BAC Information

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BAC

Clone NameB6Ng01-049O07
ChromosomeX (Build37)
Map Location 156,627,730 - 156,779,420
singlet/doubletdoublet
Overlap geneLOC100041403, LOC100041416, LOC100041427
Upstream geneRps6ka3, Eif1ay, Mtap7d2, A830080D01Rik, LOC100041359, Sh3kbp1, LOC667524, Pdha1
Downstream geneGpr64, Phka2, Ppef1, Rs1, Gja6, Scml2, LOC414364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049O07.bB6Ng01-049O07.g
ACCDH874017DH874018
length575998
definitionDH874017|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O07, 5' end.DH874018|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,778,840 - 156,779,420)(156,627,730 - 156,628,749)
sequence
tcatctcagctaaatactttgtctttgagtaatagggttatcaggttcat
tggtttctctcttttgggtctcctgtttctgaatactattctacattggt
ttttgtccatcttctgcattgtgcacaagttacttttataatcagaaata
ccttttgagcagaaacatgtcactgcattatctttaaaccttcatctaag
gtcttacttaactaggactctagggtgatcttggggaagagttgacttgt
tgaatggatttgggagagaagaagggttgggagaacctggtgagcctagg
gctcctgtgataactggccctttatcttcatcctatgatagctctcaggc
ttctggaaccagggagaaagtctcctggtttgtggtcacatgcaggtcac
ctgcatcaaggtgagggaactgtcccactaatatccacccaaagaggtag
acactacttccctctagcaggagaaaaattaaccctccaaaaattaattg
gagtgttgttaaggccctctattccctttttaaaatttagctgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtg
gaattcctactcttatggctcacagggggttgcaaagctactaactggaa
gcaatgatttttcgattatgagaaaagagccaaacgatgcttcatgcgat
tgataatattgtcacttggagaggatcaagactcaactaggagagaaacc
gttgggcatgtttatgaggtatttattcctcagcaagaccccgtgtatac
taggttagtgtggcttgctggatggtgttgtgtaagaaacaaccccttgg
agatggcagcttcccttttggttttttgttttcttttgttttgctttgct
ttgttttacactttcagggttgcttagggttgtatcaggttcctgatata
cgtagctgcgtggggtcatgttctctttcctctaaattctgataagactc
tataaatcacgcctttattatgttttcctcaaacagcacagatggagtgt
gctatttgtctctggctgggatcttgatagtggttgttccgtgagaatgg
ttggttgatctcactgaggtactggatagtaaagaccaaggtggccaatg
tatcaaaccaacctggatgtggtgactcagacagctgcattctgctttag
gagggaagacagtacacaggaaacatgacactcccgttcccctccctgac
tacttcggctaataggctgttggattagtcactttgctaatgagtagttt
tatcctggccctcaatgaaccaggccagacaggggccctacaactcttgg
gaaacctcctgtaaagtttgcagagctaagagctgctagggaccagtgtt
tctatactgcaactatatttggaaacttaattgtcttttaagaaatctca
tgttagaaagtaaagggttttatgataatatgtcaaatagtacactccat
ggcccatgtgcttagtttcatggcttctagatttttatagttacaaaaca
gcaatgaaaagacaccatgagttcactagggtgtgtgtcctctgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_156778840_156779420
seq2: B6Ng01-049O07.b_47_627 (reverse)

seq1  CACACACACACACACACACACACACACACACACAGCTAAATTTTAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAGCTAAATTTTAAAAAG  50

seq1  GGAATAGAGGGCCTTAACAACACTCCAATTAATTTTTGGAGGGTTAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGAGGGCCTTAACAACACTCCAATTAATTTTTGGAGGGTTAATTT  100

seq1  TTCTCCTGCTAGAGGGAAGTAGTGTCTACCTCTTTGGGTGGATATTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGCTAGAGGGAAGTAGTGTCTACCTCTTTGGGTGGATATTAGTG  150

seq1  GGACAGTTCCCTCACCTTGATGCAGGTGACCTGCATGTGACCACAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTCCCTCACCTTGATGCAGGTGACCTGCATGTGACCACAAACCA  200

seq1  GGAGACTTTCTCCCTGGTTCCAGAAGCCTGAGAGCTATCATAGGATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTTTCTCCCTGGTTCCAGAAGCCTGAGAGCTATCATAGGATGAAG  250

seq1  ATAAAGGGCCAGTTATCACAGGAGCCCTAGGCTCACCAGGTTCTCCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGCCAGTTATCACAGGAGCCCTAGGCTCACCAGGTTCTCCCAAC  300

seq1  CCTTCTTCTCTCCCAAATCCATTCAACAAGTCAACTCTTCCCCAAGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCTCTCCCAAATCCATTCAACAAGTCAACTCTTCCCCAAGATCA  350

seq1  CCCTAGAGTCCTAGTTAAGTAAGACCTTAGATGAAGGTTTAAAGATAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGAGTCCTAGTTAAGTAAGACCTTAGATGAAGGTTTAAAGATAATG  400

seq1  CAGTGACATGTTTCTGCTCAAAAGGTATTTCTGATTATAAAAGTAACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACATGTTTCTGCTCAAAAGGTATTTCTGATTATAAAAGTAACTTG  450

seq1  TGCACAATGCAGAAGATGGACAAAAACCAATGTAGAATAGTATTCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAATGCAGAAGATGGACAAAAACCAATGTAGAATAGTATTCAGAAA  500

seq1  CAGGAGACCCAAAAGAGAGAAACCAATGAACCTGATAACCCTATTACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACCCAAAAGAGAGAAACCAATGAACCTGATAACCCTATTACTCA  550

seq1  AAGACAAAGTATTTAGCTGAGATGAGAATTC  581
      |||||||||||||||||||||||||||||||
seq2  AAGACAAAGTATTTAGCTGAGATGAGAATTC  581

seq1: chrX_156627730_156628749
seq2: B6Ng01-049O07.g_70_1067

seq1  GAATTCCTACTCTTATGGCTCACAGGGGGTTGCAAAGCTACTAACTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTCTTATGGCTCACAGGGGGTTGCAAAGCTACTAACTGGAA  50

seq1  GCAATGATTTTTCGATTATGAGAAAAGAGCCAAACGATGCTTCATGCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGATTTTTCGATTATGAGAAAAGAGCCAAACGATGCTTCATGCGAT  100

seq1  TGATAATATTGTCACTTGGAGAGGATCAAGACTCAACTAGGAGAGAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATATTGTCACTTGGAGAGGATCAAGACTCAACTAGGAGAGAAACC  150

seq1  GTTGGGCATGTTTATGAGGTATTTATTCCTCAGCAAGACCCCGTGTATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCATGTTTATGAGGTATTTATTCCTCAGCAAGACCCCGTGTATAC  200

seq1  TAGGTTAGTGTGGCTTGCTGGATGGTGTTGTGTAAGAAACAACCCCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAGTGTGGCTTGCTGGATGGTGTTGTGTAAGAAACAACCCCTTGG  250

seq1  AGATGGCAGCTTCCCTTTTGGTTTTTTGTTTTCTTTTGTTTTGCTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAGCTTCCCTTTTGGTTTTTTGTTTTCTTTTGTTTTGCTTTGCT  300

seq1  TTGTTTTACACTTTCAGGGTTGCTTAGGGTTGTATCAGGTTCCTGATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTACACTTTCAGGGTTGCTTAGGGTTGTATCAGGTTCCTGATATA  350

seq1  CGTAGCTGCGTGGGGTCATGTTCTCTTTCCTCTAAATTCTGATAAGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCTGCGTGGGGTCATGTTCTCTTTCCTCTAAATTCTGATAAGACTC  400

seq1  TATAAATCACGCCTTTATTATGTTTTCCTCAAACAGCACAGATGGAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATCACGCCTTTATTATGTTTTCCTCAAACAGCACAGATGGAGTGT  450

seq1  GCTATTTGTCTCTGGCTGGGATCTTGATAGTGGTTGTTCCGTGAGAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGTCTCTGGCTGGGATCTTGATAGTGGTTGTTCCGTGAGAATGG  500

seq1  TTGGTTGATCTCACTGAGGTACTGGATAGTAAAGACCAAGGTGGCCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGATCTCACTGAGGTACTGGATAGTAAAGACCAAGGTGGCCAATG  550

seq1  TATCAAACCAACCTGGATGTGGTGACTCAGACAGCTGCATTCTGCTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAACCAACCTGGATGTGGTGACTCAGACAGCTGCATTCTGCTTTAG  600

seq1  GAGGGAAGACAGTACACAGGAAACATGACACTCCCGTTCCCCTCCCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGACAGTACACAGGAAACATGACACTCCCGTTCCCCTCCCTGAC  650

seq1  TACTTCGGCTAATAGGCTGTTGGATTAGTCACTTTGCTAATGAGTAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCGGCTAATAGGCTGTTGGATTAGTCACTTTGCTAATGAGTAGTTT  700

seq1  TATCCTGGCCCTCAATGAACCAGGCCAGACAGGGGCCCTACAAACTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATCCTGGCCCTCAATGAACCAGGCCAGACAGGGGCCCTAC-AACTCTTG  749

seq1  GGAAACCTCCTGTAAAGTTTTGCAGAGCTAAGAGCTGCTAGGGACCAGTG  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGAAACCTCCTGTAAAG-TTTGCAGAGCTAAGAGCTGCTAGGGACCAGTG  798

seq1  TTTCTATACTGCAACTATATTTGGAAACTTAATTGTCTTTTAAAGAAAAT  850
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  TTTCTATACTGCAACTATATTTGGAAACTTAATTGTCTTTTAA--GAAAT  846

seq1  CTCAAGTTAGAAAAGTAAAGGGTTTTATGATAATAATGTCCAAATAGTAC  900
      |||| ||||| ||||||||||||||||||||||| |||| ||||||||||
seq2  CTCATGTTAG-AAAGTAAAGGGTTTTATGATAAT-ATGT-CAAATAGTAC  893

seq1  ACTCCATGGCCCAATGTGCTTAGTTTTCATTGGCCTCTAAGATTTTTATA  950
      |||||||||||| |||||||||| ||||| |||| ||| |||||||||||
seq2  ACTCCATGGCCC-ATGTGCTTAG-TTTCA-TGGCTTCT-AGATTTTTATA  939

seq1  GTTTACAAAAACAAGCAAAGGAAAAGACACCAATGAGTCTCAGCTAGGGG  1000
      | ||||||||   ||| || ||||||||||| |||||| ||| ||| |||
seq2  G-TTACAAAA--CAGC-AATGAAAAGACACC-ATGAGT-TCA-CTA-GGG  981

seq1  TGGTTGTGTCCCTCTGGGGA  1020
      ||  ||||| ||||||||||
seq2  TG--TGTGT-CCTCTGGGGA  998