BAC Information

Click to search

BAC

Clone NameB6Ng01-048K08
ChromosomeX (Build37)
Map Location 146,492,695 - 146,592,676
singlet/doubletdoublet
Overlap geneEG666982, EG624631
Upstream geneOtt, LOC666888, LOC100039598, LOC100039890, LOC100039612, EG666923, EG624378, LOC100039934, LOC100039629, LOC382243, EG666961, EG666968, OTTMUSG00000018988, LOC100039651, EG624568, LOC382244, LOC100039669
Downstream geneEG546387, LOC333588, Tmem29, LOC100040101, Alas2, Apex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048K08.bB6Ng01-048K08.g
ACCDH873145DH873146
length730797
definitionDH873145|Mus musculus domesticus DNA, BAC clone: B6Ng01-048K08, 5' end.DH873146|Mus musculus domesticus DNA, BAC clone: B6Ng01-048K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,492,695 - 146,493,426)(146,591,805 - 146,592,676)
sequence
gaattcattacttcatttatttacctcttgtttttttatgtgaaacttca
cagtgtaggggcagcctgtcctgaaacaatactgttgtcaaagactgccc
taatatccaatattcactgagcctggattccaatgcaatttctgcttttg
cagttttagacaagaaattgtagatataatctgtcaagtaatgatcattc
atggatgtgataatttcgtttctttggtttggttttatcctgagtgcggt
aacccaatcacaaaagaactcaaatgatatgttctcactgataagtggat
attagcccagaaacttagaatacacaagatataagatacaattcacgaaa
cacatgaaactcaagaagaatgaagaccaatgtgtggacactttgcccct
tcttaaaattgggaacaaaacacccatggaaggaattacagagacaaagt
ttggagctgagaaaaaaggatgtactatatagagactgccatatccaggg
atccatcccataatcagcctccaacctctgacaccattgcatacactagc
aagattttgcttaaggaccctgatatagctgtctcttgtgagactatgct
agtgcctagcaaacacagaagtggatgctcacagtcagctactggatgga
tcatagggcccccaattggaggagctagagaaagtacccaagaaccaaag
ggaactgcaaccctataggtagaacacaat
gaattcaagaaaaagaaatgtgttaggtttctgttaccccataaagctga
caaggaaaagaaatcctcttccctaggagaaacagaggagtcaaagttca
gatgtgaatgccaacactgccagatgtgtgaggggaacacatctggggtc
tctgtgggacctaggactgaagcagtctctccgtcatcctcctgggaaaa
tctaacactagacctcagtaacttgacactcaaccctcataccacccatc
cccatcttgtgcaagacaccatatccaaaggagagaacaaaatgcagtgc
ccaaggaaaaacaagaggatgtttcaaaaggttctctacgaatggacaga
ataactctgacactgtcatcgtcatgagaaggaagatccaaacctacagg
accatgagtatcaacatcttttggggagcaacatcaggaggagtaatgtc
caacctgttgataataatacagctggatcgtgactcgaatctattccaca
aatgtagccatcttttccttagtagtttaggcatcttcccttaggcactc
tgggaagagatgtggttctcagtaaggacgaccaaattgcaatttttcta
tactccccatgtcagtgttcccatgggatttgctaccgattttcctctcc
tcgggtttgaggttttcctctttacattgttgccaataaagttaaaacat
ctatgtagggtttctggcttgctgttttcaaactgcttcatttcatttta
atacctgtacccagaaggagcacaagcctgatggagtatgtggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_146492695_146493426
seq2: B6Ng01-048K08.b_45_774

seq1  GAATTCATTACTTCATTTATTTACCTCTTGTTTTTTTATGTGAAACTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACTTCATTTATTTACCTCTTGTTTTTTTATGTGAAACTTCA  50

seq1  CAGTGTAGGGGCAGCCTGTCCTGAAACAATACTGTTGTCAAAGACTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGGGGCAGCCTGTCCTGAAACAATACTGTTGTCAAAGACTGCCC  100

seq1  TAATATCCAATATTCACTGAGCCTGGATTCCAATGCAATTTCTGCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCAATATTCACTGAGCCTGGATTCCAATGCAATTTCTGCTTTTG  150

seq1  CAGTTTTAGACAAGAAATTGTAGATATAATCTGTCAAGTAATGATCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTAGACAAGAAATTGTAGATATAATCTGTCAAGTAATGATCATTC  200

seq1  ATGGATGTGATAATTTCGTTTCTTTGGTTTGGTTTTATCCTGAGTGCGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTGATAATTTCGTTTCTTTGGTTTGGTTTTATCCTGAGTGCGGT  250

seq1  AACCCAATCACAAAAGAACTCAAATGATATGTTCTCACTGATAAGTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAATCACAAAAGAACTCAAATGATATGTTCTCACTGATAAGTGGAT  300

seq1  ATTAGCCCAGAAACTTAGAATACACAAGATATAAGATACAATTCACGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCAGAAACTTAGAATACACAAGATATAAGATACAATTCACGAAA  350

seq1  CACATGAAACTCAAGAAGAATGAAGACCAATGTGTGGACACTTTGCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAACTCAAGAAGAATGAAGACCAATGTGTGGACACTTTGCCCCT  400

seq1  TCTTAAAATTGGGAACAAAACACCCATGGAAGGAATTACAGAGACAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATTGGGAACAAAACACCCATGGAAGGAATTACAGAGACAAAGT  450

seq1  TTGGAGCTGAGAAAAAAGGATGTACTATATAGAGACTGCCATATCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTGAGAAAAAAGGATGTACTATATAGAGACTGCCATATCCAGGG  500

seq1  ATCCATCCCATAATCAGCCTCCAACCTCTGACACCATTGCATACACTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCCATAATCAGCCTCCAACCTCTGACACCATTGCATACACTAGC  550

seq1  AAGATTTTGCTTAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATGC  600
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTGCTT-AAGGACCCTGATATAGCTGTCTCTTGTGAGACTATGC  599

seq1  TAGTGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTACTGGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTACTGGATGG  649

seq1  ATCATAGGGCCCCCAA-TGGAGGAGCTAGAGAAAGTACCCAAGGAACCAA  699
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  ATCATAGGGCCCCCAATTGGAGGAGCTAGAGAAAGTACCCAA-GAACCAA  698

seq1  AGGGAACTGCAACCCTATAGGTAGAACAACAAT  732
      ||||||||||||||||||||||||||| |||||
seq2  AGGGAACTGCAACCCTATAGGTAGAAC-ACAAT  730

seq1: chrX_146591805_146592676
seq2: B6Ng01-048K08.g_68_864 (reverse)

seq1  CACACACACATTAACACAGACATACACATACACACACACACACACACACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACACACACACACACACACACACACATACTCCATCAGGCCTTGTGC  100
                          ||||| |||||||||||||||| |||||||
seq2  --------------------CACAC-CACATACTCCATCAGG-CTTGTGC  28

seq1  TCCTTCTGGGTACAAGGTAATAAAATGAAATGGAAGCAGTTTGAAAACAG  150
      ||||||||||||| ||||| ||||||||||| ||||||||||||||||||
seq2  TCCTTCTGGGTAC-AGGTATTAAAATGAAAT-GAAGCAGTTTGAAAACAG  76

seq1  CAAGCCAGAAACCCTACATAGATGTTTTAACTTTATTGGCAACAATGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGAAACCCTACATAGATGTTTTAACTTTATTGGCAACAATGTAA  126

seq1  AGGAGGAAAACCTCAAACCCGAGGAGAGGAAAATCGGTAGCAAATCCCAT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GAGGAAAACCTCAAACCCGAGGAGAGGAAAATCGGTAGCAAATCCCAT  175

seq1  GGGAACACTGACATGGGGAGTATAGAAAAATTGCAATTTGGTCGTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACACTGACATGGGGAGTATAGAAAAATTGCAATTTGGTCGTCCTTA  225

seq1  CTGAGAACCACATCTCTTCCCAGAGTGCCTAAGGGAAGATGCCTAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACCACATCTCTTCCCAGAGTGCCTAAGGGAAGATGCCTAAACTA  275

seq1  CTAAGGAAAAGATGGCTACATTTGTGGAATAGATTCGAGTCACGATCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAAAGATGGCTACATTTGTGGAATAGATTCGAGTCACGATCCAG  325

seq1  CTGTATTATTATCAACAGGTTGGACATTACTCCTCCTGATGTTGCTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTATTATCAACAGGTTGGACATTACTCCTCCTGATGTTGCTCCCC  375

seq1  AAAAGATGTTGATACTCATGGTCCTGTAGGTTTGGATCTTCCTTCTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGTTGATACTCATGGTCCTGTAGGTTTGGATCTTCCTTCTCATG  425

seq1  ACGATGACAGTGTCAGAGTTATTCTGTCCATTCGTAGAGAACCTTTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGACAGTGTCAGAGTTATTCTGTCCATTCGTAGAGAACCTTTTGAA  475

seq1  ACATCCTCTTGTTTTTCCTTGGGCACTGCATTTTGTTCTCTCCTTTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCTTGTTTTTCCTTGGGCACTGCATTTTGTTCTCTCCTTTGGAT  525

seq1  ATGGTGTCTTGCACAAGATGGGGATGGGTGGTATGAGGGTTGAGTGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTCTTGCACAAGATGGGGATGGGTGGTATGAGGGTTGAGTGTCAA  575

seq1  GTTACTGAGGTCTAGTGTTAGATTTTCCCAGGAGGATGACGGAGAGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGAGGTCTAGTGTTAGATTTTCCCAGGAGGATGACGGAGAGACTG  625

seq1  CTTCAGTCCTAGGTCCCACAGAGACCCCAGATGTGTTCCCCTCACACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTCCTAGGTCCCACAGAGACCCCAGATGTGTTCCCCTCACACATC  675

seq1  TGGCAGTGTTGGCATTCACATCTGAACTTTGACTCCTCTGTTTCTCCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTGTTGGCATTCACATCTGAACTTTGACTCCTCTGTTTCTCCTAG  725

seq1  GGAAGAGGATTTCTTTTCCTTGTCAGCTTTATGGGGTAACAGAAACCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGATTTCTTTTCCTTGTCAGCTTTATGGGGTAACAGAAACCTAA  775

seq1  CACATTTCTTTTTCTTGAATTC  872
      ||||||||||||||||||||||
seq2  CACATTTCTTTTTCTTGAATTC  797