BAC Information

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BAC

Clone NameB6Ng01-048C22
ChromosomeX (Build37)
Map Location 45,481,099 - 45,609,141
singlet/doubletdoublet
Overlap geneXpnpep2, 1200013B08Rik, Zdhhc9
Upstream geneEG434775, LOC236775, LOC100040133, LOC100040145, EG624187, Smarca1, LOC676253, Ocrl, LOC270596, LOC665672, Apln
Downstream geneUtp14a, LOC637576, Bcorl1, Elf4, Aifm1, Rab33a, Suhw3, Slc25a14, Gpr119, Rbmx2, LOC665752, Gm595, EG637758, LOC100040295, Enox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048C22.bB6Ng01-048C22.g
ACCDH872817DH872818
length9071,018
definitionDH872817|Mus musculus domesticus DNA, BAC clone: B6Ng01-048C22, 5' end.DH872818|Mus musculus domesticus DNA, BAC clone: B6Ng01-048C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,608,226 - 45,609,141)(45,481,099 - 45,482,156)
sequence
gaattcctttcaccatctggctgcaggggattaaatttaggttgtcaggg
ttggggggagggtgtcaaatgcttttgaccagcctgagacttcttgcata
aaaacattattgccatttcttttaggtcatttccattttgttttctccaa
cggttgcactgaaatttcttatggtaatcggcaatgctctaaaattctta
aataaaataatactttctagtctttgtggtcccagaattgaatatgggat
ttgatagttgtttttgtttttcattattcattcagtaaaatttttttaat
cattgactatgtgccaggtttttaggagttattgatacattgttgaacaa
agcagatattttctatggtttcatagacacaattttccagtgggcttaag
gacaattttttaaaaattatttatttttactttacatcctgctcactgct
cccctcccagtcaattttaaatgttgctaaaactctagcccagagttccc
ctgactgctctctcctggtatcctctatgatggtagctcttgaaccatct
tcttccattttctttctttcttttttgttttttttgttttgttttttgtt
ttttgtttttcaagacagggtttctctgtgtagccctggctgtcctggca
ctcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctct
gcctcccgagtactgggattaaatgtgtgcgccaccacacccggctcttc
ttccatttcttgttgtgtggcttctaataaacttatgccctaagtgatgc
tattcctagagcttactcttggcctctatgtttgtccctatgtctccctg
gggcaattgctttaaaactgattattgaactgaaatctacacttctagct
tatatgg
gaattccaagccatgcccatagccaagagcatcttatgcggagtcagcat
tttctctagcctggctttaaccaaatcttggggaaggagacaacctcaca
gcctaatggcttcagtggcctcatctttaataaggaagcctgctctgctg
ccctctgtggggagatgcagaagtgtcctataaatagtaaagggctatga
ctgtggaaaggttaggatattgtcatcgttctcaacctcagtcttcccat
ctgtaatttattgagataaatagatagatagatagatagatagatagaca
gacagacagacagatagacagagataggcaatgccctgaacatagtgact
tttaccttaagaactctactaagtctctttgttacgtggatgctgagata
tgattctaatggtggtacctatcctctatccccctcccatccatcaacct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttctctcttcctttccctcttcctgacacgat
ctcactgtgtagcccagactggcattgccatcacaatcttcctaactaat
tctcctgcataccaagattacaggcctgcaccaccatgcccagttctctc
tcttccttttgcccttccacatgtcctattccagcccagtcactcaaagc
ccagtagaaacaaacaatagaaaatacacaggaagaccatggccctgggc
cctccacccaagtcctcagcagaattagatgtattagttctctctctcca
cagggatgggaccacagatatcaccagacagtacattgggcactctactg
cttcaaagtagtgctgaccctaattttcccttcagttactcagtgatcac
tcatcagagcccttcaatgacagagtaaacgagccagagagtgattagtt
gctcagtcaacaaaagtacagaaagcatgcaaatcggcctccaccagacc
tcagcagtgcatcctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_45608226_45609141
seq2: B6Ng01-048C22.b_46_951 (reverse)

seq1  CATATAAGCTAGAAGTGTAGATTTTCAAGTTCATATATCAGTTTTAAAAG  50
      ||||||||||||||||||||||||   ||||||   ||||||||| ||||
seq2  CATATAAGCTAGAAGTGTAGATTT--CAGTTCAATAATCAGTTTT-AAAG  47

seq1  CAATTTGCCCCAGGGAGAACATAGGGAACAAACATAGAGGGCCAAGAGTA  100
      ||| ||||||||||||| |||||||| ||||||||||| |||||||||||
seq2  CAA-TTGCCCCAGGGAG-ACATAGGG-ACAAACATAGA-GGCCAAGAGTA  93

seq1  AGCTTCTAGGGAATAGCATCACTTAGGGCATAAGTTTATTAGAAG-CACA  149
      ||| |||| |||||||||||||||||||||||||||||||||||| ||||
seq2  AGC-TCTA-GGAATAGCATCACTTAGGGCATAAGTTTATTAGAAGCCACA  141

seq1  CAACAAAGAAAATGGAAGAAGAGCCGGGTGTGGTGGCGCACACATTTAAT  199
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  CAACAA--GAAATGGAAGAAGAGCCGGGTGTGGTGGCGCACACATTTAAT  189

seq1  CCCAGTACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGC  239

seq1  CTGGTCTACAAAGTGAGTGCCAGGACAGCCAGGGCTACACAGAGAAACCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAAAGTGAGTGCCAGGACAGCCAGGGCTACACAGAGAAACCC  289

seq1  TGTCTTGAAAAACAAAAAAACAAAAAACAAAACAAAAAAAACAAAAAAGA  349
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGAAAAAC-AAAAAACAAAAAACAAAACAAAAAAAACAAAAAAGA  338

seq1  AAGAAAGAAAATGGAAGAAGATGGTCATAGAGCTACCATCATAGAGGATA  399
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  AAGAAAGAAAATGGAAGAAGATGGTTCAAGAGCTACCATCATAGAGGATA  388

seq1  CCAGGAGAGAGCAGTCA-GGGAACTCTGGGCTAGAGTTTTAGCAACATTT  448
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAGGAGAGAGCAGTCAGGGGAACTCTGGGCTAGAGTTTTAGCAACATTT  438

seq1  AAAATTGACTGGGAGGGGAGCAGTGAGCAGGATGTAAAGTAAAAATAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGACTGGGAGGGGAGCAGTGAGCAGGATGTAAAGTAAAAATAAAT  488

seq1  AATTTTTAAAAAATTGTCCTTAAGCCCACTGGAAAATTGTGTCTATGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAAAAATTGTCCTTAAGCCCACTGGAAAATTGTGTCTATGAAA  538

seq1  CCATAGAAAATATCTGCTTTGTTCAACAATGTATCAATAACTCCTAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAAATATCTGCTTTGTTCAACAATGTATCAATAACTCCTAAAAA  588

seq1  CCTGGCACATAGTCAATGATTAAAAAAATTTTACTGAATGAATAATGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACATAGTCAATGATTAAAAAAATTTTACTGAATGAATAATGAAA  638

seq1  AACAAAAACAACTATCAAATCCCATATTCAATTCTGGGACCACAAAGACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAACTATCAAATCCCATATTCAATTCTGGGACCACAAAGACT  688

seq1  AGAAAGTATTATTTTATTTAAGAATTTTAGAGCATTGCCGATTACCATAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTATTATTTTATTTAAGAATTTTAGAGCATTGCCGATTACCATAA  738

seq1  GAAATTTCAGTGCAACCGTTGGAGAAAACAAAATGGAAATGACCTAAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCAGTGCAACCGTTGGAGAAAACAAAATGGAAATGACCTAAAAG  788

seq1  AAATGGCAATAATGTTTTTATGCAAGAAGTCTCAGGCTGGTCAAAAGCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCAATAATGTTTTTATGCAAGAAGTCTCAGGCTGGTCAAAAGCAT  838

seq1  TTGACACCCTCCCCCCAACCCTGACAACCTAAATTTAATCCCCTGCAGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACCCTCCCCCCAACCCTGACAACCTAAATTTAATCCCCTGCAGCC  888

seq1  AGATGGTGAAAGGAATTC  916
      ||||||||||||||||||
seq2  AGATGGTGAAAGGAATTC  906

seq1: chrX_45481099_45482156
seq2: B6Ng01-048C22.g_66_1083

seq1  GAATTCCAAGCCATGCCCATAGCCAAGAGCATCTTATGCGGAGTCAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCATGCCCATAGCCAAGAGCATCTTATGCGGAGTCAGCAT  50

seq1  TTTCTCTAGCCTGGCTTTAACCAAATCTTGGGGAAGGAGACAACCTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAGCCTGGCTTTAACCAAATCTTGGGGAAGGAGACAACCTCACA  100

seq1  GCCTAATGGCTTCAGTGGCCTCATCTTTAATAAGGAAGCCTGCTCTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATGGCTTCAGTGGCCTCATCTTTAATAAGGAAGCCTGCTCTGCTG  150

seq1  CCCTCTGTGGGGAGATGCAGAAGTGTCCTATAAATAGTAAAGGGCTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTGGGGAGATGCAGAAGTGTCCTATAAATAGTAAAGGGCTATGA  200

seq1  CTGTGGAAAGGTTAGGATATTGTCATCGTTCTCAACCTCAGTCTTCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAAGGTTAGGATATTGTCATCGTTCTCAACCTCAGTCTTCCCAT  250

seq1  CTGTAATTTATTGAGATAAATAGATAGATAGATAGATAGATAGATAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTTATTGAGATAAATAGATAGATAGATAGATAGATAGATAGACA  300

seq1  GACAGACAGACAGATAGACAGAGATAGGCAATGCCCTGAACATAGTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGACAGATAGACAGAGATAGGCAATGCCCTGAACATAGTGACT  350

seq1  TTTACCTTAAGAACTCTACTAAGTCTCTTTGTTACGTGGATGCTGAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTAAGAACTCTACTAAGTCTCTTTGTTACGTGGATGCTGAGATA  400

seq1  TGATTCTAATGGTGGTACCTATCCTCTATCCCCCTCCCATCCATCAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTAATGGTGGTACCTATCCTCTATCCCCCTCCCATCCATCAACCT  450

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  500

seq1  CTTTCTTTCTTTCTTTCTTTCTCTCTTCCTTTCCCTCTTCCTGACACGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTCTCTTCCTTTCCCTCTTCCTGACACGAT  550

seq1  CTCACTGTGTAGCCCAGACTGGCATTGCCATCACAATCTTCCTAACTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTGTAGCCCAGACTGGCATTGCCATCACAATCTTCCTAACTAAT  600

seq1  TCTCCTGCATACCAAGATTACAGGCCTGCACCACCATGCCCAGTTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCATACCAAGATTACAGGCCTGCACCACCATGCCCAGTTCTCTC  650

seq1  TCTTCCTTTTGCCCTTCCACATGTCCTATTCCAGCCCAGTCACTCAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTTGCCCTTCCACATGTCCTATTCCAGCCCAGTCACTCAAAGC  700

seq1  CCAGTAGAAACAAACAATAGAAAATACACAGGAAGACCATGGCCCTGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGAAACAAACAATAGAAAATACACAGGAAGACCATGGCCCTGGGC  750

seq1  CCTCCACCCAAGTCCTCAGCAGAATTAGATGTATTAGTTCTCTCTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCCAAGTCCTCAGCAGAATTAGATGTATTAGTTCTCTCTCTCCA  800

seq1  CAGGGATGGGACCACAGATATCACCAGAACAGTACATTGGGGCACTCCTA  850
      ||||||||||||||||||||||||||| |||||||||| ||||||| |||
seq2  CAGGGATGGGACCACAGATATCACCAG-ACAGTACATT-GGGCACT-CTA  847

seq1  CTGCCTTCCAAAAGGTAAGTGCTGGACCCTAATTTTTCCCTTCAGTTTAC  900
      ||| ||||  ||||   |||||| |||||||| |||||||||||| ||||
seq2  CTG-CTTC--AAAG--TAGTGCT-GACCCTAA-TTTTCCCTTCAG-TTAC  889

seq1  TCCAAGTGATCACCTCATCAAGAGCCCTTTCAAATTGACAGGAGTAAAAC  950
      ||  |||||||| |||||| ||||||| |||||  ||||| |||||||  
seq2  TC--AGTGATCA-CTCATC-AGAGCCC-TTCAA--TGACA-GAGTAAA--  929

seq1  CGAGGCCCAGAGAAGTGATTTAGTTTGCCCAAGGTCAAACAAAAAGTACC  1000
      ||||  |||||| ||||| |||| |||| ||  |||||   |||||||| 
seq2  CGAG--CCAGAG-AGTGA-TTAG-TTGCTCA--GTCAA--CAAAAGTAC-  969

seq1  AGGAAAGCCAATGCAAAATCGGGCCTCCACCAAGACCTCAGGCCATGTGC  1050
        ||||||  |||| ||||| |||||||||| |||||||||  || ||||
seq2  -AGAAAGC--ATGC-AAATC-GGCCTCCACC-AGACCTCAG--CA-GTGC  1010

seq1  ATCCTCTT  1058
      ||||||||
seq2  ATCCTCTT  1018