BAC Information

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BAC

Clone NameB6Ng01-045F04
ChromosomeX (Build37)
Map Location 101,645,753 - 101,646,879
singlet/doubletsinglet
Overlap genenone
Upstream geneTsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542
Downstream geneUprt, Zdhhc15, Magee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik, LOC622202, LOC100043213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045F04.bB6Ng01-045F04.g
ACCDH870810DH870811
length1,0761,086
definitionDH870810|Mus musculus domesticus DNA, BAC clone: B6Ng01-045F04, 5' end.DH870811|Mus musculus domesticus DNA, BAC clone: B6Ng01-045F04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaatgcaattctgatatgtctgcctttatattttacttgaccgt
tttctcctactgcttttgatattctttctttgttttgtgcatttggtgtt
ttgactattatatgatgggaggaatttcttttctggtttaatctatttgg
agttctgtaggcttcttgtatgtttaggggcacctctttccttaggttag
ggaagttttcttctataattttgttgatgttatttactggctctttaatt
tggggatctttgccctcttctatacatattatccttaagcttggtcttct
cattgtgtcctggatttcctggattttttgggttaggagcgttttgcatt
ttgtaaaactgttttctttaactgttttgtagatgttttctatgctatct
tttgtacttgagattctctcttctatctcttgtattctgttggtgatact
tgcatctatgactcctgatctctttcctaggttttctatctccagtttcc
ctttgtgatttattgattctatttccatttttagatcctggatggttttg
ttcaatttcttcatctttttgattgtgttttcctgtaatcctttaaggga
tttttgtgtttcctctttaagggcttctagctgtttacctgtgttctcct
ctatttctttaagggagttatttatgtccttcataaagtcctctatcatc
atcatgagatgtgactttaaatcagagtcttgcttttctggtgtgtttgg
gtatccagggttcgctttggtgtgagaactaggttctgatgatgccaagc
agccttggtttctgtgcttattttcttgcccttgcctcttgacatctcgt
tatctttggtgttagctggtcttgctgtctctgactggtggcttgtccct
actgcaagcctgtgtgtcagtactcctgggagagcagttctctcctggag
gatttggtatgcagagctgtgtcacagttcagctccggggtacatacaga
ctgaacagaggttctgtctcagctgctcctcagttcctgtgtcctgaagg
cctgggcgggttcttctaacagaagt
gaattcttttaacagcaatgtggggcttgtagcacaacatatgaagatta
ggaacaaaaacaagctactacaagagtccagtgggggtggaggttaagga
caagtgcaatgaaggtggaaggaaagattatgagcatattccagaaatag
aatggatgaagtagacaaattgctcttgctgctagggaaaggaagaagca
aaggatttcacccgaatgaccaattgaattgccattaaccaaatgggaag
atgatagaaggtgataaaattccaagtttggtggctattttttttgtttt
gttttgttttgctttgttttgttttgttttgttttgtttttttcttttca
ggttctgcatattacccatttattctttatttctgaatatcacaaactcc
aattgaatactttaaaaaatattcttttgcatgcatttaacaaatccaac
aaaatgacagatattcagtttacttgcatggtaactatgaagttttgaac
tgaagaaccaataaacatgaacatgaaagtataaagttcaggaaagaagg
ctgaaattcaagatgagagttatgggctggcaataaggctcagccagtaa
aggagtgtgctgacaaggctcatacccagaactgaaccggagagaacctg
ctttcacaacttgtcttctgaccctcacacacatcctgtgaaataccccc
caccatacattaaaatgtaatattttttatttgttggacttgtttttgtt
tgagacaaggactcactacatagtcctggctatctttgaacttactatgt
ataccaggctggccttgaccacacagacaactgcctcctctgcctcttga
gtggtagattgatgcatatgccaacacctctgtgtaatatatttttttaa
atgatttgatagctataagcagagttgagctgatgtatagagctatctat
atccagtacttagagtgagctgagattgggatattggtagactgaatatc
attaatgctgttcacatgaaggcagctagtcatgcattattcctggaaga
acgatgtactctctatgatcattcaaactggtgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_101645753_101646879
seq2: B6Ng01-045F04.g_69_1154 (reverse)

seq1  ACTCATCCAGTTTTGTATGATCATTGAAGAGTACAATCCTGTCTCTTTCC  50
      ||||| |||| |||| |||||||| | ||||||| ||| |   || ||||
seq2  ACTCA-CCAG-TTTGAATGATCATAG-AGAGTAC-ATCGT---TC-TTCC  42

seq1  AGGTGATAAATGCCATGACTTTAGGTGCTGGCCTTCATGTTGAGACAGCA  100
      ||  ||  |||| |||||||      ||| ||||||||| ||| ||||||
seq2  AG--GAATAATG-CATGACT-----AGCT-GCCTTCATG-TGA-ACAGCA  81

seq1  TTTTAATGGATATTTCAGTCTAACCAAATATTCCCAATCCTCCAGCCTCC  150
        ||||| |||| |||||||||  | |||| ||||||||   ||||   |
seq2  --TTAAT-GATA-TTCAGTCTA--CCAATA-TCCCAATC--TCAGC--TC  120

seq1  ACTCTAAAGTACTGGGATTATAGATATGCTCTAATACATCCAGCTCAACT  200
      ||||| |||||||||   |||||||| ||||| |||||| ||||||||||
seq2  ACTCT-AAGTACTGG--ATATAGATA-GCTCT-ATACAT-CAGCTCAACT  164

seq1  CTGCTTTAATAGCTATCAAATCATTTAAAAAAATATATTACCACCAGAGG  250
      ||||||  |||||||||||||||||||||||||||||||||   ||||||
seq2  CTGCTT--ATAGCTATCAAATCATTTAAAAAAATATATTAC--ACAGAGG  210

seq1  TGTTGGCATATGCATCAATTCTACCACTCAAGAGGCAGAGGAGGCAGTTG  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTTGGCATATGCATCAA-TCTACCACTCAAGAGGCAGAGGAGGCAGTTG  259

seq1  TCTGTGTGGTCAAGGCCAGCCTGGTATACATAGTAAGTTCAAAGATAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGTCAAGGCCAGCCTGGTATACATAGTAAGTTCAAAGATAGCC  309

seq1  AGGACTATGTAGTGAGTCCTTGTCTCAAACAAAAACAAGTCCAACAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTATGTAGTGAGTCCTTGTCTCAAACAAAAACAAGTCCAACAAATA  359

seq1  AAAAATATTACATTTTAATGTATGGTGGGGGGTATTTCACAGGATGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTACATTTTAATGTATGGTGGGGGGTATTTCACAGGATGTGTG  409

seq1  TGAGGGTCAGAAGACAAGTTGTGAAAGCAGGTTCTCTCCGGTTCAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCAGAAGACAAGTTGTGAAAGCAGGTTCTCTCCGGTTCAGTTCT  459

seq1  GGGTATGAGCCTTGTCAGCACACTCCTTTACTGGCTGAGCCTTATTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGAGCCTTGTCAGCACACTCCTTTACTGGCTGAGCCTTATTGCCA  509

seq1  GCCCATAACTCTCATCTTGAATTTCAGCCTTCTTTCCTGAACTTTATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAACTCTCATCTTGAATTTCAGCCTTCTTTCCTGAACTTTATACT  559

seq1  TTCATGTTCATGTTTATTGGTTCTTCAGTTCAAAACTTCATAGTTACCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCATGTTTATTGGTTCTTCAGTTCAAAACTTCATAGTTACCAT  609

seq1  GCAAGTAAACTGAATATCTGTCATTTTGTTGGATTTGTTAAATGCATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAAACTGAATATCTGTCATTTTGTTGGATTTGTTAAATGCATGCA  659

seq1  AAAGAATATTTTTTAAAGTATTCAATTGGAGTTTGTGATATTCAGAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATTTTTTAAAGTATTCAATTGGAGTTTGTGATATTCAGAAATA  709

seq1  AAGAATAAATGGGTAATATGCAGAACCTGAAAAGAAAAAAACAAAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAATGGGTAATATGCAGAACCTGAAAAGAAAAAAACAAAACAAA  759

seq1  ACAAAACAAAACAAAGCAAAACAAAACAAAACAAAAAAAATAGCCACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACAAAGCAAAACAAAACAAAACAAAAAAAATAGCCACCAA  809

seq1  ACTTGGAATTTTATCACCTTCTATCATCTTCCCATTTGGTTAATGGCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAATTTTATCACCTTCTATCATCTTCCCATTTGGTTAATGGCAAT  859

seq1  TCAATTGGTCATTCGGGTGAAATCCTTTGCTTCTTCCTTTCCCTAGCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGGTCATTCGGGTGAAATCCTTTGCTTCTTCCTTTCCCTAGCAGC  909

seq1  AAGAGCAATTTGTCTACTTCATCCATTCTATTTCTGGAATATGCTCATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAATTTGTCTACTTCATCCATTCTATTTCTGGAATATGCTCATAA  959

seq1  TCTTTCCTTCCACCTTCATTGCACTTGTCCTTAACCTCCACCCCCACTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTCCACCTTCATTGCACTTGTCCTTAACCTCCACCCCCACTGG  1009

seq1  ACTCTTGTAGTAGCTTGTTTTTGTTCCTAATCTTCATATGTTGTGCTACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTAGTAGCTTGTTTTTGTTCCTAATCTTCATATGTTGTGCTACA  1059

seq1  AGCCCCACATTGCTGTTAAAAGAATTC  1127
      |||||||||||||||||||||||||||
seq2  AGCCCCACATTGCTGTTAAAAGAATTC  1086