BAC Information

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BAC

Clone NameB6Ng01-047J06
ChromosomeX (Build37)
Map Location 110,800,985 - 110,958,087
singlet/doubletdoublet
Overlap geneDach2
Upstream genePof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4, Gm1866, EG546361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047J06.bB6Ng01-047J06.g
ACCDH872402DH872403
length1,0591,103
definitionDH872402|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J06, 5' end.DH872403|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,957,025 - 110,958,087)(110,800,985 - 110,802,099)
sequence
gaattcttggattatagctgtatgtcattataccaaacttaaatttttat
tttaatcttttcatttcagcactattatttctctttcagtttagtcatag
gttactaatgcattttctaaataccagcactgtgagacttgatatattgt
ttcccagaggctctgactattatagaaaaataatgaagacagcctgaact
ggcattctaaacccactgaaaaggtgattatactgtggcagagcatcaaa
tgtcatttcatcaacactttctttttctacaagaatagagcaaagatact
gataacttggagtccaaaatgattgtttacacagtgtattttactgtgga
actgtgaagaaccagtttcaacaaaagaacaaacaaaacctttcacagag
cacctgataatttgctatttataaataatgttctaagtcagaaaatctgt
ataaaacaataatatcttcaatgtaacaaataataatacctagaaacttt
ttgtagggaattgcctgtctttagtttttgttcatttaaatactgaaatg
ggacatgtgataagaaggttcaaaggagactactataagaccgatgatat
aagcagtgagtggggaagggcaaaaggggagatgtgctgggtgtgggtag
caatgtggagttgaatatgtaaccaaaacaaagtttacacaaaagtcaca
tgtcatctcaacaaatgaagagataaatgccagaaattaatgagtaaatg
ttcaattttgaggaactctgatactgtccaagtgagtgtattaaggggtt
aatgttatatttgaatatggcatgttccttctacaatttattacaaaaat
ggaaatctatcattttggtattggctacaatgtattattacattttgagg
tgttcattatagaaactaatgtctttttcattagagtatgctctatttaa
gaaaccctaattagttaagtgaaagtaagttgatataaagcaattcaaat
tgctgttccatttttttttctattggatctggaaaaatgaaatggctcag
cagagtttc
gaattcttggagggagtcagggtaaacagccatgaaatgccacctctggc
agatggcattgctcacaagaaatgtgacaaaacatttggaattcgtaact
gggcattggtatgaggaagcaagctgttaaaattttttttaaagataagg
tggtgcatggtaaaagtgtagcccataatttaaagaaaatatgcaaagtt
acagctgttcatatcaatgcaaaattaatacattttatttgttatttctc
aatgatcactgtagcatgcaatctttcaggccattgtattctatgataat
aagtagcctatttacatttgaagttaggtacacgttttgtggccagagac
aaaatattattacttttctttccaatcaacttccagattgtacaatattt
ttatttctatgacaatttggaaatatgtcaaaattagaaaacaaaccaaa
tagcataaagaaaacatattagtgagaaaacataatttgaaaatatttta
aaatagtaacttttttctcaatggaaacaggcagaacaattattcatttt
gtaagatatcaacaataaaatatattctagtagatttaaacatttgataa
ttttttcagaaataacttaagtataatattatttaattttacttccagag
gcatatagtctatagctatgttcatgtaagtataatatgttgaatgaata
aagaacaactttttaaaagacacacaaaataaaaggaagtcagcttagtg
tattttactatcaaacaaagaattttttgaatgagctagtggctttatat
tttgccatttctatagtagagaaaattcttcgttgatggttgtatatatg
tacttagtgctgaatccagttgcattctttcacattagattgttgtgctc
agtaacaggaagggaaagggtgatttgtctgttgcctgcacacctgagtc
cgcctcatttccttcttgggttatacctggtacttggtcttatatcatat
catcttctatactcatacctaagttacaccctagaatgttctttctaact
tctacaataatttaaaatggatacttttctttttacaaattgcttaattt
tat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_110957025_110958087
seq2: B6Ng01-047J06.b_43_1101 (reverse)

seq1  GAAACTTCTGCTGAG-CATGTCATTTTTCCAGATCCAATAGAAAAAAAAA  49
      ||||| ||||||||| ||| ||||||||||||||||||||||||||||||
seq2  GAAAC-TCTGCTGAGCCATTTCATTTTTCCAGATCCAATAGAAAAAAAAA  49

seq1  TGGAACAGCAATTTGAATTGCTTTATATCAACTTACTTTCACTTTAACTA  99
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGAACAGCAATTTGAATTGCTTTATATCAACTTACTTTCAC-TTAACTA  98

seq1  ATTAGGGTTTCTTAAAATAAGAGCATACTCTTATGAAAAAGACATTAGTT  149
      ||||||||||||||||   |||||||||||| ||||||||||||||||||
seq2  ATTAGGGTTTCTTAAA--TAGAGCATACTCTAATGAAAAAGACATTAGTT  146

seq1  TCTATTAATGAACACCTCAAAATGTAATAATACATTGTAGCCAATACCAA  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTA-TAATGAACACCTCAAAATGTAATAATACATTGTAGCCAATACCAA  195

seq1  AATGATAGATTTCCATTTTTGTAATAAATTGTAGAAGGAACATGCCATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGATTTCCATTTTTGTAATAAATTGTAGAAGGAACATGCCATAT  245

seq1  TCAAATATAACATTAACCCCTTAATACACTCACTTGGACAGTATCAGAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATAACATTAACCCCTTAATACACTCACTTGGACAGTATCAGAGT  295

seq1  TCCTCAAAATTGAACATTTACTCATTAATTTCTGGCATTTATCTCTTCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAATTGAACATTTACTCATTAATTTCTGGCATTTATCTCTTCAT  345

seq1  TTGTTGAGATGACATGTGACTTTTGTGTAAACTTTGTTTTGGTTACATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGATGACATGTGACTTTTGTGTAAACTTTGTTTTGGTTACATAT  395

seq1  TCAACTCCACATTGCTACCCACACCCAGCACATCTCCCCTTTTGCCCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCACATTGCTACCCACACCCAGCACATCTCCCCTTTTGCCCTTC  445

seq1  CCCACTCACTGCTTATATCATCGGTCTTATAGTAGTCTCCTTTGAACCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCACTGCTTATATCATCGGTCTTATAGTAGTCTCCTTTGAACCTT  495

seq1  CTTATCACATGTCCCATTTCAGTATTTAAATGAACAAAAACTAAAGACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCACATGTCCCATTTCAGTATTTAAATGAACAAAAACTAAAGACAG  545

seq1  GCAATTCCCTACAAAAAGTTTCTAGGTATTATTATTTGTTACATTGAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCCCTACAAAAAGTTTCTAGGTATTATTATTTGTTACATTGAAGA  595

seq1  TATTATTGTTTTATACAGATTTTCTGACTTAGAACATTATTTATAAATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGTTTTATACAGATTTTCTGACTTAGAACATTATTTATAAATAG  645

seq1  CAAATTATCAGGTGCTCTGTGAAAGGTTTTGTTTGTTCTTTTGTTGAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATCAGGTGCTCTGTGAAAGGTTTTGTTTGTTCTTTTGTTGAAAC  695

seq1  TGGTTCTTCACAGTTCCACAGTAAAATACACTGTGTAAACAATCATTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTCACAGTTCCACAGTAAAATACACTGTGTAAACAATCATTTTG  745

seq1  GACTCCAAGTTATCAGTATCTTTGCTCTATTCTTGTAGAAAAAGAAAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAAGTTATCAGTATCTTTGCTCTATTCTTGTAGAAAAAGAAAGTG  795

seq1  TTGATGAAATGACATTTGATGCTCTGCCACAGTATAATCACCTTTTCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAAATGACATTTGATGCTCTGCCACAGTATAATCACCTTTTCAGT  845

seq1  GGGTTTAGAATGCCAGTTCAGGCTGTCTTCATTATTTTTCTATAATAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAGAATGCCAGTTCAGGCTGTCTTCATTATTTTTCTATAATAGTC  895

seq1  AGAGCCTCTGGGAAACAATATATCAAGTCTCACAGTGCTGGTATTTAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCTGGGAAACAATATATCAAGTCTCACAGTGCTGGTATTTAGAA  945

seq1  AATGCATTAGTAACCTATGACTAAACTGAAAGAGAAATAATAGTGCTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTAGTAACCTATGACTAAACTGAAAGAGAAATAATAGTGCTGAA  995

seq1  ATGAAAAGATTAAAATAAAAATTTAAGTTTGGTATAATGACATACAGCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGATTAAAATAAAAATTTAAGTTTGGTATAATGACATACAGCTA  1045

seq1  TAATCCAAGAATTC  1063
      ||||||||||||||
seq2  TAATCCAAGAATTC  1059

seq1: chrX_110800985_110802099
seq2: B6Ng01-047J06.g_66_1168

seq1  GAATTCTTGGAGGGAGTCAGGGTAAACAGCCATGAAATGCCACCTCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGGGAGTCAGGGTAAACAGCCATGAAATGCCACCTCTGGC  50

seq1  AGATGGCATTGCTCACAAGAAATGTGACAAAACATTTGGAATTCGTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCATTGCTCACAAGAAATGTGACAAAACATTTGGAATTCGTAACT  100

seq1  GGGCATTGGTATGAGGAAGCAAGCTGTTAAAATTTTTTTTAAAGATAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTGGTATGAGGAAGCAAGCTGTTAAAATTTTTTTTAAAGATAAGG  150

seq1  TGGTGCATGGTAAAAGTGTAGCCCATAATTTAAAGAAAATATGCAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATGGTAAAAGTGTAGCCCATAATTTAAAGAAAATATGCAAAGTT  200

seq1  ACAGCTGTTCATATCAATGCAAAATTAATACATTTTATTTGTTATTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTTCATATCAATGCAAAATTAATACATTTTATTTGTTATTTCTC  250

seq1  AATGATCACTGTAGCATGCAATCTTTCAGGCCATTGTATTCTATGATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCACTGTAGCATGCAATCTTTCAGGCCATTGTATTCTATGATAAT  300

seq1  AAGTAGCCTATTTACATTTGAAGTTAGGTACACGTTTTGTGGCCAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCCTATTTACATTTGAAGTTAGGTACACGTTTTGTGGCCAGAGAC  350

seq1  AAAATATTATTACTTTTCTTTCCAATCAACTTCCAGATTGTACAATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATTACTTTTCTTTCCAATCAACTTCCAGATTGTACAATATTT  400

seq1  TTATTTCTATGACAATTTGGAAATATGTCAAAATTAGAAAACAAACCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTATGACAATTTGGAAATATGTCAAAATTAGAAAACAAACCAAA  450

seq1  TAGCATAAAGAAAACATATTAGTGAGAAAACATAATTTGAAAATATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAAAGAAAACATATTAGTGAGAAAACATAATTTGAAAATATTTTA  500

seq1  AAATAGTAACTTTTTTCTCAATGGAAACAGGCAGAACAATTATTCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAACTTTTTTCTCAATGGAAACAGGCAGAACAATTATTCATTTT  550

seq1  GTAAGATATCAACAATAAAATATATTCTAGTAGATTTAAACATTTGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATATCAACAATAAAATATATTCTAGTAGATTTAAACATTTGATAA  600

seq1  TTTTTTCAGAAATAACTTAAGTATAATATTATTTAATTTTACTTCCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGAAATAACTTAAGTATAATATTATTTAATTTTACTTCCAGAG  650

seq1  GCATATAGTCTATAGCTATGTTCATGTAAGTATAATATGTTGAATGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAGTCTATAGCTATGTTCATGTAAGTATAATATGTTGAATGAATA  700

seq1  AAGAACAACTTTTTAAAAGACACACAAAATAAAAGGAAGTCAGCTTAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAACTTTTTAAAAGACACACAAAATAAAAGGAAGTCAGCTTAGTG  750

seq1  TATTTTACTATCAAACAAAGAATTTTTTGAATGAGCTAGTGGCTTTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACTATCAAACAAAGAATTTTTTGAATGAGCTAGTGGCTTTATAT  800

seq1  TTTGCCATTTCTATAGTAGAGAAAATTCTTCGTTGATGGTTGTATATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATTTCTATAGTAGAGAAAATTCTTCGTTGATGGTTGTATATATG  850

seq1  TACTTAGTGCTGAATCCAGTTGCATTCTTTCACATTAGATTGTTGTGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTGCTGAATCCAGTTGCATTCTTTCACATTAGATTGTTGTGCTC  900

seq1  AGTAACAGGGAAGGGAAAGGGTGATTTGTCTGTTGCCTGCACACCTGAGT  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACA-GGAAGGGAAAGGGTGATTTGTCTGTTGCCTGCACACCTGAGT  949

seq1  CCCGCCTCATTTCCTTCTTGGGTTATACCTGGGTAACTTGGTCTTATATC  1000
       |||||||||||||||||||||||||||||||   |||||||||||||||
seq2  -CCGCCTCATTTCCTTCTTGGGTTATACCTGG--TACTTGGTCTTATATC  996

seq1  ATTATCCATCTTCTATACTCATACCTAAGTTACACCCTAGAATGTTCTTT  1050
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TAT-CATCTTCTATACTCATACCTAAGTTACACCCTAGAATGTTCTTT  1044

seq1  CCTAACTTTCTACAATAATTTAAAAAATTGATACTTTTCTTTTTACAAAA  1100
       ||||| ||||||||||||||  ||||| |||||||||||||||||||| 
seq2  -CTAAC-TTCTACAATAATTT--AAAATGGATACTTTTCTTTTTACAAA-  1089

seq1  TATGCTTAAATTTAT  1115
        ||||||| |||||
seq2  -TTGCTTAATTTTAT  1103