BAC Information

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BAC

Clone NameB6Ng01-046A15
ChromosomeX (Build37)
Map Location 113,824,465 - 113,825,571
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039277, Cpxcr1, EG624153
Downstream geneLOC100039300, EG665045, LOC100039319, LOC624284, LOC665066
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046A15.bB6Ng01-046A15.g
ACCDH871321DH871322
length1,0861,212
definitionDH871321|Mus musculus domesticus DNA, BAC clone: B6Ng01-046A15, 5' end.DH871322|Mus musculus domesticus DNA, BAC clone: B6Ng01-046A15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatttgggatacatgatttattctagaccagcctacgttaaata
acaatatactccatatatatatatatatatatccatccaggaaaatatct
ttcttcagaaagtctcttaggctccaggaagaaatgtataaatcttttgt
tttctccatagtcccttctcatctgatctaaaaatccactcaaaaagaaa
aagagcaaaattcttgctaaaacaaaacaaaagcaggccatttaaagaaa
tctttgtcttgtatctttcatgtttatttagacataaactcatctagaga
aatgggtctcccactgtggctgcaaataaagctgagggatgaacattccc
agcaccaacaatttgaaaagggaaacaccatttcttttattacagacaca
aatggtatataactctgagctctgcagaattccaaagtatgctttgcttt
cttcttaatcatttacctgctttccatgtctttctgggtactttgaattt
taacttactacagggctaaaaaccccccataagatacatgaggcagctct
tactccctgtttttctgcataaggaatctataggttttgtgtatttaaac
aaaaaatgttgacagcagtgaatccattttatagcccttgatccatctgg
gctgaggtacatatcatatgagcttgctaaaatgcctgaaaagttgatta
tgacagaatacaatgtcaaaagtctttctaaggacaacaatgtggtctct
gctgcaccagtgaacatatgaagtaaaatcttgttccatttatattgaca
aataattgatctaatctccttcttttttctttttttttatctttacaaaa
tcctctaactccctatctaatggaacacattctgatctctattaaactat
gtgatctgataattgatttgaaaatttaacagctcagataaatgtcatgt
tgtttaaaagattatagtctctttgaaataattggggagctgatgatagt
atgctgagcaagacatgctgaatgagtgcttttgatgcatctctcatgca
gacttactaatgaacatttactatcaaatctgatgg
gaattctcctctgaggaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcaaaggccagcttgctgcttggcctcttggcagtcgg
cttcaaggtcatagtgcacctccaccctatgctgagcccccgccctgcgt
agtgcatcagccctgcgcagagaggcaatggacagagaggcaatgcacag
attcgttcattccaaaggaggaacaaaggaaaatacaacaggcatttccg
gtctttgaaggagccgagggtgggcgtgtccacgctccggtagcgtatat
acagattaaagagcttgccgagtcggtccgtaactatggagtcagtgcta
atttcactatagcacaagtggaaaggcttgcgaatcacgctatgactcct
ggtgattggcaaacggttgtaaaagccgctctccctagtatgggcaaata
tatggaatggagagcgctttggcacgaagctgcacaagcgcaggcccgag
caaacgcagctgctttgactccagagcagagagattggacttttgacttg
ttaacgggtcagggagcttattctgctgatcaaacaaactaccattgggg
agcttatgcccagatttcttccacggctattagggcctggaaggcgctct
ctcgagcaggtgaaaccactggtcagttaacaaagataatccagggacct
caggaatccttctcagattttgtggccagaatgacagaggcagcagagcg
tatttttggagagtcagagcaagctgcgcctctgatagaacagctaatct
atgagcaagccacaaaggagtgccgagcagccatagccccaagaaagaac
aaaggcttacagactggctcaggtttgtcggagcttgggggactctcaca
atgcagcttagcgctgcatcttcatcccaaaatgctcatgggcagaatga
tcgagacatgtttactgcagagctggcatctagaagatgcagagcttcag
taacagagactctccctcttgctttaggtgtgcagtatctaagctgacat
gtcgcctgtagattaaggcagtctctcccactgatagtacatcagctatt
tcaacggctcggcctggtccaagctctaaatattgtgaacagagttgttc
gtgaaactacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_113824465_113825571
seq2: B6Ng01-046A15.b_43_1128 (reverse)

seq1  CCATACAGATTTTTGGTTAGTAAATGTTTCATTTAGGTGAGGTCTGCAAT  50
      |||| |||||||   | ||||||||| |||| ||||   | |||||||  
seq2  CCAT-CAGATTT---GATAGTAAATG-TTCA-TTAG--TAAGTCTGCA--  40

seq1  TGAGAAGATGCATCCAAAAGCACTTCATTTCAGCCATGTTCCTTGCTCAG  100
      |||| |||||||| ||||||||| ||| ||||| |||||  |||||||||
seq2  TGAG-AGATGCAT-CAAAAGCAC-TCA-TTCAG-CATGT--CTTGCTCAG  83

seq1  CATACTAATTCATCAGCTCCCCAATTATTTCAAAGAGGCTAATAATCTTT  150
      |||||||  |||||||||||||||||||||||||||| || |||||||||
seq2  CATACTA--TCATCAGCTCCCCAATTATTTCAAAGAGACT-ATAATCTTT  130

seq1  TAAACAACATGACATTTATCTGAGCTGTTAAATTTTCAAATCAATTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACATGACATTTATCTGAGCTGTTAAATTTTCAAATCAATTATCA  180

seq1  GATCACATAGTTTAATAGAGATCAGAATGTGTTCCATTAGATAGGGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACATAGTTTAATAGAGATCAGAATGTGTTCCATTAGATAGGGAGTT  230

seq1  AGAGGATTTTTGTAAAGATAAAAAAAAAGAAAAAAGAAGGAGATTAGATC  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGA-TTTTGTAAAGATAAAAAAAAAGAAAAAAGAAGGAGATTAGATC  279

seq1  AATTATTTGTCAATATAAATGGAACAAGATTTTACTTCATATGTTCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTGTCAATATAAATGGAACAAGATTTTACTTCATATGTTCACTG  329

seq1  GTGCAGCAGAGACCACATTGTTGTCCTTAGAAAGACTTTTGACATTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCAGAGACCACATTGTTGTCCTTAGAAAGACTTTTGACATTGTAT  379

seq1  TCTGTCATAATCAACTTTTCAGGCATTTTAGCAAGCTCATATGATATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATAATCAACTTTTCAGGCATTTTAGCAAGCTCATATGATATGTA  429

seq1  CCTCAGCCCAGATGGATCAAGGGCTATAAAATGGATTCACTGCTGTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCCAGATGGATCAAGGGCTATAAAATGGATTCACTGCTGTCAAC  479

seq1  ATTTTTTGTTTAAATACACAAAACCTATAGATTCCTTATGCAGAAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTTTAAATACACAAAACCTATAGATTCCTTATGCAGAAAAACA  529

seq1  GGGAGTAAGAGCTGCCTCATGTATCTTATGGGGGGTTTTTAGCCCTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAAGAGCTGCCTCATGTATCTTATGGGGGGTTTTTAGCCCTGTAG  579

seq1  TAAGTTAAAATTCAAAGTACCCAGAAAGACATGGAAAGCAGGTAAATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAAAATTCAAAGTACCCAGAAAGACATGGAAAGCAGGTAAATGAT  629

seq1  TAAGAAGAAAGCAAAGCATACTTTGGAATTCTGCAGAGCTCAGAGTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGAAAGCAAAGCATACTTTGGAATTCTGCAGAGCTCAGAGTTATA  679

seq1  TACCATTTGTGTCTGTAATAAAAGAAATGGTGTTTCCCTTTTCAAATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTGTGTCTGTAATAAAAGAAATGGTGTTTCCCTTTTCAAATTGT  729

seq1  TGGTGCTGGGAATGTTCATCCCTCAGCTTTATTTGCAGCCACAGTGGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGGGAATGTTCATCCCTCAGCTTTATTTGCAGCCACAGTGGGAG  779

seq1  ACCCATTTCTCTAGATGAGTTTATGTCTAAATAAACATGAAAGATACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTCTCTAGATGAGTTTATGTCTAAATAAACATGAAAGATACAAG  829

seq1  ACAAAGATTTCTTTAAATGGCCTGCTTTTGTTTTGTTTTAGCAAGAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATTTCTTTAAATGGCCTGCTTTTGTTTTGTTTTAGCAAGAATTT  879

seq1  TGCTCTTTTTCTTTTTGAGTGGATTTTTAGATCAGATGAGAAGGGACTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTTTCTTTTTGAGTGGATTTTTAGATCAGATGAGAAGGGACTAT  929

seq1  GGAGAAAACAAAAGATTTATACATTTCTTCCTGGAGCCTAAGAGACTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAACAAAAGATTTATACATTTCTTCCTGGAGCCTAAGAGACTTTC  979

seq1  TGAAGAAAGATATTTTCCTGGATGGATATATATATATATATATATGGAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAGATATTTTCCTGGATGGATATATATATATATATATATGGAGT  1029

seq1  ATATTGTTATTTAACGTAGGCTGGTCTAGAATAAATCATGTATCCCAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTATTTAACGTAGGCTGGTCTAGAATAAATCATGTATCCCAAAT  1079

seq1  GGAATTC  1107
      |||||||
seq2  GGAATTC  1086