BAC Information

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BAC

Clone NameB6Ng01-049D13
ChromosomeX (Build37)1 (Build37)
Map Location 119,784,826 - 119,785,34184,984,097 - 84,985,261
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG245575, LOC100039544, Nap1l3
Downstream gene3110007F17Rik, LOC100039751, LOC100039763, LOC665281, EG625591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049D13.bB6Ng01-049D13.g
ACCDH873547DH873548
length9621,147
definitionDH873547|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D13, 5' end.DH873548|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,784,826 - 119,785,341)(84,984,097 - 84,985,261)
sequence
gaattctttaaataaaaaagaatgacagctatatgtgactataaaagact
ttgttttcttttcttctttttttttttctttccattttttattaggtatt
tagctcatttacatttccaatgctataccaaaagtcccccatacacaccc
acccccactcccctacccgcccactccccctttttggccctggcgttccc
ctgttctggggcatataaagtttgtgtgtccaatgggcctctctttccag
tgatggccgactaggccatcttttgatacatatgcagctagagtcaagag
ctccggggtactggttagttcataatgttgatccacctatagggttgcag
atccctttagctccttgggtaatttctctagctcctccattgggagccct
ggaatccatccattagctgactgtgggcatccacttctgtgtttgctagg
ccccggcatagtctcacaagagacagctacatctgggtcctttcgataaa
atcttgctagtgtttgcaatggtgtcagtgtttggatgctgattatgggg
tggatccctggataaggcagtctctacatggtccatcctttcatctcagc
tccaaactttgtctctgtaactccttccaagggtgttttgttcccacttc
taaggaggggcatagtgtccacacttcagtcttcattcttcttgagtttc
atgtgttttaggaaattgtatcttatatcttgggtatcctaggttttggg
ataatatccacttatcagtgagtacatattgtgtgagttcctttgtgaat
gtgttacctcactcaggatgatgccctccaggtccatccatttggctagg
aattcataaattcatttttttatagctgagtagtactccattgtgtagat
gtacacattttctgtatcattcctctgtgaggggcatctgggttctttca
gcttctggctat
gaattcctatcttcttgtggccatctgagggacagccatgagacatgctt
gaggactgggctgggtgagtgagttggagaagggaagtagccaaggtgac
aaggccaaccgttctgtgcccagggccatttctgccttcaggagaagtcg
gtccttctgcatcagtcttggtggtttgctgtatcacctgactgctggac
cactttccttcccaggtccttctccccctccacatgcaaccgatggaatt
ccccaggtttccatccttagctacagtctgtccagatgactagagtcact
ctcctgctgcagtttccacctgtgtccttagcttcatgtgcctcgcctct
ccttagctccttgggttctaatgctcagccacgtctcctctgcaacccac
cctccaatcgccctttgctccttctttggaacttccattttatataacag
tctccatacgccacagacctggggcttcagcctgcctttgtcttatctct
caccttccaaatccatcccatcgtcagtcctatggatactcactttaagt
ttattcaaatttttcctgctccagtaaggtccatcaaatataccaaatag
ggtgttggtaattttttaatggtcatatacgaggaagtattgaaggctgc
cactcagctccatgaagatccttaaagcagagggggaaagaacaggagct
gaccaccacaatggactgtttctgaaagtcccctctccctaaatcctgat
agatgggaaatgtaactgtcacttggcacagatgtgtgtgaatttcaagc
ttaaagctctgtacattctgattggggtcacaggtcagctcccgatcact
gttctgtatccccgatcaatcaatagatgcttgattacaataagtttttt
gttgtggccatagacctggtatttgagttgtgttggatctaagcagactt
tgccgtaactttctcttcaagcagaggctataaacagtcagcatactgtc
agaaagtgctgaccctccttcccctcagacagggagcaaggaacatgttc
tgaaaacttaccatcctggtgtagattaatgttgcagcttgaccgcgtgt
aatcactaggaatagtacatctgtttagccttattgtgccctgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_119784826_119785341
seq2: B6Ng01-049D13.b_95_609

seq1  TTTGTTTTCTTTTCTTTTTTTTTTTTTTTCTTTCCAGTTTTTATTAGGTA  50
      |||||||||||||| || |||||||||||||||||| |||||||||||||
seq2  TTTGTTTTCTTTTC-TTCTTTTTTTTTTTCTTTCCATTTTTTATTAGGTA  49

seq1  TTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCAC  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACACAC  99

seq1  CCACCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTTC  149

seq1  CCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCC  199

seq1  AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  249

seq1  AGCTCCGGGGTACTGGTTAGTTCATAATATTGATCCACCTATAGGGTTGC  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCTCCGGGGTACTGGTTAGTTCATAATGTTGATCCACCTATAGGGTTGC  299

seq1  AGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCC  350
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGATCCCTTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTGGGAGCC  349

seq1  CTGTAATCCATCCATTAGCTGACTGTGGGCATCCACTTCTGTGTTTGCTA  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCCATCCATTAGCTGACTGTGGGCATCCACTTCTGTGTTTGCTA  399

seq1  GGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATA  449

seq1  AAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGG  500
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  AAATCTTGCTAGTGTTTGCAATGGTGTCAGTGTTTGGATGCTGATTATGG  499

seq1  GGTGGATCCCTGGATA  516
      ||||||||||||||||
seq2  GGTGGATCCCTGGATA  515

seq1: chr1_84984097_84985261
seq2: B6Ng01-049D13.g_66_1212

seq1  GAATTCCTACCTTCTTGTGGCCATCTGAGGGACAGCCATGAGACATGCTT  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCTTCTTGTGGCCATCTGAGGGACAGCCATGAGACATGCTT  50

seq1  GAGGACTGGGCTGGGTGAGTGAGTTGGAGAAGGGAAGTAGCCAAGGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGGGCTGGGTGAGTGAGTTGGAGAAGGGAAGTAGCCAAGGTGAC  100

seq1  AAGGCCAACCGTTCTGTGCCCAGGGCCATTTCTGCCTTCAGGAGAAGTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAACCGTTCTGTGCCCAGGGCCATTTCTGCCTTCAGGAGAAGTCG  150

seq1  GTCCTTCTGCATCAGTCTTGGTGGTTTGCTGTATCACCTGACTGCTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTGCATCAGTCTTGGTGGTTTGCTGTATCACCTGACTGCTGGAC  200

seq1  CACTTTCCTTCCCAGGTCCTTCTCCCCCTCCACATGCAACCGATGGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCTTCCCAGGTCCTTCTCCCCCTCCACATGCAACCGATGGAATT  250

seq1  CCCCAGGTTTCCATCCTTAGCTACAGTCTGTCCAGATGACTAGAGTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGTTTCCATCCTTAGCTACAGTCTGTCCAGATGACTAGAGTCACT  300

seq1  CTCCTGCTGCAGTTTCCACCTGTGTCCTTAGCTTCATGTGCCTCGCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTGCAGTTTCCACCTGTGTCCTTAGCTTCATGTGCCTCGCCTCT  350

seq1  CCTTAGCTCCTCGGGTTCTAATGCTCAGCCACGTCTCCTCTGCAACCCAC  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTCCTTGGGTTCTAATGCTCAGCCACGTCTCCTCTGCAACCCAC  400

seq1  CCTCCAATCGCGCTCTGCTCCTTCTTTGGAACTTCCATTTTATATAACAG  450
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  CCTCCAATCGCCCTTTGCTCCTTCTTTGGAACTTCCATTTTATATAACAG  450

seq1  GCTCCATACGCCACAGACCTGGGGCTTCAGCCTGCCTTTGTCTTATCTCT  500
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATACGCCACAGACCTGGGGCTTCAGCCTGCCTTTGTCTTATCTCT  500

seq1  CACCTTCCAAATCCATCCCATCGTCAGTCCTATAGATACTCACTTTAAGT  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACCTTCCAAATCCATCCCATCGTCAGTCCTATGGATACTCACTTTAAGT  550

seq1  TTATTCAAATTTTTCCTGCTCCAGTAAGGTCCATCAAATATACCAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAATTTTTCCTGCTCCAGTAAGGTCCATCAAATATACCAAATAG  600

seq1  GGTGTTGGTAATTTTTTAATGGTCATATACGAGGAAGTATTGAAGGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGGTAATTTTTTAATGGTCATATACGAGGAAGTATTGAAGGCTGC  650

seq1  CACTCAGCTCCATTGAGATCCTTAAAGCAGAGGGGGAAAGAACAGGAGCT  700
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CACTCAGCTCCATGAAGATCCTTAAAGCAGAGGGGGAAAGAACAGGAGCT  700

seq1  GACCACCACAATGGACTGTTTCTGAAAGTCCCCTCTCCCTAAATCCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCACAATGGACTGTTTCTGAAAGTCCCCTCTCCCTAAATCCTGAT  750

seq1  AGATGGGAAATGTAACTGTCACTTGGCACAGATGTGTGTGAATTTCAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGAAATGTAACTGTCACTTGGCACAGATGTGTGTGAATTTCAAGC  800

seq1  TTAAAAGCTCTGTACATTCTGATTGGGGTCACAGGTCAGCTCCCGATCAC  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-AAAGCTCTGTACATTCTGATTGGGGTCACAGGTCAGCTCCCGATCAC  849

seq1  TGTTCTGTATCCCCGATCAATCAATAGATGCTTGATTACAATAAGTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTATCCCCGATCAATCAATAGATGCTTGATTACAATAAGTTTTT  899

seq1  TGTTGTGGCCATAGACCTGGTGTTTGAGTTGTGTTGGATCTAAGCAGACT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTTGTGGCCATAGACCTGGTATTTGAGTTGTGTTGGATCTAAGCAGACT  949

seq1  TTGCCGTAACTCTTCTCTTCAAAGCAGAGGCTAATAAACAGTCAGCATTA  1000
      ||||||||||| |||||||| ||||||||||| |||||||||||||| ||
seq2  TTGCCGTAACT-TTCTCTTC-AAGCAGAGGCT-ATAAACAGTCAGCA-TA  995

seq1  CTGTCAAGAAAGTGCTGACCCCCCTTCCCCTCCAGGACAAGGGAGCAAAG  1050
      ||||| ||||||||||||||| ||||||||||   ||| |||||||||  
seq2  CTGTC-AGAAAGTGCTGACCCTCCTTCCCCTC--AGAC-AGGGAGCAA--  1039

seq1  GAAACAATGTCTGAAAACCTTACATCCTGGTGAGGATTAATGTTGCCAGC  1100
      | ||||   ||||||||| |  ||||||||||  ||||||||||| ||||
seq2  GGAACATGTTCTGAAAACTTACCATCCTGGTGTAGATTAATGTTG-CAGC  1088

seq1  TTGACAGGCATTGTAGCCACCTAGGAGATGAGGTACATCTGTGAGGCCTT  1150
      ||||| |    ||||  || |||||| ||   ||||||||||   |||||
seq2  TTGACCG--CGTGTAATCA-CTAGGA-AT--AGTACATCTGTTTAGCCTT  1132

seq1  A-TGTGCCTCTGGGTG  1165
      | |||||| |||||||
seq2  ATTGTGCC-CTGGGTG  1147