGACC  348
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTTTAAACTTCAGCCACATATAA-TTTTTAAATCATACAAATGTGACC  335

seq1  CTACCAAACTAACAACTCTACCTCTCCCATTTGTTCGTTTGCCAAAGTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAACTAACAACTCTACCTCTCCCATTTGTTCGTTTGCCAAAGTCA  385

seq1  TTCTAATGTCTGGTTGCTTTTTTTTTTGAAAGAATCTTTGATATAAGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGTCTGGTTGCTTTTTTTTTTGAAAGAATCTTTGATATAAGTTT  435

seq1  CCATGTGTTTTCTCTTTATGTGACTCCAGGTCCAAGGTTTCTGAAATAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTTTTCTCTTTATGTGACTCCAGGTCCAAGGTTTCTGAAATAAT  485

seq1  CATCTTATATCTATGGGCAACAGGCACATATGTGGTGCACATATATACCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATATCTATGGGCAACAGGCACATATGTGGTGCACATATATACCT  535

seq1  GTAAGCAAAACACTAATACACAAATATGTCTGAAAAATAGGTATTAAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAAAACACTAATACACAAATATGTCTGAAAAATAGGTATTAAGAG  585

seq1  CATTGTTTCTTAAGCCATGTAAGACGTTTTGGGTCTATGATCCTAGTCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTCTTAAGCCATGTAAGACGTTTTGGGTCTATGATCCTAGTCTA  635

seq1  GGAAGCTTAGCAGGAGATTTCCAGTGTAAAGGACAACATAGGTTACATAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTAGCAGGAGATTTCCAGTGTAAAGGACAACATAGGTTACATAG  685

seq1  GAAAATTCCACCCAGCCTGACATACATAGTGAGACTATATATCAAAGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCCACCCAGCCTGACATACATAGTGAGACTATATATCAAAGACA  735

seq1  AATTATTGTCCTCTAAGAAAGCTCATGCAACATTCAATTACATATAATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGTCCTCTAAGAAAGCTCATGCAACATTCAATTACATATAATTT  785

seq1  AAAATAGATTCTTTGGGATCTGAGTTTCATTCCCTCACTGGTTAGTAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGATTCTTTGGGATCTGAGTTTCATTCCCTCACTGGTTAGTAAAT  835

seq1  TTGTCTTTCACTTTCAGTTACATAATTCATTTTATAAAAATCAGTGAGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTCACTTTCAGTTACATAATTCATTTTATAAAAATCAGTGAGGG  885

seq1  GATTGGTGAGATGATTCATCAGTTAAGAGCACTGGTTCCCTTCCAGAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTGAGATGATTCATCAGTTAAGAGCACTGGTTCCCTTCCAGAGAT  935

seq1  CTGAGAATGGATTCCCAGCATCCACAAGGTTGCTCACAACCTATAACTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATGGATTCCCAGCATCCACAAGGTTGCTCACAACCTATAACTCC  985

seq1  AGTTCCAGGGAATTCAATGTCTACATCTGGCCTCCTCAGGTACAAGACAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGGAATTCAATGTCTACATCTGGCCTCCTCAGGTACAAGACAT  1035

seq1  ACAAGCTGTGTACATACACACAATCAAGCAAAACAAACATACCCATAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGTGTACATACACACAATCAAGCAAAACAAACATACCCATAAAA  1085

seq1  TAAAATTTAAAAAAAATAAGTAATAAGGGTTATATTAAAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTAAAAAAAATAAGTAATAAGGGTTATATTAAAGAATTC  1130

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information