BAC Information

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BAC

Clone NameB6Ng01-044F17
ChromosomeX (Build37)6 (Build37)
Map Location 36,339,200 - 36,339,58198,603,240 - 98,603,981
singlet/doubletsingletsinglet
Overlap geneLOC670539
Upstream gene4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171
Downstream geneLOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044F17.bB6Ng01-044F17.g
ACCDH870134DH870135
length1,164742
definitionDH870134|Mus musculus domesticus DNA, BAC clone: B6Ng01-044F17, 5' end.DH870135|Mus musculus domesticus DNA, BAC clone: B6Ng01-044F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,339,200 - 36,339,581)(98,603,240 - 98,603,981)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggaaacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gctcctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcttgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaatcc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgtgatga
aaggatggaccatctagagactgccatatccagggtccaccccataatca
gcttccaaacgctgacaccattgcatacactagcaagattttactgaaag
gacccagatgtagctgtctcttgtgagactatgccagggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcctaa
tggaggagctagagaaagtacccaaggagcttaatggatctgcaacccta
tagtggaacaacatatgactaaccagtatcctggagctcttgactcctag
ctgcatatgtatcaaagatgtctagtcgcatcactgggaaagaggcatgg
gcacgcaaattgatatgccagtacaggaacgccagggcaaaaaaaaaaaa
tggatagagtgggt
gaattcttattctttatttgggtttctgtttaccaacctcttgtccttgt
gatttctggattctggtcaggttccttggtttataaagaagctcaaaata
cccttccttgagtctacttgtaatactctctccagacctttaaatgctgt
tctagtggcccaaagcagttactgctcttcccactttaattttaggtact
acataagctacagcacaaaatctattattatgtaaattcatttacccaag
acaattcacagtccacatgaagctcaagaagaagaaagaccaaagtgtgg
atgcttcagtccttcttagaaagggaaataaaatacttacaggaacaaat
atggagataaagtgtagagcagagactgaaggaaacaccaaccagaactg
tcccacctggggattcatcccatatacagtcaccaaacccggacactatt
gtggataccaagaaatgcttgctaaaaaggagcctgatggagctgtctca
tgagagaccctgccacagccttacaaatacagaggcagatgctcgcagcc
agtcattggactgagcgaagggagttagagaaaggactgaaggaactgaa
ggggtgtgcaaccccataggaagaacaacactatcaaccaaccagacccc
tgccctgaactcccagggactgacgcaaaccaaggagtatacatggctcc
agctgcatatgtagcagaggatgactttgtcaggcatccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_36339200_36339581
seq2: B6Ng01-044F17.b_833_1206 (reverse)

seq1  ACCCACTCCCCC-------GTTTTTGGCCTTGGCGTTCCCCTGTACTGGG  43
      ||||||||   |        ||||| ||| |||||||  ||||||||  |
seq2  ACCCACTCTATCCATTTTTTTTTTTTGCCCTGGCGTT--CCTGTACT--G  46

seq1  GCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGA  93
      |||||| || |||||||| |||    |||||| || |||||||||  |||
seq2  GCATATCAA-TTTGCGTGCCCA---TGCCTCT-TTCCCAGTGATG--CGA  89

seq1  CTAGGCCATCTTTTGATACATATGCAGCTA-GAGTCAAGAGCTCCGGGGT  142
      ||| | |||| ||||||||||||||||||| |||||||||||||| || |
seq2  CTA-GACATC-TTTGATACATATGCAGCTAGGAGTCAAGAGCTCCAGGAT  137

seq1  ACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTA  192
      ||||||||| |||| ||||||||||| |||||||||||||||||| || |
seq2  ACTGGTTAG-TCAT-ATGTTGTTCCA-CTATAGGGTTGCAGATCCATTAA  184

seq1  GCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCAT  242
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTCCTTGGGTACTTTCTCTAGCTCCTCCATTAGGAGCCCTGTGATCCAT  234

seq1  CCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGCAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGCAT  284

seq1  AGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTA  342
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  AGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAGTAAAATCTTGCTA  334

seq1  GTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGG  382
      ||||||||||||||||||||||||||| ||||||||||||
seq2  GTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGG  374

seq1: chr6_98603240_98603981
seq2: B6Ng01-044F17.g_67_808

seq1  GAATTCTTATTCTTTATTTGGGTTTCTGTTTACCAACCTCTTGTCCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTCTTTATTTGGGTTTCTGTTTACCAACCTCTTGTCCTTGT  50

seq1  GATTTCTGGATTCTGGTCAGGTTCCTTGGTTTATAAAGAAGCTCAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGGATTCTGGTCAGGTTCCTTGGTTTATAAAGAAGCTCAAAATA  100

seq1  CCCTTCCTTGAGTCTACTTGTAATACTCTCTCCAGACCTTTAAATGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTGAGTCTACTTGTAATACTCTCTCCAGACCTTTAAATGCTGT  150

seq1  TCTAGTGGCCCAAAGCAGTTACTGCTCTTCCCACTTTAATTTTAGGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGGCCCAAAGCAGTTACTGCTCTTCCCACTTTAATTTTAGGTACT  200

seq1  ACATAAGCTACAGCACAAAATCTATTATTATGTAAATTCATTTACCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGCTACAGCACAAAATCTATTATTATGTAAATTCATTTACCCAAG  250

seq1  ACAATTCACAGTCCACATGAAGCTCAAGAAGAAGAAAGACCAAAGTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCACAGTCCACATGAAGCTCAAGAAGAAGAAAGACCAAAGTGTGG  300

seq1  ATGCTTCAGTCCTTCTTAGAAAGGGAAATAAAATACTTACAGGAACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCAGTCCTTCTTAGAAAGGGAAATAAAATACTTACAGGAACAAAT  350

seq1  ATGGAGATAAAGTGTAGAGCAGAGACTGAAGGAAACACCAACCAGAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATAAAGTGTAGAGCAGAGACTGAAGGAAACACCAACCAGAACTG  400

seq1  TCCCACCTGGGGATTCATCCCATATACAGTCACCAAACCCGGACACTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTGGGGATTCATCCCATATACAGTCACCAAACCCGGACACTATT  450

seq1  GTGGATACCAAGAAATGCTTGCTAAAAAGGAGCCTGATGGAGCTGTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATACCAAGAAATGCTTGCTAAAAAGGAGCCTGATGGAGCTGTCTCA  500

seq1  TGAGAGACCCTGCCACAGCCTTACAAATACAGAGGCAGATGCTCGCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACCCTGCCACAGCCTTACAAATACAGAGGCAGATGCTCGCAGCC  550

seq1  AGTCATTGGACTGAGCGAAGGGAGTTAGAGAAAGGACTGAAGGAACTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTGGACTGAGCGAAGGGAGTTAGAGAAAGGACTGAAGGAACTGAA  600

seq1  GGGGTGTGCAACCCCATAGGAAGAACAACACTATCAACCAACCAGACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTGCAACCCCATAGGAAGAACAACACTATCAACCAACCAGACCCC  650

seq1  TGCCCTGAACTCCCAGGGACTGACGCAAACCAAGGAGTATACATGGCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGAACTCCCAGGGACTGACGCAAACCAAGGAGTATACATGGCTCC  700

seq1  AGCTGCATATGTAGCAGAGGATGACTTTGTCAGGCATCCATG  742
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATATGTAGCAGAGGATGACTTTGTCAGGCATCCATG  742