BAC Information

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BAC

Clone NameB6Ng01-045O05
ChromosomeX (Build37)
Map Location 113,620,160 - 113,722,083
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039277, Cpxcr1
Downstream geneEG624153, LOC100039300, EG665045, LOC100039319, LOC624284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045O05.bB6Ng01-045O05.g
ACCDH871214DH871215
length1,143431
definitionDH871214|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O05, 5' end.DH871215|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,720,926 - 113,722,083)(113,620,160 - 113,620,596)
sequence
gaattcagtgtatggctggagataactttctgagcaatgagatattctca
aaagccagataaagaatgtaaatcaaagctatgtcatttgtttttccttg
caagtggtactaactaaaaataaattatgactgctattcactcatgaata
ttccttccaaggtatacataaatactatatatcattcatgtcatttcttt
ttcctttgcaaaaaaggtttgcacttaccactgcttatatttttggtgtg
tgccactgtctttattgttgccaattctctaacagcatatttgtaattca
ggggtgagagagagagagagagagagagagcgagtgagagagagcaataa
cgatcatgttttaagtgatgacttgtattcattttacatgcttaatttga
acatcattcattctcttagtgtagaaatagtcaaacagaatttaagaact
tcagcatcatgatttcaaatgagaatttgattgattgggttttctacagt
ggatataaagagactagactaaaatcattaaataagcaacagagatgcta
tgtttaaatgtctgatctcagtcaccttttatacctgaataagttaaatt
tctataaaagaatttttatattcagctgacatgtgaaaattacaaaaaaa
atctggtataatcgtgcattaaatacatctccagtaatattaatttgaat
tttgttgatttataagaaatctttaatatctgtggagttttcctaaatga
taaaaaagtgacgatttaactttatataattaaaacacatacttatgaag
gcaagagattttgtttaattttttctggatacaaacatctgcaaaaaggt
aattaacttaagacatgagaatttaagtgagatattaaataaacaatcga
taagaaactttctagatacttgaatataagcataagtgaaattttgttaa
ggaattttaacataatagtctcttaactaaatatataaattcagtgaaag
tacatttttatgcctgaagatattagtgtcagcagggtttgacattccta
ggataaaataatctcttcttgggccacttcccttaaaagactaagctaca
gactggtattgcaacagatcagcattttgctggatcagaaaca
atgctggaccttgaatggggcagactactgatagatggagatgatgacaa
gaacaacatatgttgactgattctcaaggaagttttgtaaacatactgaa
aactaacccctggggagcttcccaacagagggaaaagcctgagacatatg
agtgggatacagacctctcaagttcccacatagagttttcagtatcaaca
atattaggaagcacagggcaatgggcttgtttataaatctaacaggagca
ataggtttcatattgtaatcatagaccccaaactggctgtcttaaaactg
aatagattcttccatctttttggtgtgcaaaaggtacttactcttgacca
cttactatctgaatggtagtctatgcacgcgtacatgcacatgtaaatat
aggtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_113720926_113722083
seq2: B6Ng01-045O05.b_46_1188 (reverse)

seq1  TGTTTCTTGTATCCAGCAAAATGCTGGATCTTGTTTGCATATCCAGTCTG  50
      |||||||   ||||||||||||||| |||||   |||||   ||||||||
seq2  TGTTTCT--GATCCAGCAAAATGCT-GATCT--GTTGCAATACCAGTCTG  45

seq1  TTAGCTTATGTCTTTTTATAGGAAAGTTGGTCCAGAAGAGATTATTTTAT  100
       ||||||| |||||||   ||| |||| |  | |||||||||||||||||
seq2  -TAGCTTA-GTCTTTT--AAGGGAAGTGGCCCAAGAAGAGATTATTTTAT  91

seq1  ACTATGAATGTTCTAAACCCTGCTGACACTTATAATCTCAGGCAT-AAAA  149
       ||| ||||||   |||||||||||||||| |||   |||||||| ||||
seq2  CCTAGGAATGT--CAAACCCTGCTGACACTAATATCTTCAGGCATAAAAA  139

seq1  TGTACTTTTTCACTGAATTTATATAATTTTAGTTAAGAGACTATTATGTT  199
      |||||  ||||||||||||||||||  |||||||||||||||||||||||
seq2  TGTAC--TTTCACTGAATTTATATA--TTTAGTTAAGAGACTATTATGTT  185

seq1  AAAATTTCTTAACAAAATTTCAACTTATGCTTATATTCAGGTATCTAGAA  249
      |||||| |||||||||||||| ||||||||||||||||| ||||||||||
seq2  AAAATTCCTTAACAAAATTTC-ACTTATGCTTATATTCAAGTATCTAGAA  234

seq1  AGTTTCTTATCGATTGTTTATTTAATATCTCACTTAAATTCTCATGTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTATCGATTGTTTATTTAATATCTCACTTAAATTCTCATGTCTT  284

seq1  AAGTTAATTACCTTTTTGCAGATGTTTGTATCCAGAAAAAATTAAACAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATTACCTTTTTGCAGATGTTTGTATCCAGAAAAAATTAAACAAA  334

seq1  ATCTCTTGCCTTCATAAGTATGTGTTTTAATTATATAAAGTTAAATCGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGCCTTCATAAGTATGTGTTTTAATTATATAAAGTTAAATCGTC  384

seq1  ACTTTTTTATCATTTAGGAAAACTCCACAGATATTAAAGATTTCTTATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTATCATTTAGGAAAACTCCACAGATATTAAAGATTTCTTATAA  434

seq1  ATCAACAAAATTCAAATTAATATTACTGGAGATGTATTTAATGCACGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAAATTCAAATTAATATTACTGGAGATGTATTTAATGCACGATT  484

seq1  ATACCAGATTTTTTTTGTAATTTTCACATGTCAGCTGAATATAAAAATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGATTTTTTTTGTAATTTTCACATGTCAGCTGAATATAAAAATTC  534

seq1  TTTTATAGAAATTTAACTTATTCAGGTATAAAAGGTGACTGAGATCAGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGAAATTTAACTTATTCAGGTATAAAAGGTGACTGAGATCAGAC  584

seq1  ATTTAAACATAGCATCTCTGTTGCTTATTTAATGATTTTAGTCTAGTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACATAGCATCTCTGTTGCTTATTTAATGATTTTAGTCTAGTCTC  634

seq1  TTTATATCCACTGTAGAAAACCCAATCAATCAAATTCTCATTTGAAATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCCACTGTAGAAAACCCAATCAATCAAATTCTCATTTGAAATCA  684

seq1  TGATGCTGAAGTTCTTAAATTCTGTTTGACTATTTCTACACTAAGAGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGAAGTTCTTAAATTCTGTTTGACTATTTCTACACTAAGAGAAT  734

seq1  GAATGATGTTCAAATTAAGCATGTAAAATGAATACAAGTCATCACTTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATGTTCAAATTAAGCATGTAAAATGAATACAAGTCATCACTTAAA  784

seq1  ACATGATCGTTATTGCTCTCTCTCACTCGCTCTCTCTCTCTCTCTCTCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATCGTTATTGCTCTCTCTCACTCGCTCTCTCTCTCTCTCTCTCTC  834

seq1  TCTCACCCCTGAATTACAAATATGCTGTTAGAGAATTGGCAACAATAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCCTGAATTACAAATATGCTGTTAGAGAATTGGCAACAATAAAG  884

seq1  ACAGTGGCACACACCAAAAATATAAGCAGTGGTAAGTGCAAACCTTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCACACACCAAAAATATAAGCAGTGGTAAGTGCAAACCTTTTTT  934

seq1  GCAAAGGAAAAAGAAATGACATGAATGATATATAGTATTTATGTATACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAAAAAGAAATGACATGAATGATATATAGTATTTATGTATACCT  984

seq1  TGGAAGGAATATTCATGAGTGAATAGCAGTCATAATTTATTTTTAGTTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAATATTCATGAGTGAATAGCAGTCATAATTTATTTTTAGTTAG  1034

seq1  TACCACTTGCAAGGAAAAACAAATGACATAGCTTTGATTTACATTCTTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTGCAAGGAAAAACAAATGACATAGCTTTGATTTACATTCTTTA  1084

seq1  TCTGGCTTTTGAGAATATCTCATTGCTCAGAAAGTTATCTCCAGCCATAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTTTGAGAATATCTCATTGCTCAGAAAGTTATCTCCAGCCATAC  1134

seq1  ACTGAATTC  1158
      |||||||||
seq2  ACTGAATTC  1143

seq1: chrX_113620160_113620596
seq2: B6Ng01-045O05.g_69_505

seq1  GAATTCATGCTGGACCTTGAATGGGGCAGACTACTGATAGATGGAGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTGGACCTTGAATGGGGCAGACTACTGATAGATGGAGATGA  50

seq1  TGACAAGAACAACATATGTTGACTGATTCTCAAGGAAGTTTTGTAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGAACAACATATGTTGACTGATTCTCAAGGAAGTTTTGTAAACAT  100

seq1  ACTGAAAACTAACCCCTGGGGAGCTTCCCAACAGAGGGAAAAGCCTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAACTAACCCCTGGGGAGCTTCCCAACAGAGGGAAAAGCCTGAGA  150

seq1  CATATGAGTGGGATACAGACCTCTCAAGTTCCCACATAGAGTTTTCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAGTGGGATACAGACCTCTCAAGTTCCCACATAGAGTTTTCAGTA  200

seq1  TCAACAATATTAGGAAGCACAGGGCAATGGGCTTGTTTATAAATCTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATATTAGGAAGCACAGGGCAATGGGCTTGTTTATAAATCTAACA  250

seq1  GGAGCAATAGGTTTCATATTGTAATCATAGACCCCAAACTGGCTGTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAATAGGTTTCATATTGTAATCATAGACCCCAAACTGGCTGTCTTA  300

seq1  AAACTGAATAGATTCTTCCATCTTTTTGGTGTGCAAAAGGTACTTACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAATAGATTCTTCCATCTTTTTGGTGTGCAAAAGGTACTTACTCT  350

seq1  TGACCACTTACTATCTGAATGGTAGTCTATGCACGCGTACATGCACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACTTACTATCTGAATGGTAGTCTATGCACGCGTACATGCACATGT  400

seq1  AAATATAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  437
      |||||||||||||||||||||||||||||||||||||
seq2  AAATATAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  437