BAC Information

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BAC

Clone NameB6Ng01-047K03
ChromosomeX (Build37)
Map Location 100,646,256 - 100,807,412
singlet/doubletdoublet
Overlap geneTsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik
Upstream geneHdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx
Downstream geneCnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542, Uprt, Zdhhc15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047K03.bB6Ng01-047K03.g
ACCDH872443DH872444
length1,073610
definitionDH872443|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K03, 5' end.DH872444|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,806,327 - 100,807,412)(100,646,256 - 100,646,865)
sequence
gaattcctcattcctagatttgtaggggacattttactgtatttgcttta
tcttattcattcctgattgttgggcttttttttttaaagttcattttcat
ttcatttgtatctgatttatcagggtgcagaaaaacagcttcttttttat
ttttttctcatatattttccatgatgagatgaatattaattagcacagcc
tacctaaatacaaccatttagcttttgaaagcatggcttctgctcattgt
ttgctgaaaatcataagaggaagggaagctgtaaagccaggcttagtact
ctaggcaggccccatcccagtctgcctcaagtactttgtgctggctaagt
gtctacaacaaaaggaaaagttgaaataccaaagaaggtagaattagcat
tagcataactttgaattccagtgatcaggactttacattcacaatgcttg
tagttttcctttagtcaattggataaattagaaaagaggacaaaatccca
ctgtggcatctttactcccatgtagggagtcgctgtggggtgtaagcaga
atggcttgcggttacacagagaagcccaggttgaaaaacaacaaacagcc
aggcaatcccagcacttgggaggcagaggcaggcggatttcttgagcttt
gaggccagcccagtctacagagtgagtttctagggacaggccagggctac
accagagaaaccctatctcaaaaaaaaaaaaacaaacaaacaaaaataaa
aacaaaaactaaaaaccaaaacaaagcccagcaagatggctgtttatttt
tatcttgaactctgtttgccttggtgtttgttaccttaatttagtggaaa
agcaagattccacatcatagtcccttttttttatttcccttagaattagg
atttaatattcaattgcagggtattaatgccaaagtattgtatttagggg
atatataaaagttttatgatgggcgtgttcacgatttgataccgtagtta
tggaaattctgttcccgcgctgaattattattaacttggtgtattcattc
caatacaagctgctgaaattaaa
gaattctctaaaacttacagaaggaataatttcaatttaatttcaaataa
taatttcaatttcaactaggtgtctcacactgaacttctgacttctaaaa
ttataaggttatagatctgtgttgctttaagccaccaagtttgttggggg
cttaaacaaatacagcactgtagtgctacctgtgtctctgtatcttcgta
gaggttaaggtggttatgaagacatccagaaaaggaatcatgagataggc
taaggcacagagtatgtcttttatttacagtttctttgtagaacaccttt
acctaatgtcttaatcagctaattagcatagtaaaatacaactttgggta
gttagagaacaaatagtgtgtcatagctcaagaggctagacctctctaaa
atggaggttgggttctggtgttatcccttcctgtcttcctggattgtgaa
tggctgccttctggctgccctgcgtctggtaaagagacagacaggtttag
gctccattcttaagacctcatttgatttgaaattacgtcttttatttaaa
ggttttatgtacatatgcagtcaaattcgaatggtttctttcttgcgctt
gtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_100806327_100807412
seq2: B6Ng01-047K03.b_45_1117 (reverse)

seq1  TTTATTTTCAGCAGCTTTGTCATTGTACATGAATACACCAAGTTTTATTT  50
      |||| |||||||||| |||| |||| | ||||||||||||||||     |
seq2  TTTAATTTCAGCAGC-TTGT-ATTGGA-ATGAATACACCAAGTT---AAT  44

seq1  AATAATTTCCTACGCGTGAACAGATTTTTCCATTACTTACGGCTATCAAA  100
      |||||||  |  |||| |||||||  ||||||| || ||||| |||||||
seq2  AATAATT--CAGCGCGGGAACAGA-ATTTCCATAAC-TACGG-TATCAAA  89

seq1  TCTGTGAACACGCCCATCCTTAAAACTTTTTATATAT-CCCTAAATAC-A  148
      || |||||||||||||| | |||||| |||||||||| |||||||||| |
seq2  TC-GTGAACACGCCCAT-CATAAAAC-TTTTATATATCCCCTAAATACAA  136

seq1  TACTTTGGCATATATACCCTGCAA-TGAATA-TAAATCTTTATTTCTAAG  196
      |||||||||||  ||||||||||| |||||| ||||||  || |||||||
seq2  TACTTTGGCATTAATACCCTGCAATTGAATATTAAATC-CTAATTCTAAG  185

seq1  GGAAATAAAAAAAAGGGACTATGATGTGGATTCTGCCTTTTCACTTAAAT  246
      |||||||||||||||||||||||||||||| |||  ||||||   |||||
seq2  GGAAATAAAAAAAAGGGACTATGATGTGGAATCTTGCTTTTCCACTAAAT  235

seq1  TAAGGTAACAAACACAGAGGCAACCAGAGTTCAAGATAAAAATAAACAGC  296
      |||||||||||||||  |||||| ||||||||||||||||||||||||||
seq2  TAAGGTAACAAACACCAAGGCAAACAGAGTTCAAGATAAAAATAAACAGC  285

seq1  CATCTTGCTTGGGCTTTGTTTTTGTGTTTTTTTGTTTTTTGTTTTTATTT  346
      |||||||| ||||||||||||| |    |||||  |||||||||||||||
seq2  CATCTTGC-TGGGCTTTGTTTTGG----TTTTTAGTTTTTGTTTTTATTT  330

seq1  TTGTTTTGTTTTGTTTTTTTTTTTTTTGAGATAGGGTTTCTCT-GTGTAG  395
      ||| |||||||   ||||||||||||||||||||||||||||| ||||||
seq2  TTG-TTTGTTT--GTTTTTTTTTTTTTGAGATAGGGTTTCTCTGGTGTAG  377

seq1  CCCTGG-CTGT-CCTAG-AACTCACTCTGTAGACTGGGCTGGCCTC-AAG  441
      |||||| |||| ||||| |||||||||||||||||||||||||||| |||
seq2  CCCTGGCCTGTCCCTAGAAACTCACTCTGTAGACTGGGCTGGCCTCAAAG  427

seq1  CTC-AGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTGCCTGGCT  490
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTGCCTGGCT  477

seq1  GTTTGTTGTTTTTCAACCTGGGCTTCTCTGTGTAACCGCAAGCCATTCTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGTTTTTCAACCTGGGCTTCTCTGTGTAACCGCAAGCCATTCTG  527

seq1  CTTACACCCCACAGCGACTCCCTACATGGGAGTAAAGATGCCACAGTGGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACCCCACAGCGACTCCCTACATGGGAGTAAAGATGCCACAGTGGG  577

seq1  ATTTTGTCCTCTTTTCTAATTTATCCAATTGACTAAAGGAAAACTACAAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCCTCTTTTCTAATTTATCCAATTGACTAAAGGAAAACTACAAG  627

seq1  CATTGTGAATGTAAAGTCCTGATCACTGGAATTCAAAGTTATGCTAATGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGAATGTAAAGTCCTGATCACTGGAATTCAAAGTTATGCTAATGC  677

seq1  TAATTCTACCTTCTTTGGTATTTCAACTTTTCCTTTTGTTGTAGACACTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTACCTTCTTTGGTATTTCAACTTTTCCTTTTGTTGTAGACACTT  727

seq1  AGCCAGCACAAAGTACTTGAGGCAGACTGGGATGGGGCCTGCCTAGAGTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCACAAAGTACTTGAGGCAGACTGGGATGGGGCCTGCCTAGAGTA  777

seq1  CTAAGCCTGGCTTTACAGCTTCCCTTCCTCTTATGATTTTCAGCAAACAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCTGGCTTTACAGCTTCCCTTCCTCTTATGATTTTCAGCAAACAA  827

seq1  TGAGCAGAAGCCATGCTTTCAAAAGCTAAATGGTTGTATTTAGGTAGGCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAAGCCATGCTTTCAAAAGCTAAATGGTTGTATTTAGGTAGGCT  877

seq1  GTGCTAATTAATATTCATCTCATCATGGAAAATATATGAGAAAAAAATAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAATTAATATTCATCTCATCATGGAAAATATATGAGAAAAAAATAA  927

seq1  AAAAGAAGCTGTTTTTCTGCACCCTGATAAATCAGATACAAATGAAATGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGCTGTTTTTCTGCACCCTGATAAATCAGATACAAATGAAATGA  977

seq1  AAATGAACTTTAAAAAAAAAAGCCCAACAATCAGGAATGAATAAGATAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACTTTAAAAAAAAAAGCCCAACAATCAGGAATGAATAAGATAAA  1027

seq1  GCAAATACAGTAAAATGTCCCCTACAAATCTAGGAATGAGGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATACAGTAAAATGTCCCCTACAAATCTAGGAATGAGGAATTC  1073

seq1: chrX_100646256_100646865
seq2: B6Ng01-047K03.g_69_678

seq1  GAATTCTCTAAAACTTACAGAAGGAATAATTTCAATTTAATTTCAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAAACTTACAGAAGGAATAATTTCAATTTAATTTCAAATAA  50

seq1  TAATTTCAATTTCAACTAGGTGTCTCACACTGAACTTCTGACTTCTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAATTTCAACTAGGTGTCTCACACTGAACTTCTGACTTCTAAAA  100

seq1  TTATAAGGTTATAGATCTGTGTTGCTTTAAGCCACCAAGTTTGTTGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGGTTATAGATCTGTGTTGCTTTAAGCCACCAAGTTTGTTGGGGG  150

seq1  CTTAAACAAATACAGCACTGTAGTGCTACCTGTGTCTCTGTATCTTCGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACAAATACAGCACTGTAGTGCTACCTGTGTCTCTGTATCTTCGTA  200

seq1  GAGGTTAAGGTGGTTATGAAGACATCCAGAAAAGGAATCATGAGATAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAAGGTGGTTATGAAGACATCCAGAAAAGGAATCATGAGATAGGC  250

seq1  TAAGGCACAGAGTATGTCTTTTATTTACAGTTTCTTTGTAGAACACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCACAGAGTATGTCTTTTATTTACAGTTTCTTTGTAGAACACCTTT  300

seq1  ACCTAATGTCTTAATCAGCTAATTAGCATAGTAAAATACAACTTTGGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATGTCTTAATCAGCTAATTAGCATAGTAAAATACAACTTTGGGTA  350

seq1  GTTAGAGAACAAATAGTGTGTCATAGCTCAAGAGGCTAGACCTCTCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGAACAAATAGTGTGTCATAGCTCAAGAGGCTAGACCTCTCTAAA  400

seq1  ATGGAGGTTGGGTTCTGGTGTTATCCCTTCCTGTCTTCCTGGATTGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTTGGGTTCTGGTGTTATCCCTTCCTGTCTTCCTGGATTGTGAA  450

seq1  TGGCTGCCTTCTGGCTGCCCTGCGTCTGGTAAAGAGACAGACAGGTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCTTCTGGCTGCCCTGCGTCTGGTAAAGAGACAGACAGGTTTAG  500

seq1  GCTCCATTCTTAAGACCTCATTTGATTTGAAATTACGTCTTTTATTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATTCTTAAGACCTCATTTGATTTGAAATTACGTCTTTTATTTAAA  550

seq1  GGTTTTATGTACATATGCAGTCAAATTCGAATGGTTTCTTTCTTGCGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATGTACATATGCAGTCAAATTCGAATGGTTTCTTTCTTGCGCTT  600

seq1  GTGTGTGTGT  610
      ||||||||||
seq2  GTGTGTGTGT  610