BAC Information

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BAC

Clone NameB6Ng01-043O12
ChromosomeX (Build37)
Map Location 122,537,544 - 122,688,267
singlet/doubletdoublet
Overlap geneEG626048
Upstream geneEG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579, EG665611
Downstream geneLOC100040410, LOC100039903, LOC665679, 4932411N23Rik, Gm381, LOC100040472, Gm382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043O12.bB6Ng01-043O12.g
ACCDH869823DH869824
length1,1791,008
definitionDH869823|Mus musculus domesticus DNA, BAC clone: B6Ng01-043O12, 5' end.DH869824|Mus musculus domesticus DNA, BAC clone: B6Ng01-043O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,687,069 - 122,688,267)(122,537,544 - 122,538,452)
sequence
gaattcatcttcctgagttctttatatatattggatattagtctcatata
tgatttaggataggtaaagatcctttcctaatcttttagtggcctttttg
tcttattgacagtgtcttttgccttacaaaagctttgcaattttctgtgg
tccggtttgtggattctcgatctaacagcacaagccattcctcttatgtt
caagaatattccccctgtgcccatattttaatggctttgatccactttct
tctctataagtttcagtgtccctggttttatgtggagttccttcatcaac
ttagacttgagcttctttttctttcttttctggatatattggaatttttt
ctaatattcattgtagaagaatatgggaaatgttcataaaaacattccta
aatgttccataaccttcccaaacattgtctctagctggagaccaactgtt
taaatatattagcctactcaaaatattatatattcatatcataataagac
tgaagctatggtgacagctagaggcataaattgcttctgagtaaaaattt
cacacaaaattgacaactttgaccatagaacaggagctgagttaacatgt
cagtggtgggcataaatataccacctcctgtttaaacgtgtacattgtgt
ttaaactgtaagacagattttgcaacacctattcccttgtttctcttccc
aatatttcattattgaaaaaagcttctttgtctgaatttttttacttgtc
tatttggttgttatataggagataggtggccaggcatattacttctatga
cttctacctttgtgattgctagtcttagttgttaactttactgaataggg
aactaagtaaaagtgaaaagcactggatataactgtaagtaatttttggt
tcattgcctcatttgaggtctaaaacctatcctaactctgggccacatat
tctgtgctagcctatgtaaagcacatagaagcccctttggttttgcctgc
ttgtcttcattctcacagtatgtctgttatttgagttttaagtatatttt
ctttgagagtcaaatatatctgaaacttcctaggagttcagtctaagaca
gaagatctatgaattcctggacttctgaacatagacacttattttatacc
tggctctggaacacatggttaaatccctc
gaattcttatctcatgttaagcatgattatgccctggaaattaacatact
ttatttgcagttgtatgatggatactatgctaggcataactattgcttta
ctttggaaattaacataatataaggagatatgactgtatgtcttattgac
aagaggtagagttataatggctagtcttgtttgtaaccctgataatatta
ggaattcactaaaactctgggaatttggggcacctgtgaggaattttttt
tcctgatttgattatgtgagataggaagaccaaccccaaatgtagatcgt
ttgttctgttatagaaacaacactacaatatacatttcattgatgctagt
tttttaataaaagtgtgtagctaggactaaattctagtagtttcaatcaa
gatcgtttttatgatcttacattgtttctgtcttttattacagtgttccc
tgagcactgagggggagatttgatggtgacctcccttgtgggactgaatg
ttagaaggtccctcaggctttacatattatctggctgcaagtctctgtat
ttgtttccatctgctgcatgaggatacttctgtgatgatgaatgagcaag
atacagatctatgagtatagcaaaatgtcaacaggagtcatttatttgct
atactcctttagtagaatagtagtatttggtctttctctagatccctggc
atttctagtttcaagttcttggccattcaggcattgttgagtatggattc
cacttaatgatatctgtgattgtttgtatatgcttggcacagggaatggc
gctattaggagatgtggtcttggagtaggtgtgtcactataggtgtgggc
ttaataccttcatcttagctgtgaggaagtcagtcttccactagcagcct
tacagatgagatgtagtaatctcagctgtgccaactccatgcctgcttgg
atgctgtcatgtcccaccttgatgataatggactgaacatctgaacctgt
aagctagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_122687069_122688267
seq2: B6Ng01-043O12.b_47_1225 (reverse)

seq1  GAGGGATTTATACACTGTGGTCCAG-CCCAGGTATTTAAATGTAGATGTC  49
      |||||||||| ||  |||| |||||  ||||||||   ||  ||  ||||
seq2  GAGGGATTTA-ACCATGTGTTCCAGAGCCAGGTAT---AAAATAAGTGTC  46

seq1  TATGGTCAAAAAGTCAAGGAATCCAATAGATCTTCTGTCCACAGGACTGA  99
      |||| || | ||||| |||||| | ||||||||||||||     ||||||
seq2  TATGTTC-AGAAGTCCAGGAATTC-ATAGATCTTCTGTC--TTAGACTGA  92

seq1  ATTTCCCAGATGTTCTTCAG-TATGTTGGGCTCTCAAAG-AAATATACTT  147
      | | |   || ||  ||||| ||| || | ||||||||| |||||||| |
seq2  ACTCCTAGGAAGT--TTCAGATATATTTGACTCTCAAAGAAAATATAC-T  139

seq1  TAAAACCTTCAAAAGAACAAGCATACCTGTGAGAATGAAGACAAGCAGGC  197
      ||||||  || ||| ||||  |||| ||||||||||||||||||||||||
seq2  TAAAAC--TC-AAATAACAGACATA-CTGTGAGAATGAAGACAAGCAGGC  185

seq1  AAAAACCAAAGGGGTCTTCTATGTGCTTTACATAGGCTAGCACAAGAATA  247
       ||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  -AAAACCAAAGGGG-CTTCTATGTGCTTTACATAGGCTAGCAC-AGAATA  232

seq1  TGTGGCCCAGAGTTAGGATAGGTTTTTAGACCTCAAATGAGGCAAAGAAC  297
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  TGTGGCCCAGAGTTAGGATAGG-TTTTAGACCTCAAATGAGGCAATGAAC  281

seq1  CAAAAATCACTTATAGTTATATCCAGTGCTTTTCACTTTTACTTAGTTCC  347
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTACTTACAGTTATATCCAGTGCTTTTCACTTTTACTTAGTTCC  331

seq1  CTATTCAGTAAAGTTAACAACTAAGACTAGCAATCACAAAGGTAGAAGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGTAAAGTTAACAACTAAGACTAGCAATCACAAAGGTAGAAGTC  381

seq1  ATAGAAGTAATATGCCTGGCCACCTATCTCCTATATAACAACCAAATAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTAATATGCCTGGCCACCTATCTCCTATATAACAACCAAATAGA  431

seq1  CAAGTAAAAAAATTCAGACAAAGAAGCTTTTTTCAATAATGAAATATTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAAAAATTCAGACAAAGAAGCTTTTTTCAATAATGAAATATTGG  481

seq1  GAAGAGAAACAAGGGAATAGGTGTTGCGAACTCTGTCTTACAGTTTAAAC  547
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  GAAGAGAAACAAGGGAATAGGTGTTGCAAAATCTGTCTTACAGTTTAAAC  531

seq1  ACAATGTACACGTTTAAACAGGAGGTGGTATATTTATGCCCACCACTGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTACACGTTTAAACAGGAGGTGGTATATTTATGCCCACCACTGAC  581

seq1  ATGTTAACAAAGCTCCTGTTCTATGGTCAAAGTTGTCAATTTTGCGTGAA  647
      ||||||||  |||||||||||||||||||||||||||||||||| |||||
seq2  ATGTTAACTCAGCTCCTGTTCTATGGTCAAAGTTGTCAATTTTGTGTGAA  631

seq1  ATTTTTACTCAGAAGCAATTTATGCCTCTAGTTGTCACCATAGCTTCAGT  697
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTTTTACTCAGAAGCAATTTATGCCTCTAGCTGTCACCATAGCTTCAGT  681

seq1  CTTATTATGATTTGAATATAAAATATTTTGAGTAGGCTAATATATTTAAA  747
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  CTTATTATGATATGAATATATAATATTTTGAGTAGGCTAATATATTTAAA  731

seq1  CAGTTTGTCTCCAGCTAGAGACAATGTTTGGGAAGGTTATGGAACATTTA  797
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTCTCCAGCTAGAGACAATGTTTGGGAAGGTTATGGAACATTTA  781

seq1  GGAATGTTTTTACGAACAGTTCCCATATTGTTCTACAATGAATATTAGCC  847
      |||||||||||| ||||| |||||||||| ||||||||||||||||||  
seq2  GGAATGTTTTTATGAACATTTCCCATATTCTTCTACAATGAATATTAGAA  831

seq1  AAAAATCCAATATATCTAGAAAAGAAAGAAAAAGTAGCTCAATCAAGTCT  897
      |||| ||||||||||| ||||||||||||||||| |||    ||||||||
seq2  AAAATTCCAATATATCCAGAAAAGAAAGAAAAAGAAGC----TCAAGTCT  877

seq1  AAGTGGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGA  947
      |||| ||| |||||||||||||||||||||| ||||||||||||||||||
seq2  AAGTTGATGAAGGAACTCCACATAAAACCAGGGACACTGAAACTTATAGA  927

seq1  GAAGAAAGTGGATCAAAGCCATTAAGATATGGGCACAGGGGGAAAATTCT  997
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  GAAGAAAGTGGATCAAAGCCATTAAAATATGGGCACAGGGGGAATATTCT  977

seq1  TGAACAGAAGAGCAATGGCTTGTGCTGTAAGATTGAGAATCCACAAACCG  1047
      |||||| ||||| ||||||||||||||| |||| ||||||||||||||||
seq2  TGAACATAAGAGGAATGGCTTGTGCTGTTAGATCGAGAATCCACAAACCG  1027

seq1  GACCTCAGAAAATTGCAAAGATTCTGTAAGGCAAAAGACACAGTCAATAA  1097
      |||| ||||||||||||||| || ||||||||||||||||| ||||||||
seq2  GACCACAGAAAATTGCAAAGCTTTTGTAAGGCAAAAGACACTGTCAATAA  1077

seq1  GACAAAAAGGCCACTAAAAGATTAGGAAAGGATCTTTACCTATCCTAATT  1147
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACAAAAAGGCCACTAAAAGATTAGGAAAGGATCTTTACCTATCCTAAAT  1127

seq1  CATATATGAGACTAATATCCAATATATATAAAGAACTCAGGAAGATGAAT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGAGACTAATATCCAATATATATAAAGAACTCAGGAAGATGAAT  1177

seq1  TC  1199
      ||
seq2  TC  1179

seq1: chrX_122537544_122538452
seq2: B6Ng01-043O12.g_69_977

seq1  GAATTCTTATCTCATGTTAAGCATGATTATGCCCAAGAAATTCATATACT  50
      ||||||||||||||||||||||||||||||||||  |||||| | |||||
seq2  GAATTCTTATCTCATGTTAAGCATGATTATGCCCTGGAAATTAACATACT  50

seq1  TTATTTGCAGTTGTATATTGGATACTATGCTAATCATAACTATTGCTTTC  100
      ||||||||||||||||  ||||||||||||||  ||||||||||||||| 
seq2  TTATTTGCAGTTGTATGATGGATACTATGCTAGGCATAACTATTGCTTTA  100

seq1  CTTTGGAAATTAACATAATATAAGGAGATAAGATTGTATGTCTTATTGAC  150
      |||||||||||||||||||||||||||||| || ||||||||||||||||
seq2  CTTTGGAAATTAACATAATATAAGGAGATATGACTGTATGTCTTATTGAC  150

seq1  AAGAGGTAGACTTATGATGGCTAGTCTTGGTTGTAACCCTGATAATATTA  200
      |||||||||| |||| ||||||||||||| ||||||||||||||||||||
seq2  AAGAGGTAGAGTTATAATGGCTAGTCTTGTTTGTAACCCTGATAATATTA  200

seq1  GGAATTCACTAGAACTCTGAGAATTTGGGGCACCTGTGAGGAATTTTTTT  250
      ||||||||||| ||||||| ||||||||||||||||||||||| ||||||
seq2  GGAATTCACTAAAACTCTGGGAATTTGGGGCACCTGTGAGGAA-TTTTTT  249

seq1  TTCCTGATTTGATTATGTGAGATAGGAAGACCAACCCCAAATGTAGATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATTTGATTATGTGAGATAGGAAGACCAACCCCAAATGTAGATCG  299

seq1  TTTGTTTTGTTATAGAAACAACTCTACAATATAAATTTCATTGATGCTAG  350
      |||||| ||||||||||||||| |||||||||| ||||||||||||||||
seq2  TTTGTTCTGTTATAGAAACAACACTACAATATACATTTCATTGATGCTAG  349

seq1  TTTTTTAATAAAAGTGTGTAGCTAGGACTAAATTCTAGTA-TTTCAATCA  399
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTTTAATAAAAGTGTGTAGCTAGGACTAAATTCTAGTAGTTTCAATCA  399

seq1  AGATCGTTTTTATGATCTTACACTGTTTCTGTCTTTTATTACAGTGTTCC  449
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGATCGTTTTTATGATCTTACATTGTTTCTGTCTTTTATTACAGTGTTCC  449

seq1  CTGAGCACTGAGGGGGAGATTTGATGGTGACCTCCTTTGTGGGACTGAAT  499
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTGAGCACTGAGGGGGAGATTTGATGGTGACCTCCCTTGTGGGACTGAAT  499

seq1  GTTAGAAGGTCCCTCAGGCTTTGCATATTATCTGGCTGCAAGTCTCTGTA  549
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTTAGAAGGTCCCTCAGGCTTTACATATTATCTGGCTGCAAGTCTCTGTA  549

seq1  TTTGTTTCCATCTGCTGCATGAGGATACTTCTGTGATGATGAATGAGCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCATCTGCTGCATGAGGATACTTCTGTGATGATGAATGAGCAA  599

seq1  GATACAGATCTATGAGTATAGCAAAATGTCAACAGGAGTCATTTATTTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGATCTATGAGTATAGCAAAATGTCAACAGGAGTCATTTATTTGC  649

seq1  TATACTCCTTTAGTAGAATAGTAGTATTTGTTCTTTCTCTAGATCCCTGG  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATACTCCTTTAGTAGAATAGTAGTATTTGGTCTTTCTCTAGATCCCTGG  699

seq1  CATTTCTAGTTTCAGGTTCTTGGCCATTCAAGCATTGTTGAGTATGGATT  749
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  CATTTCTAGTTTCAAGTTCTTGGCCATTCAGGCATTGTTGAGTATGGATT  749

seq1  CCACTCAATGATATCTGTGATTGTTTGTATATGCTTGGCACAGGGAATGG  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAATGATATCTGTGATTGTTTGTATATGCTTGGCACAGGGAATGG  799

seq1  CACTATTAGGAGATGTGGTCTTGGAGTAGGTGTGTCACTATAGGTGTGGG  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTATTAGGAGATGTGGTCTTGGAGTAGGTGTGTCACTATAGGTGTGGG  849

seq1  CTTAATACCTTCATCTTAGCTGTGAGGAAGTCAGTCTTCCACTAGCAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACCTTCATCTTAGCTGTGAGGAAGTCAGTCTTCCACTAGCAGCC  899

seq1  TTACAGATGA  909
      ||||||||||
seq2  TTACAGATGA  909