BAC Information

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BAC

Clone NameB6Ng01-044M18
ChromosomeX (Build37)
Map Location 53,120,201 - 53,214,447
singlet/doubletdoublet
Overlap geneLOC666268, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825
Upstream geneLOC666135, LOC100038960, EG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666097
Downstream geneLOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044M18.bB6Ng01-044M18.g
ACCDH870448DH870449
length1,1241,060
definitionDH870448|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M18, 5' end.DH870449|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,213,323 - 53,214,447)(53,120,201 - 53,121,258)
sequence
gaattcagtggctctaattttttttttacctcacccctaatcacaccaaa
cgaaaaaataatactactgtccagctcctaagttctagtgggggttaacc
acacacatatgtgagggatatttagataaggacctggctcaggatgtggc
atgaactgagtatggatcctgcaataggaactcctgagacattccttatg
gcatccatctccttgtacagtgttattttcttagagaaaagctactagga
aggttacagcaaagacaaagtgctagaggtaggcatgaggacattacact
tagtgggtgtgacaaggtcaagagaggaaggattgtctgtgaaggttact
aagggacactcaaaactggaaggttttctcagggaaactgtagctgttcc
ccttttggggacctccatgcatttggaaacacatggatgccattattgtg
tgaggagtgggactagatgcctgcacctcttttagagtttcactgttctt
atcttataaaatgtgtatggatgttatattgtcctatgtgcatgactgac
tatatactacatgcttgcctggtgtctggagaggatagaagtgtttgagg
tatcccctagaacacgattagaaatggttgtgggcaccgtgtggatgttg
agaatcaaacctgggccctatggaagaacagacagtactctttttgtttt
tttgagacagggtttctctatatatccctgactgtcctggaactcacttt
gtagaccaggctggcctcaaactcagaaattcgcctgcctctgcctccca
agtgctgggattaaaagcgtgcgctaccaccagccagccagacaatactc
ttatcctaagagccagtttctagtccttgcgcctcttcagaaggataggt
gttcccagctgcagttcatgtgactgctcagaacatggctgcccaatagc
aggaatgttctgaggatacttgtggctaggaatccaagcttccagcttcc
actaattccaagttcagtagctacatggaggccagtggctaagctactag
aagcgcaggttccaggagtctgcaaaaaggggttggggcacactttggta
taccttttggccaccttggtgcag
gaattcaccgtgtagctatccatgaactcaaaaaatctgcctgcatctgc
ctcccaagaatgggtatgaaaggtgtgtgacaaccacatccagccttgat
tctggctctttgatagagtgtattcttgttgttgttgctcatttttttca
tataattagttacagcaatgcagtcaagcatccttacaactggagagtat
tctgtaaactacaaagtcctttcttatgtttttttccttgtgaaaaaaat
taaaggttctttttgtgacagagtttttcctgtccaatcacactaaaata
ttaggtagcaggaggcctgagatgggacaaggaaaagggaggcagcagtg
agagttgcaggggagagagagcatctggggtagagaggagaaggacaaga
tggaggcagaagtaaaccagtgtggctttaaacagccacaggtagttatg
atatcatgaggttaaaataattgagataaagcttttatcattttctgaaa
ttattgtattggcatcttgtaaattgagaacttattgatacataaatatg
agtcattaattataagcttcaagaggtttgatttacttggttgatgggtg
gtgtggtggctaaccatgtggtgtacgatccttgcatggtgcttttgtgg
tatagaagggaactttagctccagccacgccggagaattggccagcagaa
aaagaataccccagccttgccagagagacagcagaattgagatcacctgg
ctggaaccatgtggtctaccagttgctggcattaactcaggaagcctgct
gggccattttttagtatttcccgatacactttttgttctggcatcttgtt
tattagattatttttatgatctccaaatttaaagattatcttcagtagga
acatcagaattatagtaattttaggtagtctcattcacaatgcttaggaa
cacagattgtttcatataatttagaatttatttgactttggaaaatttct
ataaaacattactgcttgaataatctagtctaaaacctaaaagtggctta
taaaatataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_53213323_53214447
seq2: B6Ng01-044M18.b_46_1169 (reverse)

seq1  CTGCACCCAGCT-GCCAAAAGTTATA-CAAAGTGTGCCCCCAACCCCTTT  48
      ||||||| || | |||||||| |||| ||||||||||||| | ||| |||
seq2  CTGCACCAAGGTGGCCAAAAGGTATACCAAAGTGTGCCCCAACCCCTTTT  50

seq1  TGCAGACTCCTTGGACCTGCGCTTTCTAGTAGCTTAGCCACTGGCCT-CA  97
      ||||||||||| | |||||||| |||||||||||||||||||||||| ||
seq2  TGCAGACTCCTGGAACCTGCGC-TTCTAGTAGCTTAGCCACTGGCCTCCA  99

seq1  TGTAGCTACTGAACTTGGAATTAGTGGAAGCTGGAAGCTTGGATTCCTAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTACTGAACTTGGAATTAGTGGAAGCTGGAAGCTTGGATTCCTAG  149

seq1  CCACAAGTATTCCTTCAGAACATTCCCTGCTATTGGGCAGCCATGTTCTG  197
      ||||||||||  | |||||||||| |||||||||||||||||||||||||
seq2  CCACAAGTAT--CCTCAGAACATT-CCTGCTATTGGGCAGCCATGTTCTG  196

seq1  AGCAGTCCCATGAACTGCAGCTGGGAACACCTATCCTTCTGAAGAGGCGC  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCACATGAACTGCAGCTGGGAACACCTATCCTTCTGAAGAGGCGC  246

seq1  -AGGACTAGAAAACTGGCTCTTAGGATAAGAGTATTGTCTGGCTGGCTGG  296
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTAG-AAACTGGCTCTTAGGATAAGAGTATTGTCTGGCTGGCTGG  295

seq1  TGGTAGCGCACGCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCGCACGCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAA  345

seq1  TTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTC  395

seq1  AGGGATATATAGAGAAACCCTGTCTCAAAAAAACAAAAAGAGTACTGTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATATATAGAGAAACCCTGTCTCAAAAAAACAAAAAGAGTACTGTCT  445

seq1  GTTCTTCCATAGGGCCCAGGTTTGATTCTCAACATCCACACGGTGCCCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCCATAGGGCCCAGGTTTGATTCTCAACATCCACACGGTGCCCAC  495

seq1  AACCATTTCTAATCGTGTTCTAGGGGATACCTCAAACACTTCTATCCTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTCTAATCGTGTTCTAGGGGATACCTCAAACACTTCTATCCTCT  545

seq1  CCAGACACCAGGCAAGCATGTAGTATATAGTCAGTCATGCACATAGGACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACCAGGCAAGCATGTAGTATATAGTCAGTCATGCACATAGGACA  595

seq1  ATATAACATCCATACACATTTTATAAGATAAGAACAGTGAAACTCTAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACATCCATACACATTTTATAAGATAAGAACAGTGAAACTCTAAAA  645

seq1  GAGGTGCAGGCATCTAGTCCCACTCCTCACACAATAATGGCATCCATGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCAGGCATCTAGTCCCACTCCTCACACAATAATGGCATCCATGTG  695

seq1  TTTCCAAATGCATGGAGGTCCCCAAAAGGGGAACAGCTACAGTTTCCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAATGCATGGAGGTCCCCAAAAGGGGAACAGCTACAGTTTCCCTG  745

seq1  AGAAAACCTTCCAGTTTTGAGTGTCCCTTAGTAACCTTCACAGACAATCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCTTCCAGTTTTGAGTGTCCCTTAGTAACCTTCACAGACAATCC  795

seq1  TTCCTCTCTTGACCTTGTCACACCCACTAAGTGTAATGTCCTCATGCCTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTTGACCTTGTCACACCCACTAAGTGTAATGTCCTCATGCCTA  845

seq1  CCTCTAGCACTTTGTCTTTGCTGTAACCTTCCTAGTAGCTTTTCTCTAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGCACTTTGTCTTTGCTGTAACCTTCCTAGTAGCTTTTCTCTAAG  895

seq1  AAAATAACACTGTACAAGGAGATGGATGCCATAAGGAATGTCTCAGGAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACACTGTACAAGGAGATGGATGCCATAAGGAATGTCTCAGGAGT  945

seq1  TCCTATTGCAGGATCCATACTCAGTTCATGCCACATCCTGAGCCAGGTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTGCAGGATCCATACTCAGTTCATGCCACATCCTGAGCCAGGTCC  995

seq1  TTATCTAAATATCCCTCACATATGTGTGTGGTTAACCCCCACTAGAACTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAAATATCCCTCACATATGTGTGTGGTTAACCCCCACTAGAACTT  1045

seq1  AGGAGCTGGACAGTAGTATTATTTTTTCGTTTGGTGTGATTAGGGGTGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGGACAGTAGTATTATTTTTTCGTTTGGTGTGATTAGGGGTGAG  1095

seq1  GTAAAAAAAAAATTAGAGCCACTGAATTC  1125
      |||||||||||||||||||||||||||||
seq2  GTAAAAAAAAAATTAGAGCCACTGAATTC  1124

seq1: chrX_53120201_53121258
seq2: B6Ng01-044M18.g_70_1129

seq1  GAATTCACCGTGTAGCTATCCATGAACTCAAAAAATCTGCCTGCATCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGTGTAGCTATCCATGAACTCAAAAAATCTGCCTGCATCTGC  50

seq1  CTCCCAAGAATGGGTATGAAAGGTGTGTGACAACCACATCCAGCCTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGAATGGGTATGAAAGGTGTGTGACAACCACATCCAGCCTTGAT  100

seq1  TCTGGCTCTTTGATAGAGTGTATTCTTGTTGTTGTTGCTCATTTTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTTTGATAGAGTGTATTCTTGTTGTTGTTGCTCATTTTTTTCA  150

seq1  TATAATTAGTTACAGCAATGCAGTCAAGCATCCTTACAACTGGAGAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAGTTACAGCAATGCAGTCAAGCATCCTTACAACTGGAGAGTAT  200

seq1  TCTGTAAACTACAAAGTCCTTTCTTATGTTTTTTTCCTTGTGAAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAACTACAAAGTCCTTTCTTATGTTTTTTTCCTTGTGAAAAAAAT  250

seq1  TAAAGGTTCTTTTTGTGACAGAGTTTTTCCTGTCCAATCACACTAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTCTTTTTGTGACAGAGTTTTTCCTGTCCAATCACACTAAAATA  300

seq1  TTAGGTAGCAGGAGGCCTGAGATGGGACAAGGAAAAGGGAGGCAGCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAGCAGGAGGCCTGAGATGGGACAAGGAAAAGGGAGGCAGCAGTG  350

seq1  AGAGTTGCAGGGGAGAGAGAGCATCTGGGGTAGAGAGGAGAAGGACAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGCAGGGGAGAGAGAGCATCTGGGGTAGAGAGGAGAAGGACAAGA  400

seq1  TGGAGGCAGAAGTAAACCAGTGTGGCTTTAAACAGCCACAGGTAGTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAGAAGTAAACCAGTGTGGCTTTAAACAGCCACAGGTAGTTATG  450

seq1  ATATCATGAGGTTAAAATAATTGAGATAAAGCTTTTATCATTTTCTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGAGGTTAAAATAATTGAGATAAAGCTTTTATCATTTTCTGAAA  500

seq1  TTATTGTATTGGCATCTTGTAAATTGAGAACTTATTGATACATAAATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTATTGGCATCTTGTAAATTGAGAACTTATTGATACATAAATATG  550

seq1  AGTCATTAATTATAAGCTTCAAGAGGTTTGATTTACTTGGTTGATGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTAATTATAAGCTTCAAGAGGTTTGATTTACTTGGTTGATGGGTG  600

seq1  GTGTGGTGGCTAACCATGTGGTGTACGATCCTTGCATGGTGCTTTTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTGGCTAACCATGTGGTGTACGATCCTTGCATGGTGCTTTTGTGG  650

seq1  TATAGAAGGGAACTTTAGCTCCAGCCACGCCGGAGAATTGGCCAGCAG-A  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATAGAAGGGAACTTTAGCTCCAGCCACGCCGGAGAATTGGCCAGCAGAA  700

seq1  AAAGAATACCCCAGCCTTGCCAGAGAGACAGCAGAATTGAGATCACCTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATACCCCAGCCTTGCCAGAGAGACAGCAGAATTGAGATCACCTGG  750

seq1  CTGGAACCATGTGGTCTACCAGTTGCTGGCATTAACTCAGGAAGCCTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCATGTGGTCTACCAGTTGCTGGCATTAACTCAGGAAGCCTGCT  800

seq1  GGGCCATTTTTTAGTATTTCCCGATACACTTTTTGTTCTGGCATCTTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATTTTTTAGTATTTCCCGATACACTTTTTGTTCTGGCATCTTGTT  850

seq1  TATTAGATTATTTTTATGATCTCCAAATTTAAAAGATTATCTTCAGTAGG  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATTAGATTATTTTTATGATCTCCAAATTT-AAAGATTATCTTCAGTAGG  899

seq1  AACATCAGAATTATAGTAATTTTATGTAGTTCTCATTCACAATGCTTAGG  949
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  AACATCAGAATTATAGTAATTTTAGGTAG-TCTCATTCACAATGCTTAGG  948

seq1  AACACAGA-TGTTTCATAT-ATTTAGAATTTTATTTGACTTTGGAATATT  997
      |||||||| |||||||||| |||||||| ||||||||||||||||| |||
seq2  AACACAGATTGTTTCATATAATTTAGAA-TTTATTTGACTTTGGAAAATT  997

seq1  TCTAT-AAACATTACTGCTTGAATATATCTAGTCTAAAACCTAAAAGTG-  1045
      ||||| ||||||||||||||||||| ||||||||||||||||||||||| 
seq2  TCTATAAAACATTACTGCTTGAATA-ATCTAGTCTAAAACCTAAAAGTGG  1046

seq1  -CTATAAAATATAA  1058
        ||||||||||||
seq2  CTTATAAAATATAA  1060