BAC Information

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BAC

Clone NameB6Ng01-046P07
ChromosomeX (Build37)
Map Location 98,051,568 - 98,137,193
singlet/doubletdoublet
Overlap geneTex11
Upstream geneEda, Dgat2l4, Otud6a, Igbp1, LOC668257, Dgat2l3, LOC620734, P2ry4, Arr3, Pdzd11, Kif4, Gdpd2, Dlg3
Downstream geneLOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046P07.bB6Ng01-046P07.g
ACCDH871959DH871960
length1,0671,159
definitionDH871959|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P07, 5' end.DH871960|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,051,568 - 98,052,642)(98,136,013 - 98,137,193)
sequence
gaattctcaccctgaaggctctagattagttactgtgctagtagattctt
ataaaatgaggctaagcttcctcttttgtttcttgtttcatattagctca
ccctttcaccttctgccatgttatacgctcattacatgccttcattgatt
ttaaatccccagcctctggaactatgaggcaaattatatagtagaaaata
gccatctgaaaaacatgcacagtatatttcatgggaaaaaattaccagaa
aaatcaaagcaatcataagtcatcataagtatactcactaggactgctgg
aataatgataatattgataatgatgatgatgataataataataaaaatat
tattattaaataatactgatgatagtaataataaaaacattgccaaagag
gtaaagaaatttgaggctctatgtactgtcaatgggaatgtaaaattgtt
caaatgctttgaaatatagtttggcagtttctcaaatgattaagcatagt
aatcatatgactagcaattccacttctaggtacatacccaagaaaagtaa
aaggatgtacagacaaaaacttctatgcaaatgtttataacagcattact
cataactatcataagagaaaaacaagctaaatgatcaattgatcaaaaga
tgaataaaatagtatatttataagatggaatatttgattatgagaagtaa
tgaagtattgatagtccctacaacatgggggaactttgaaaatatgaaat
agtctaaagtaaaagccagtcacaaactatacatattatatgattcgata
tatatgaaacattcagaatatgcaaatctatttgaacagaacataaatta
gtggttcagaaaaatacaagggctgataaaaggtttgaagttttctttac
gaggtaatggaatgcgacctgactgtggtttcacttagctgatacagtaa
agtctactgaattatacattttcatgatgatgcatgacattcatttttca
aagatttaaatagtagtttcctgatgtatgtgtgtgcagtgtatgctaca
tgtatgtggcacctgca
gaattctcaaacatccggagtccctcaactgtatgattctaataatataa
tgcaataacttttagtttgataatataatttaataaatttaattctgata
atataatttaataaattctattatggtcaaagaagactgtggaggatgat
tttcaaaattgagaactaaagatatttcaaatcattgctaagttctttaa
aaaataactattgaactataatttaaatattaaaatatgcccactttgtt
atataattaaataaatctgagaaatatatatccacatgaacccactatca
caatctggatttggaatatctagaaaattcattagataaaatatttctaa
tcaatccccagctcaactcttaggctcaagtagtgaattatatgttttat
atcactatagaataaaattgtccttcttatagtttcatattaattatcca
tcacactatatatcaaaatgtatgcctagacaagacacattcagggagtt
ggtattgtaaatctcttgatactggtatggttatatagttttaatcattg
tgtgataactggttgtatactgacaatgtgtgcctttatttatatacact
gtatacaaataacatttttcttaaaatattgtggactagagcttaggtag
catttagtgggagatggattcaatatttcacaaatatatttgaagaactg
taaatgcaaatgcaaatattctgtcactagaaattactaaaacgagttta
gtgcagagttctatcagaccttcaaagaagatctaatcccagttcttcac
aaactattccacaaaatagaaacagaagtactctacccaactcattctat
gaagccacaattactctgaatacctaaacacaaagacccctcaaagatag
agaacttcagaccaatatccctatgaatattgatgcaaaatctcataaag
ttctgctaacgaatcagacacatcaaacatcatcatctgacagtagtttc
atcccaggatgcaggatgtcaatatacagaatcatcacgtaatcagttat
aaacaactcaagacaaacactgtgaatccattctcttcgtagatggcctg
agaaaagagcacatttggacattcacacacaatgcagataaaagtcttga
agattagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_98051568_98052642
seq2: B6Ng01-046P07.b_44_1110

seq1  GAATTCTCACCCTGAAGGCTCTAGATTAGTTACTGTGCTAGTAGATTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCCTGAAGGCTCTAGATTAGTTACTGTGCTAGTAGATTCTT  50

seq1  ATAAAATGAGGCTAAGCTTCCTCTTTTGTTTCTTGTTTCATATTAGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGAGGCTAAGCTTCCTCTTTTGTTTCTTGTTTCATATTAGCTCA  100

seq1  CCCTTTCACCTTCTGCCATGTTATACGCTCATTACATGCCTTCATTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCACCTTCTGCCATGTTATACGCTCATTACATGCCTTCATTGATT  150

seq1  TTAAATCCCCAGCCTCTGGAACTATGAGGCAAATTATATAGTAGAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCCCAGCCTCTGGAACTATGAGGCAAATTATATAGTAGAAAATA  200

seq1  GCCATCTGAAAAACATGCACAGTATATTTCATGGGAAAAAATTACCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTGAAAAACATGCACAGTATATTTCATGGGAAAAAATTACCAGAA  250

seq1  AAATCAAAGCAATCATAAGTCATCATAAGTATACTCACTAGGACTGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAGCAATCATAAGTCATCATAAGTATACTCACTAGGACTGCTGG  300

seq1  AATAATGATAATATTGATAATGATGATGATGATAATAATAATAAAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGATAATATTGATAATGATGATGATGATAATAATAATAAAAATAT  350

seq1  TATTATTAAATAATACTGATGATAGTAATAATAAAAACATTGCCAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTAAATAATACTGATGATAGTAATAATAAAAACATTGCCAAAGAG  400

seq1  GTAAAGAAATTTGAGGCTCTATGTACTGTCAATGGGAATGTAAAATTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAAATTTGAGGCTCTATGTACTGTCAATGGGAATGTAAAATTGTT  450

seq1  CAAATGCTTTGAAATATAGTTTGGCAGTTTCTCAAATGATTAAGCATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTTGAAATATAGTTTGGCAGTTTCTCAAATGATTAAGCATAGT  500

seq1  AATCATATGACTAGCAATTCCACTTCTAGGTACATACCCAAGAAAAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATGACTAGCAATTCCACTTCTAGGTACATACCCAAGAAAAGTAA  550

seq1  AAGGATGTACAGACAAAAACTTCTATGCAAATGTTTATAACAGCATTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTACAGACAAAAACTTCTATGCAAATGTTTATAACAGCATTACT  600

seq1  CATAACTATCATAAGAGAAAAACAAGCTAAATGATCAATTGATCAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTATCATAAGAGAAAAACAAGCTAAATGATCAATTGATCAAAAGA  650

seq1  TGAATAAAATAGTATATTTATAAGATGGAATATTTGATTATGAGAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAATAGTATATTTATAAGATGGAATATTTGATTATGAGAAGTAA  700

seq1  TGAAGTATTGATAGTCCCTACAACATGGGGGAACTTTGAAAATATGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATTGATAGTCCCTACAACATGGGGGAACTTTGAAAATATGAAAT  750

seq1  AGTCTAAAGTAAAAGCCAGTCACAAACTATACATATTATATGATTCGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAGTAAAAGCCAGTCACAAACTATACATATTATATGATTCGATA  800

seq1  TATATGAAACATTCAGAATATGCAAATCTATTTGAACAGAACATAAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAACATTCAGAATATGCAAATCTATTTGAACAGAACATAAATTA  850

seq1  GTGGTTCAG-AAAATACAAGGGCTGATAAAAGGTTTGAAG-TTTCTTTAC  898
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  GTGGTTCAGAAAAATACAAGGGCTGATAAAAGGTTTGAAGTTTTCTTTAC  900

seq1  GAGGTAATGGAATGCGACCTGACTGTGGTTTCACTTAGCTGAATACAGTA  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGGTAATGGAATGCGACCTGACTGTGGTTTCACTTAGCTG-ATACAGTA  949

seq1  AAGTCTACTGAATTATACATTTTCATGGATGAATTGCATGACATTCATTT  998
      |||||||||||||||||||||||||| |||||  ||||||||||||||||
seq2  AAGTCTACTGAATTATACATTTTCAT-GATGA--TGCATGACATTCATTT  996

seq1  TTCAAAGATTTAAATAAAGTAGTTTCCTTGGATGTATGTGTGTGCAAGTG  1048
      |||||||||||||||  |||||||||||  ||||||||||||||| ||||
seq2  TTCAAAGATTTAAAT--AGTAGTTTCCT--GATGTATGTGTGTGC-AGTG  1041

seq1  TATGCTACATGTATGTGGGCACCTGCA  1075
      |||||||||||||||| ||||||||||
seq2  TATGCTACATGTATGT-GGCACCTGCA  1067

seq1: chrX_98136013_98137193
seq2: B6Ng01-046P07.g_66_1224 (reverse)

seq1  TCCTGATCTTTCCAAGACTTTTATCCTGAATGGGTGTTGGATTTTGTCAA  50
      |||| |||||  |||||||||||||   | || ||||  || | |  |||
seq2  TCCTAATCTT--CAAGACTTTTATCTGCATTGTGTGT--GAATGT-CCAA  45

seq1  ATG-----CTTTCTCAG--CATCTA--ACGAG-ATG--ATCA-TGTGGTT  87
      |||      ||||||||  ||||||  | ||| |||   |||  |||  |
seq2  ATGTGCTCTTTTCTCAGGCCATCTACGAAGAGAATGGATTCACAGTG--T  93

seq1  TTGTCTTTGAGTTTGTTTATATACTGGATTACGTTGATGGATTTCTGTAT  137
      ||||| ||||| ||||||||| ||| ||||||| |||||   ||||||||
seq2  TTGTC-TTGAG-TTGTTTATA-ACT-GATTACG-TGATG--ATTCTGTAT  136

seq1  ATTGAACCATCCCTGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGA  187
      |||||  ||| ||||||| |||||||||||| |||||  |||| ||| ||
seq2  ATTGA--CAT-CCTGCAT-CCTGGGATGAAA-CTACT--GTCA-GAT-GA  177

seq1  TGATTGTTTTGATGTGTTCTTGGATTCGGTTAGCAAGAACTTTATTGAGG  237
      ||||   ||||||||| |||  ||||| |||||| ||||||||| |||| 
seq2  TGAT--GTTTGATGTG-TCT--GATTC-GTTAGC-AGAACTTTA-TGAG-  218

seq1  ATTTTTGCATCAATATTCATAAGGGATATTGGTCTGAAGTTCTCTATCTT  287
        |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  -ATTTTGCATCAATATTCAT-AGGGATATTGGTCTGAAGTTCTCTATCTT  266

seq1  TGAGGGGTCTTTGTGGTTTAGGTA-TCAGAGTAATTGTGGCTTCATAGAA  336
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TGAGGGGTCTTTGT-GTTTAGGTATTCAGAGTAATTGTGGCTTCATAGAA  315

seq1  TGAGTTGGGTAGAGTACCTTCTGTTTCTATTTTGTGGAATAGTTTGTGAA  386
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGAGTTGGGTAGAGTA-CTTCTGTTTCTATTTTGTGGAATAGTTTGTGAA  364

seq1  GAACTGGGATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAAC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAAC  414

seq1  TCGTTTTAGTAATTTCTAGTGACAGAATATTTGCATTTGCATTTACAGTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTAGTAATTTCTAGTGACAGAATATTTGCATTTGCATTTACAGTT  464

seq1  CTTCAAATATATTTGTGAAATATTGAATCCATCTCCCACTAAATGCTACC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATATATTTGTGAAATATTGAATCCATCTCCCACTAAATGCTACC  514

seq1  TAAGCTCTAGTCCACAATATTTTAAGAAAAATGTTATTTGTATACAGTGT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTAGTCCACAATATTTTAAGAAAAATGTTATTTGTATACAGTGT  564

seq1  ATATAAATAAAGGCACACATTGTCAGTATACAACCAGTTATCACACAATG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAAAGGCACACATTGTCAGTATACAACCAGTTATCACACAATG  614

seq1  ATTAAAACTATATAACCATACCAGTATCAAGAGATTTACAATACCAACTC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTATATAACCATACCAGTATCAAGAGATTTACAATACCAACTC  664

seq1  CCTGAATGTGTCTTGTCTAGGCATACATTTTGATATATAGTGTGATGGAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGTGTCTTGTCTAGGCATACATTTTGATATATAGTGTGATGGAT  714

seq1  AATTAATATGAAACTATAAGAAGGACAATTTTATTCTATAGTGATATAAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATATGAAACTATAAGAAGGACAATTTTATTCTATAGTGATATAAA  764

seq1  ACATATAATTCACTACTTGAGCCTAAGAGTTGAGCTGGGGATTGATTAGA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAATTCACTACTTGAGCCTAAGAGTTGAGCTGGGGATTGATTAGA  814

seq1  AATATTTTATCTAATGAATTTTCTAGATATTCCAAATCCAGATTGTGATA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTATCTAATGAATTTTCTAGATATTCCAAATCCAGATTGTGATA  864

seq1  GTGGGTTCATGTGGATATATATTTCTCAGATTTATTTAATTATATAACAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTCATGTGGATATATATTTCTCAGATTTATTTAATTATATAACAA  914

seq1  AGTGGGCATATTTTAATATTTAAATTATAGTTCAATAGTTATTTTTTAAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCATATTTTAATATTTAAATTATAGTTCAATAGTTATTTTTTAAA  964

seq1  GAACTTAGCAATGATTTGAAATATCTTTAGTTCTCAATTTTGAAAATCAT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAGCAATGATTTGAAATATCTTTAGTTCTCAATTTTGAAAATCAT  1014

seq1  CCTCCACAGTCTTCTTTGACCATAATAGAATTTATTAAATTATATTATCA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACAGTCTTCTTTGACCATAATAGAATTTATTAAATTATATTATCA  1064

seq1  GAATTAAATTTATTAAATTATATTATCAAACTAAAAGTTATTGCATTATA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAATTTATTAAATTATATTATCAAACTAAAAGTTATTGCATTATA  1114

seq1  TTATTAGAATCATACAGTTGAGGGACTCCGGATGTTTGAGAATTC  1181
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAATCATACAGTTGAGGGACTCCGGATGTTTGAGAATTC  1159