BAC Information

Click to search

BAC

Clone NameB6Ng01-047D02
ChromosomeX (Build37)
Map Location 7,665,395 - 7,803,225
singlet/doubletdoublet
Overlap geneWas, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn
Upstream geneClcn5, Usp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1
Downstream geneFtsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263, Ssxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047D02.bB6Ng01-047D02.g
ACCDH872122DH872123
length966398
definitionDH872122|Mus musculus domesticus DNA, BAC clone: B6Ng01-047D02, 5' end.DH872123|Mus musculus domesticus DNA, BAC clone: B6Ng01-047D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,665,395 - 7,666,358)(7,802,827 - 7,803,225)
sequence
gaattctttaaatgtatattatgtgtgtgtgcgtgcaaggcacatgtgtg
gaggtcagaggacaactttgtggaattgtttctttcctatctttatgtgg
attctggggctagaacgatggtgtctaggcttggtggcaagcgctgttcc
atctcagcggccctctttgtccactgttcatctgtttacatgcccattca
tgaattctctgaaccacctattcattacttaaatgcaagtaagttttcat
ccatttacccaaatactcatgtacctatttatctataagccatcatcagt
ccatctcccaatttagccatgtctgccaccaatctatcaccgtgctcatc
tgtccacccaccatccacctctttatgaatttacagacagactcaagtac
tcattcatctactaacccccaccatctctccagtgatgtgagaattgcca
cttacccccatgatctccacccgggtgtgggggcacaggtgggagccctc
ctcttctctctggaaaaatggaatgagttcagatctgccctaatcttgct
cccccacatctctgggttagttcttcataaccttttatttgaacgagagg
actcaccctcattgattggtgctggtggtggtggtagctggcgtctttct
gtggttaaatagggtggactgagagccaaaaccatgagaggggcttttcc
agcctcacacccgtgcactcacctctgtctaacctacctccccccaattc
ccaccaaggcctccttcctccgctttgcctctgattcctttttttgtatc
ttctcctgcaccaaggcccggaaggctgggcttcactctcatccgcaaag
tccagtcctacttgacagttctaatacatgccttggggtcagcaaacttc
tagtacgcccccccacaatcccgggaatttctcttctcctccccatcccc
cccaactgcagcgcaa
aattcctagctcacaaccatctgtacagctactgtgtactcatatacatt
aaataaatctttttttttctttttgtttccgagacagggtttctctgtat
agccttggctgtcctggaactcactttgtagaccaggctggcctcaaact
cagaaatccgcctgcctctgcctcctgagtgctgggattaaaggcgtgcg
ccaccaccgcccggctctttcttttttaaaaaaagatttattggttgggc
gcctttaatatatatatatcatgagctcgatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tataatggctcttctagctttcttgggcagggggagggggagggggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_7665395_7666358
seq2: B6Ng01-047D02.b_42_1007

seq1  GAATTCTTTAAATGTATATTATGTGTGTGTGCGTGCAAGGCACATGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAATGTATATTATGTGTGTGTGCGTGCAAGGCACATGTGTG  50

seq1  GAGGTCAGAGGACAACTTTGTGGAATTGTTTCTTTCCTATCTTTATGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGAGGACAACTTTGTGGAATTGTTTCTTTCCTATCTTTATGTGG  100

seq1  ATTCTGGGGCTAGAACGATGGTGTCTAGGCTTGGTGGCAAGCGCTGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGGCTAGAACGATGGTGTCTAGGCTTGGTGGCAAGCGCTGTTCC  150

seq1  ATCTCAGCGGCCCTCTTTGTCCACTGTTCATCTGTTTACATGCCCATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCGGCCCTCTTTGTCCACTGTTCATCTGTTTACATGCCCATTCA  200

seq1  TGAATTCTCTGAACCACCTATTCATTACTTAAATGCAAGTAAGTTTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTCTGAACCACCTATTCATTACTTAAATGCAAGTAAGTTTTCAT  250

seq1  CCATTTACCCAAATACTCATGTACCTATTTATCTATAAGCCATCATCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTACCCAAATACTCATGTACCTATTTATCTATAAGCCATCATCAGT  300

seq1  CCATCTCCCAATTTAGCCATGTCTGCCACCAATCTATCACCGTGCTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCCAATTTAGCCATGTCTGCCACCAATCTATCACCGTGCTCATC  350

seq1  TGTCCACCCACCATCCACCTCTTTATGAATTTACAGACAGACTCAAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACCCACCATCCACCTCTTTATGAATTTACAGACAGACTCAAGTAC  400

seq1  TCATTCATCTACTAACCCCCACCATCTCTCCAGTGATGTGAGAATTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATCTACTAACCCCCACCATCTCTCCAGTGATGTGAGAATTGCCA  450

seq1  CTTACCCCCATGATCTCCACCCGGGTGTGGGGGCACAGGTGGGAGCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCCCATGATCTCCACCCGGGTGTGGGGGCACAGGTGGGAGCCCTC  500

seq1  CTCTTCTCTCTGGAAAAATGGAATGAGTTCAGATCTGCCCTAATCTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTCTGGAAAAATGGAATGAGTTCAGATCTGCCCTAATCTTGCT  550

seq1  CCCCCACATCTCTGGGTTAGTTCTTCATAACC-TTTATTTGAACGAGAGG  599
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCCCCACATCTCTGGGTTAGTTCTTCATAACCTTTTATTTGAACGAGAGG  600

seq1  ACTCACCCTCATTGATTGGTGCTGGTGGTGGTGGTAGCTGGCGTCTTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCCTCATTGATTGGTGCTGGTGGTGGTGGTAGCTGGCGTCTTTCT  650

seq1  GTGGTTAAATAGGGTGGACTGAGAGCCAAAACCATGAGAGGGGCTTTTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAATAGGGTGGACTGAGAGCCAAAACCATGAGAGGGGCTTTTCC  700

seq1  AGCCTCACACCCGTGCACTCACCTCTGTCTAACCTACCTCCCCCCAATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCACACCCGTGCACTCACCTCTGTCTAACCTACCTCCCCCCAATTC  750

seq1  CCACCAAGGCCTCCTTACCTCCGCTTTGCCTCTGATTCC-TTTTTTGTAT  798
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  CCACCAAGGCCTCCTT-CCTCCGCTTTGCCTCTGATTCCTTTTTTTGTAT  799

seq1  CTTCTCCTGCACCAAGGCCCGGAAGGCCTGGGCTTCACTCTCATCCGCAA  848
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTCTCCTGCACCAAGGCCCGGAAGG-CTGGGCTTCACTCTCATCCGCAA  848

seq1  AGTTCAGTCCTACTTGACAGTCCT-ATACATGCCTTGGGGTCAGCAAACT  897
      ||| ||||||||||||||||| || |||||||||||||||||||||||||
seq2  AGTCCAGTCCTACTTGACAGTTCTAATACATGCCTTGGGGTCAGCAAACT  898

seq1  TCTAGTACG-CCCCCCACATCCCCGGGACTTTCTCATCTCCTCCCCATCC  946
      ||||||||| |||||||||  ||||||| |||||| ||||||||||||||
seq2  TCTAGTACGCCCCCCCACAATCCCGGGAATTTCTCTTCTCCTCCCCATCC  948

seq1  CCCCCAACTGCAGCGCAA  964
      ||||||||||||||||||
seq2  CCCCCAACTGCAGCGCAA  966

seq1: chrX_7802827_7803225
seq2: B6Ng01-047D02.g_69_471 (reverse)

seq1  ACCCCCTCCCCCTCCCCCTGCCCAGGAATGCTAGAAGAGCCAT----GAT  46
      |||||||||||||||||||||||| ||| ||||||||||||||     ||
seq2  ACCCCCTCCCCCTCCCCCTGCCCAAGAAAGCTAGAAGAGCCATTATATAT  50

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  100

seq1  ATATATATATATATATATCGAGCTCATGATATATATATATTAAAGGCGCC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATCGAGCTCATGATATATATATATTAAAGGCGCC  150

seq1  CAACCAATAAATCTTTTTTTAAAAAAGAAAGAGCCGGGCGGTGGTGGCGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAATAAATCTTTTTTTAAAAAAGAAAGAGCCGGGCGGTGGTGGCGC  200

seq1  ACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGT  250

seq1  TTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTATA  300

seq1  CAGAGAAACCCTGTCTCGGAAACAAAAAGAAAAAAAAAGATTTATTTAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGGAAACAAAAAGAAAAAAAAAGATTTATTTAAT  350

seq1  GTATATGAGTACACAGTAGCTGTACAGATGGTTGTGAGCTAGGAATTGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGAGTACACAGTAGCTGTACAGATGGTTGTGAGCTAGGAATTGAA  400

seq1  TTC  399
      |||
seq2  TTC  403