BAC Information

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BAC

Clone NameB6Ng01-044B06
ChromosomeX (Build37)
Map Location 130,589,321 - 130,744,787
singlet/doubletdoublet
Overlap geneCstf2, Nox1, Xkrx, Arl13a
Upstream geneLOC665854, LOC100040794, Pcdh19, LOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889
Downstream gene4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941, Armcx1, LOC100040933, LOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987, Nxf2, B930008K04Rik, EG621246, LOC100040635, Tceal6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044B06.bB6Ng01-044B06.g
ACCDH869938DH869939
length3861,128
definitionDH869938|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B06, 5' end.DH869939|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,744,402 - 130,744,787)(130,589,321 - 130,590,453)
sequence
acagatggaagacaccgcggatgtgtgcagtaacctcacagtggagtggg
gtggtcctggactttctctgttggttaagaacagattcctgccacaaacg
acacatgccatgaagagacatgtgtagatggttaattctcttatcccagc
actcaggagacaaaagcaggcagatctcagggttcaaggccagcctggtc
tacagatcaagttccaggacagccagaggtacacatagaaaccctttctc
aaaaaaccaagccaaaccaactaaagaaagagagcatggtttattgaatt
gtctcctgtcttttttctgagacagggtttctctgtgtagccctggctgt
cctggaacttgatctgtagaccaggctggccttgaa
gaattcaaacaaaagagctcatgggcgacattttcattcaaactaccaca
attcttaaattctttgattctctgttaggggtattttctatctacttaaa
gttcctaagtaacaatcatcttatatatttgactccatttatatattagt
attttttgttagtattttcctacttcttactatcacatccatatttttgt
tattttagcccttaatcatagcagctgcaaaaggaccagacactccgttt
tgtgtcttcgctttggtaaaaatggatgacgaaaggaatgtcacacagga
agtatgtcaatgatgagaagattctccataggcaagcactgtgccaagag
taagtcacagcctatgcatgaaatccaaggaaaaaaagagaaagcatttt
ggatgcaccccttgcacacaccttcttttggataactactagagacggtg
tagctgctgatgttgttgggaacaagcaaaagacttattctgaggaatac
cattttgtttaaaggctccatttaaccatagggtgaaactaaattcaaag
ttccaggccctagcggatctggggacttccctgttgctgaacagcatctg
ttgtgaactgttgtatgataccagatatttaagggataatttgtaaagag
acagctgtttgagtacagccatcttaaggacaacatcttcatcacactgg
tgtagttcatgttcccaggcctaggaataaacacctatcccagttttcca
aatattttaattgtctgttaactggtaaagaatatagaaattgcggttac
ctaaaccaaggtgcataagttacaaaaatatataaccaattgcctgtcat
gccctaacccactacatgcagctgacccactcctttgtcttcttatcact
ctgaactctggacctaaagtctaagagaatgagttaagccccttgagcca
tataccctagatagcccagtcttccacccgtactcccttgctcaacccat
actatcagatatatttggataacacctgcagcacgccccccttccaaccc
tccctcagatgcctcttgctttgtggtctcatccttaaaaatgttggaca
atctccttccgggaatgcagttcagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_130744402_130744787
seq2: B6Ng01-044B06.b_49_434 (reverse)

seq1  TTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTAC  50
      ||| ||||||||||||||||||||   |||||||||||||||||||||||
seq2  TTCAAGGCCAGCCTGGTCTACAGATCAAGTTCCAGGACAGCCAGGGCTAC  50

seq1  ACAGAGAAACCCTGTCTCAGAAAAAAGACAGGAGACAATTCAATAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCAGAAAAAAGACAGGAGACAATTCAATAAACCA  100

seq1  TGCTCTCTTTCTTTAGTTGGTTTGGCTTGGTTTTTTGAGAAAGGGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTTCTTTAGTTGGTTTGGCTTGGTTTTTTGAGAAAGGGTTTCT  150

seq1  ATGTGTACCTCTGGCTGTCCTGGAACTTGATCTGTAGACCAGGCTGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACCTCTGGCTGTCCTGGAACTTGATCTGTAGACCAGGCTGGCCT  200

seq1  TGAACCCTGAGATCTGCCTGCTTTTGTCTCCTGAGTGCTGGGATAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCTGAGATCTGCCTGCTTTTGTCTCCTGAGTGCTGGGATAAGAGA  250

seq1  ATTAACCATCTACACATGTCTCTTCATGGCATGTGTCGTTTGTGGCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCATCTACACATGTCTCTTCATGGCATGTGTCGTTTGTGGCAGGA  300

seq1  ATCTGTTCTTAACCAACAGAGAAAGTCCAGGACCACCCCACTCCACTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCTTAACCAACAGAGAAAGTCCAGGACCACCCCACTCCACTGTG  350

seq1  AGGTTACTGCACACATCCGCGGTGTCTTCCATCTGT  386
      ||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTGCACACATCCGCGGTGTCTTCCATCTGT  386

seq1: chrX_130589321_130590453
seq2: B6Ng01-044B06.g_67_1194

seq1  GAATTCAAACAAAAGAGCTCATGGGCGACATTTTCATTCAAACTACCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAAAAGAGCTCATGGGCGACATTTTCATTCAAACTACCACA  50

seq1  ATTCTTAAATTCTTTGATTCTCTGTTAGGGGTATTTTCTATCTACTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAATTCTTTGATTCTCTGTTAGGGGTATTTTCTATCTACTTAAA  100

seq1  GTTCCTAAGTAACAATCATCTTATATATTTGACTCCATTTATATATTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAAGTAACAATCATCTTATATATTTGACTCCATTTATATATTAGT  150

seq1  ATTTTTTGTTAGTATTTTCCTACTTCTTACTATCACATCCATATTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTTAGTATTTTCCTACTTCTTACTATCACATCCATATTTTTGT  200

seq1  TATTTTAGCCCTTAATCATAGCAGCTGCAAAAGGACCAGACACTCCGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGCCCTTAATCATAGCAGCTGCAAAAGGACCAGACACTCCGTTT  250

seq1  TGTGTCTTCGCTTTGGTAAAAATGGATGACGAAAGGAATGTCACACAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTCGCTTTGGTAAAAATGGATGACGAAAGGAATGTCACACAGGA  300

seq1  AGTATGTCAATGATGAGAAGATTCTCCATAGGCAAGCACTGTGCCAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTCAATGATGAGAAGATTCTCCATAGGCAAGCACTGTGCCAAGAG  350

seq1  TAAGTCACAGCCTATGCATGAAATCCAAGGAAAAAAAGAGAAAGCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCACAGCCTATGCATGAAATCCAAGGAAAAAAAGAGAAAGCATTTT  400

seq1  GGATGCACCCCTTGCACACACCTTCTTTTGGATAACTACTAGAGACGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCACCCCTTGCACACACCTTCTTTTGGATAACTACTAGAGACGGTG  450

seq1  TAGCTGCTGATGTTGTTGGGAACAAGCAAAAGACTTATTCTGAGGAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCTGATGTTGTTGGGAACAAGCAAAAGACTTATTCTGAGGAATAC  500

seq1  CATTTTGTTTAAAGGCTCCATTTAACCATAGGGTGAAACTAAATTCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTTAAAGGCTCCATTTAACCATAGGGTGAAACTAAATTCAAAG  550

seq1  TTCCAGGCCCTAGCGGATCTGGGGACTTCCCTGTTGCTGAACAGCATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCCCTAGCGGATCTGGGGACTTCCCTGTTGCTGAACAGCATCTG  600

seq1  TTGTGAACTGTTGTATGATACCAGATATTTAAGGGATAATTTGTAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACTGTTGTATGATACCAGATATTTAAGGGATAATTTGTAAAGAG  650

seq1  ACAGCTGTTTGAGTACAGCCATCTTAAGGACAACATCTTCATCACACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTTTGAGTACAGCCATCTTAAGGACAACATCTTCATCACACTGG  700

seq1  TGTAGTTCATGTTCCCAGGCCTAGGAATAAACACCTATCCCAGTTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCATGTTCCCAGGCCTAGGAATAAACACCTATCCCAGTTTTCCA  750

seq1  AATATTTTAATTGTCTGTTAACTGGTAAAGAATATAGAAATTGCGGTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTAATTGTCTGTTAACTGGTAAAGAATATAGAAATTGCGGTTAC  800

seq1  CTAAACCAAGGTGCATAAGTTACAAAAATATATAACCAATTGCCTGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCAAGGTGCATAAGTTACAAAAATATATAACCAATTGCCTGTCAT  850

seq1  GCCCTAACCCACTACATGCAGCTGACCCACTCCTTTGTCTTCTTATCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAACCCACTACATGCAGCTGACCCACTCCTTTGTCTTCTTATCACT  900

seq1  CTGAACTCTGGACCTAAAGTCTAAGAGAATGAGTTAAGCCCCTTGAAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGAACTCTGGACCTAAAGTCTAAGAGAATGAGTTAAGCCCCTTG-AGCC  949

seq1  ATATACCCTAGATAAGGCCCAGTCTCCAACCCGTACTCCCTTGCTCAACC  1000
      ||||||||||||||  ||||||||| | ||||||||||||||||||||||
seq2  ATATACCCTAGATA--GCCCAGTCTTCCACCCGTACTCCCTTGCTCAACC  997

seq1  CAATACTATCAAGATATATTTGGATAACA-CTGCAGCACGCCCCCCCCTC  1049
      | |||||||| |||||||||||||||||| |||||||||| |||||| ||
seq2  C-ATACTATC-AGATATATTTGGATAACACCTGCAGCACG-CCCCCCTTC  1044

seq1  CCACCCTCCCCCAG-TGCCTCTTGCTTTGTGTTCTCATCCTTTAAAAATG  1098
      | |||||||| ||| |||||||||||||||| |||||||| |||||||||
seq2  CAACCCTCCCTCAGATGCCTCTTGCTTTGTGGTCTCATCC-TTAAAAATG  1093

seq1  TTGTACAATCTCCCTTCGGGAATGCAGTTCAGATC  1133
      ||| ||||||||| | |||||||||||||||||||
seq2  TTGGACAATCTCCTTCCGGGAATGCAGTTCAGATC  1128