BAC Information

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BAC

Clone NameB6Ng01-049M16
ChromosomeX (Build37)
Map Location 163,315,188 - 163,316,247
singlet/doubletsinglet
Overlap genenone
Upstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660
Downstream geneLOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311, Frmpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049M16.bB6Ng01-049M16.g
ACCDH873952DH873953
length1,1461,045
definitionDH873952|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M16, 5' end.DH873953|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggactcatgctccactgt
tcatagcagccttatttataatagccagaagctggaaagaacctagatgc
ccctcaacagaggaatggatacagaaaatgtggtacatctacacaatgga
gtactactcagctattaaaaagaatgaatttatgaagttcctagccaaat
ggatggacctggagggcatcatcctgagtgaggtaacacattcacaaaga
aactcacacaatatgtattcactgataagtggatattagccccaaaccta
ggatacccaagatataagatataatttgttaaacacatgaaactcaagaa
gaatgaagactgaagtgtggacactatgcccctccttagatttgggaaca
aaacacccatggaaggagttacagagccaaagtttggagctgagatgaaa
ggatggaccatgtagagactgccatatccagggatccaccccataatcag
catccaaatgctgacaccattgcatacactagcaagattttattgaaagg
acccagatgtagctgtctctgtgagactatgccgggctagcaacaaagag
tggatgctcacagtcagctaatgatgatcataggctccatgagagctaga
gaagtagccagaggctaaagggatctgcaccctatagtggaacaacattt
ggaactaacagtacccggagctcttgatctagctgcatatatatcaaaaa
tgctaatccgccctactgaagaagagccattgacttgcaactttatggcc
ataccaggaataccaggccataaaggggatggtggtcagggattgt
gaattcaagggaaactaactgtttagaatgttcaccatgtcaaagatgaa
aggagaggaaagggctggctgaggctgttgagggccccaacatcagaaca
taaagaaccttaaatgactctagaagatatagagaccagaggatttgaca
ggtattgggtttaaatagaattgtgtcttcattattgtagtgactgatac
attatgaaacaatccaaagaatagaggatagagtccttaaccatggtaat
actgactgaatactgtaaataactagataagtaaaatattgctacttagg
tattaaatgtgtattgaaacttccaactaagaagtaacaactgtcctaag
catacaagcaagcatgatattttgtggatatccaggtaagtgatcatggt
agtccaagctacaatattaagtctaagatttctcaatagtccaattgaag
ttgatggttgatgatatactttaccctgtttgtgaacatgttattttcat
tttgttctgggggtcatggtgaacctaaccacaaaaatgactatggtatt
ttcagcaatctggcaaaaagattattgttcacttgacttctaggcgtaac
atatctttcagctatacaatggagagagagtggtgactttatttttctaa
aagtggatgaccatgaagatggcagctgtcccactaagaaattattaagt
atatagtaattaacattttttaaactacccaatgttaagagatgaatcac
aaacaatatttttctgggtaatttgtaaggtcttcatgtaagaatgttgc
ctaaaattttagatttggtgtctctacgtgcctgttagagaagacttgtc
tgtcccaagcacttgtattgaccaaatatttttacatgttctaaggaagc
ctttctgtaaatctgaaagtgatgggaactttgagataccctgtaggtcc
tactaatcatgtaatgcccatagaatttcaggcgtccatggaaaagtggc
cccaatatgatgcattacatgtttccaatttgactttgcaagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_163315188_163316247
seq2: B6Ng01-049M16.g_68_1112 (reverse)

seq1  CATC-TGCAAAGTCAAATATGTGAAAACAATGTAATGGCAATCATAATTG  49
      |||| |||||||||||||   || |||| ||||||||   ||||| ||||
seq2  CATCTTGCAAAGTCAAAT---TGGAAAC-ATGTAATG--CATCAT-ATTG  43

seq1  TGGGCACATCTTTCATAGAACGCCTGAAAATCTTATGGGCATTAACATGA  99
       || ||| | || ||| | |||||||||| || |||||||||| ||||||
seq2  GGGCCAC-TTTTCCAT-GGACGCCTGAAATTC-TATGGGCATT-ACATGA  89

seq1  TTTAAGTTAGTACTTACAGGGTATCCTCAAAGTTCCACATACAC-TTCAG  148
      ||  || ||| || |||||||||| ||||||||||| ||| ||| |||||
seq2  TT--AG-TAGGACCTACAGGGTAT-CTCAAAGTTCC-CAT-CACTTTCAG  133

seq1  ATTTACCAGAAGGTCTTCCTTAGAAACATGTAAAATATTTTGGTCAATAC  198
      ||||| ||||| | ||||||||| |||||||||||   ||||||||||||
seq2  ATTTA-CAGAAAGGCTTCCTTAG-AACATGTAAAAATATTTGGTCAATAC  181

seq1  -AGTGCCTTGTGACAGACAAGTCTTCTCTAATCAGGCCACGTAGAGACAC  247
       |||| |||| |||||||||||||||||||| |||| |||||||||||| 
seq2  AAGTG-CTTGGGACAGACAAGTCTTCTCTAA-CAGG-CACGTAGAGACA-  227

seq1  CCATATCTAACAGTTTTAGGCAACA-TCTTACATGAAGACC-TACAAATT  295
      ||| |||||| | |||||||||||| ||||||||||||||| ||||||||
seq2  CCAAATCTAA-AATTTTAGGCAACATTCTTACATGAAGACCTTACAAATT  276

seq1  ACCCAGAAAAATATTGTTTGTGATTCATCTCTT-ACATT-GGTAGTTTAA  343
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  ACCCAGAAAAATATTGTTTGTGATTCATCTCTTAACATTGGGTAGTTTAA  326

seq1  AATATGTTAATTACTATATAC-TAATAATTTCTTAGTGGGACAGCTGCCA  392
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAATGTTAATTACTATATACTTAATAATTTCTTAGTGGGACAGCTGCCA  376

seq1  TCTTCATGGTCATCCACTTTTAGTAACATAAGGTCACCACTCTCTCTCCA  442
      ||||||||||||||||||||||| || |||| ||||||||||||||||||
seq2  TCTTCATGGTCATCCACTTTTAGAAAAATAAAGTCACCACTCTCTCTCCA  426

seq1  TTGTATAGCTGAAAGATATGTTACGCCTAGAAGTCAAGTGAACAATAATC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGCTGAAAGATATGTTACGCCTAGAAGTCAAGTGAACAATAATC  476

seq1  TTTTTGCCAGATTGCTGAAAATACCATAGTCATTTTTGTGGTTAGGTTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCAGATTGCTGAAAATACCATAGTCATTTTTGTGGTTAGGTTCA  526

seq1  CCATGACCCCCAGAACAAAATG-AAATAACATGTTCACAAACAGGGTAAA  591
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCATGACCCCCAGAACAAAATGAAAATAACATGTTCACAAACAGGGTAAA  576

seq1  GTATATCATCAACCATCAACTTCAATTGGACTATTGAGAAATCTTAGACT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCATCAACCATCAACTTCAATTGGACTATTGAGAAATCTTAGACT  626

seq1  TAATATTGTAGCTTGGACTACCATGATCACTTACCTGGATATCCACAAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGTAGCTTGGACTACCATGATCACTTACCTGGATATCCACAAAA  676

seq1  TATCATGCTTGCTTGTATGCTTAGGACAGTTGTTACTTCTTAGTTGGAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGCTTGCTTGTATGCTTAGGACAGTTGTTACTTCTTAGTTGGAAG  726

seq1  TTTCAATACACATTTAATACCTAAGTAGCAATATTTTACTTATCTAGTTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATACACATTTAATACCTAAGTAGCAATATTTTACTTATCTAGTTA  776

seq1  TTTACAGTATTCAGTCAGTATTACCATGGTTAAGGACTCTATCCTCTATT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTATTCAGTCAGTATTACCATGGTTAAGGACTCTATCCTCTATT  826

seq1  CTTTGGATTGTTTCATAATGTATCAGTCACTACAATAATGAAGACACAAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATTGTTTCATAATGTATCAGTCACTACAATAATGAAGACACAAT  876

seq1  TCTATTTAAACCCAATACCTGTCAAATCCTCTGGTCTCTATATCTTCTAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTAAACCCAATACCTGTCAAATCCTCTGGTCTCTATATCTTCTAG  926

seq1  AGTCATTTAAGGTTCTTTATGTTCTGATGTTGGGGCCCTCAACAGCCTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTAAGGTTCTTTATGTTCTGATGTTGGGGCCCTCAACAGCCTCA  976

seq1  GCCAGCCCTTTCCTCTCCTTTCATCTTTGACATGGTGAACATTCTAAACA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCCTTTCCTCTCCTTTCATCTTTGACATGGTGAACATTCTAAACA  1026

seq1  GTTAGATTCCCTTGAATTC  1060
      ||||| |||||||||||||
seq2  GTTAGTTTCCCTTGAATTC  1045